Array 1 922049-923674 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483413.1 Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 922049 32 93.8 33 ............AT.................. CATTATATGAACAATGCCTTTGCGGAATTAGTT 922114 32 93.8 36 ............AT.................. AATCAACTGGATAAGTAACTCTGCATAGCCGCTAGC 922182 32 100.0 34 ................................ CAGTTTCCGAGCCAGCCTGTATTTTGCCAATAGA 922248 32 100.0 35 ................................ AATAACAGTGGAGCTATGATCCTTAATCATGCACC 922315 32 100.0 34 ................................ GACTGTTGGCTCTTTTTTATTTTTGTCATCGTTA 922381 32 100.0 35 ................................ AGCCAGTCGGGTGGTCAGAATGACGATGGCGAAGT 922448 32 100.0 36 ................................ GATAAAAAGGTATCCGAAAAAGAAATATTTGTTGAT 922516 32 100.0 34 ................................ CGAAAATTTAGCGAATGCCCTTGCTGAAATTCTT 922582 32 100.0 34 ................................ ACGAATGAGCTCGTTAAAATATGATGATGTTATT 922648 32 100.0 35 ................................ CCGATTGGAGAGTTCCCATGGTTACAATAAAACCG 922715 32 100.0 34 ................................ TGCTTATGACAATGACGTTCAACAATAAAAAAGA 922781 32 100.0 34 ................................ TTTTAATTAAATGCTGTCTTGGTGTTAGAGAAGT 922847 32 100.0 34 ................................ AGATTGAAAACTACCAACCAAAACCAAATGAATC 922913 32 100.0 35 ................................ TGATAAATTACTTAGTTTTGTGCTAAATGAAATCA 922980 32 100.0 33 ................................ CACCATTGATTTAGGTTTGTTTTGACCAGATTG 923045 32 100.0 35 ................................ TTTAAAAAATGGGAAATCCTCTTTTGTTTTAGCGT 923112 32 100.0 33 ................................ AGCGTTACTATGGGAATGTCAAAAGGTTATTGC 923177 32 100.0 35 ................................ TCACGGTGTCGCTAGCAAAATTAAACAATTTAAAC 923244 32 100.0 36 ................................ CACTTTTGCTTCTGCTTGCTTTTGCTTTTTGCAAAA 923312 32 100.0 35 ................................ AGAAAACAAAATAAGCTAACCCAAAAAGAGCTAGC 923379 32 100.0 33 ................................ CTCTTGATATGGTTAATAGCGTCTCATACTCTA 923444 32 100.0 35 ................................ TCATGATTATGAGTTAATTGTAGCGCAATTAAACA 923511 32 100.0 34 ................................ TGAGGGAAGCGGAATGAAGAAACCAAATCGTTAC 923577 32 100.0 34 ................................ GATGACGATAATTACGAAGTTATTGAGGTGACGG 923643 32 90.6 0 ............................C.TC | ========== ====== ====== ====== ================================ ==================================== ================== 25 32 99.1 34 GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Left flank : AAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACGGAAACACCTGCTGGTAGAAAAAGATTGCGTCATGTTGCCAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCAGAATTTGTGGATATAAAGCACCGCTTAACACAAATCATTGATGAGAAAACTGATAGTATTCGCTTTTATTTATTGGGGAAAAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAAGCTAGCTTTCACAGAAAAACCTTGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTGTGCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGCA # Right flank : CCTAGATTTTTGATGGATCTATTTTGAGTTTTTCTTCACTCATAAATTTCCATTTATTTTCTCCCCTCTCTTTCCCCCTCACATATGCTATAATAAGCTTAACAAATGCATGGTAAAGGAGTTAGGATGGCTAAGGTTCGGTATGGGATTGTGTCGACGGCGCAGGTGGCCCCTCGTTTTATTGAGGGGGTGCGCTTGGCTGGCAATGGCGAGGTTGTGGCGGTGTCCAGTCGGTCACTTGATAAGGCAAAGGCTTTTGCGGCAGCGCATCAGTTGCCTAAGGCTTATGGTAGTCTTGATGACATGTTGTTGGATGCGTCGATTGATGCCATTTATGTAGCAAGTATCAATCAGGACCATTTTCCTGCGGCTAAGAAGGCTTTGCTGGCAGGCAAGCATGTTCTGGTGGAAAAACCGTTTACCTTGACATCTGCTCAGGCTGAAGAACTTTTTGCTTTAGCGCAAGAGCGCGGCTTGTTTTTGATGGAGGCTCAGAAGGC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,1.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1223149-1224109 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483413.1 Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1223149 36 100.0 30 .................................... TATGCAATCAACAGGACTTTTTGATAAAAA 1223215 36 100.0 30 .................................... TTGATGATGGCAAACTGCTGTATCTTGGCC 1223281 36 100.0 30 .................................... TAGTAGATAAGTTGTATAAACATCGCCTTC 1223347 36 100.0 30 .................................... TTTTCCCGGCTTAGCGCTATGACCCTGTTT 1223413 36 100.0 31 .................................... CCAAGGAGCGTATTATTACGCTATTTAAAAA 1223480 36 100.0 30 .................................... TTGATAAATGCGAGAATGACTTTGAAGAAA 1223546 36 100.0 30 .................................... TCTTGGGTTATGGAAAACATGACACAAGAA 1223612 36 100.0 30 .................................... TAGTGTTAGGTGGAAAATCAAGAAAACTCT 1223678 36 100.0 30 .................................... TAAGTATTCACGAATTTCTTTGACTGTAAC 1223744 36 100.0 30 .................................... TGGTTTATTACAAAATAAAAACTCCCAAGT 1223810 36 100.0 30 .................................... TTTAAACCCTACTTACGCGGATTTAAGAGC 1223876 36 100.0 30 .................................... AAAGTTACAAGAACCACAACGTGTTTCAAT 1223942 36 100.0 30 .................................... CGATGTACACGGAGGAGCCTTTGTCGGTCT 1224008 36 100.0 30 .................................... ATTGTAGATATCCCATTCATCTCTTGTAAT 1224074 36 94.4 0 .................................TT. | ========== ====== ====== ====== ==================================== =============================== ================== 15 36 99.6 30 GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGCGGAGCTTTTCTAACAAAGGATGAAGTGGCTAGTTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAACCACGTAAACTATATGATTTTCCGCAGTATATTTTAGATAAAGACTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATGGCGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : CAATATCGTCAATATGACTTGAGAGAGGGATAAATACAATATCCTTATGCCTTCCCATTCTTTCTATTAAAACGTTTTCATGTTATAATAGTCAAAAGGAGAAGGAGGGTGGAGCGATGGAACAAACATTTTTTATGATTAAGCCGGATGGGGTTGAGCGAGGGTTAGTTGGAGAGGTTTTGCGGCGGATTGAGCGTCGAGGGTTTACATTTGAACGCTTGGAGTTGCGGCAAGCTAGTCCGGAACTCTTGGCTAAGCACTACGAAGCCTTGGTAACTAAACCATTTTATCCTGAGCTTGAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGGTGCTGTCGGGAAATCGGGTGATTTCCTCTTGGCGAACCATGATGGGGGTAACTAATCCTAAGGATGCTCTTCCCGGGACCATTCGTGGTGATTTTGCCCAAGCTCCTGGTGATGATGGAGGTATTTTTAACGTGGTGCATGGGTCTGATTCAAGAGACTCTGCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //