Array 1 19305-18213 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVZN01000046.1 Neisseria meningitidis strain MRSN430937 MRSN430937_contig00046, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 19304 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 19238 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 19172 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 19106 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 19040 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 18974 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 18908 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 18842 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 18776 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 18710 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 18644 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 18578 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 18512 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 18446 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 18380 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 18314 36 100.0 30 .................................... TCTGCGGATTCGTACAAGTCATAAACTTTT 18248 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.8 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //