Array 1 1116363-1117367 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012266.1 Cronobacter dublinensis subsp. dublinensis LMG 23823 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1116363 29 100.0 32 ............................. CGTCACGTACCGGCATTCAGACATACCTCGCC 1116424 29 100.0 32 ............................. GCCTGTTAACGGTGACCGAGAATGGCTGAGAT 1116485 29 96.6 32 ............................C CCGTCGTTCTCGCCGTGAATAACAAAAATGGC 1116546 29 100.0 32 ............................. TTTCCGCTTTCGTCGGCAGGCGCATTAAGCAG 1116607 29 100.0 32 ............................. ATGCTTACTCTCCAGCGCTGGGCGGCGGAAAT 1116668 29 100.0 32 ............................. CGCGTCACCATACCCGCCAAAACAACTGTACA 1116729 29 100.0 32 ............................. CTGACTGTGAGTTAACAAAGTCAGTCATGTAT 1116790 29 100.0 32 ............................. ATTTCGATTCTGGTAGCCATATCTCACCAAAT 1116851 29 96.6 32 ............................T TCCTGCTACCGCCTTTCGCTATAATTGCCACC 1116912 29 100.0 32 ............................. ATGATATAGGTTAACCTATAATTTATTTCATC 1116973 29 100.0 32 ............................. TGGCGGATAATCGCGCGCTGGTCAGCCTTGCT 1117034 29 100.0 32 ............................. ATTTTTAGCGGTACTGACGGAATTAAGTTTGA 1117095 29 100.0 32 ............................. AGCGCGCGGGCTTTCAATCAGCCGCTGCTGCT 1117156 29 100.0 32 ............................. CCAGGGTAGTTTTTCACCCGATACCATAAAAT 1117217 29 100.0 32 ............................. CGAATAAATTGCTAACCATGCTGCGCCTGACC 1117278 29 100.0 32 ............................. CAAGAGCGATATTGGTTACCTGGCTCATACTG 1117339 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGAAAGCTTTAAATGGATGATGGCGCACAACATCGCCTTTATTGTCGTCAATATCAACATCAACTATCGCCGTCCTGCGGTGCTTGGCGACATGCTGACCATCACCAGCGAGATGAAACAGCTCAATGGTAAAAGCGGGGTGCTGAACCAGGTGATTACGCTGGGGCCCGAAGACGGGGTGGTCGCCGACGCGCTCATCACGTTCGTGTGTGTCGATCTTAAAACCCAGAAAGCGCTGCCGATTGAAGGCGAACTGCGCGAAAAACTGGAAAATATCACAGGGTAAATTCTGCAATCACGCTGCCTGTGCGTGTAGTCATGGACTTCCACTTACCGAAAGCGAACAATCCGGTAGATGTTATCGGCTCGAAAGCACGCTGAAAAAAGGCTTTTAAAATCAACAGGGCAGCCGCTCTTTAACAAGATGGGTTGTGAAGTAAATGTTGGTAGAATGTTGGGGTCGATAAAATTTTAAAGAAAACAGCAGGTTGTTTTTAGA # Right flank : GAACCCGTTCGCCGCGGCGCAAAAAACGCATCTCTGTCACTCGTGCCAGCCCGAATATCCAGCTAACCACCCGCCAGGGCAATCCCTCCCAAACCCCATATTCTTCAGCAGCGTTTATACTTCAAAGCCAACATGAAATTTCGCAACACTGCGCAACGAAGGAGAGGCTATGCGGGTACACCATCTTAACTGCGGTTGTATGTGTCCTTTTGGCGGCGCGCTGTATGACGGCTTCAGCAAAGGGTTGCACGCGCATCTGATTTGCCACTGTCTGCTGATTGAAACTCAAAATAACGGACTGGTGCTGGTGGATACTGGCTTCGGCTGCGACGATATGCGCCATCCTGGCCGTCGTTTGCCCCTCTTTTTCCGGGCGCTGAATAACATTCAGTATCGCGAATCATTAACGGCGCTGCATCATATTAAGTCGCTCGGTTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGCGGCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1143819-1145111 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012266.1 Cronobacter dublinensis subsp. dublinensis LMG 23823 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1143819 29 100.0 32 ............................. GGATTACCAGTCATCCAGTTGTAAAACAGGCG 1143880 29 100.0 32 ............................. CGTTTGTATAGCGAGTTCGGATACCCGCTTGA 1143941 29 100.0 32 ............................. TGCGCATTTGTGTAAGCCAGGCTTTGCTGGAT 1144002 29 100.0 32 ............................. ATGGCTGGTTGATGCAAAGTCCAGCCATCATG 1144063 29 100.0 32 ............................. TGACCATATAACGGACCTTTGTCGGCATTACC 1144124 29 100.0 32 ............................. GTTGATAATGAGTCGTCAGAGAATACTTCTTC 1144185 29 100.0 32 ............................. TTACGTCGTGTTGTGCAGCAGTACCGAATTCG 1144246 29 100.0 32 ............................. GCGATAAATACCCTGGCTGTAACGCCAGGTGC 1144307 29 100.0 32 ............................. GATAAGCTCCCACGTCGCGAAAAGGCCCGGGG 1144368 29 100.0 32 ............................. AGTTCTATTCTGGAGGGCGCGGGCGTCGGGCA 1144429 29 100.0 32 ............................. GTGCGATTAGTGAACTTCCCTGAGCTTAGTGA 1144490 29 100.0 32 ............................. CACCACGTGAGTGGAGCCTTGACCGCCGTGAG 1144551 29 100.0 32 ............................. GACCCGCGCGCCGCTACCAGCTCAATCGTAGT 1144612 29 100.0 32 ............................. TATTCTTTCCCGCCAGCATCAAAATCGGCTTT 1144673 29 100.0 32 ............................. ATGGAAGGACTCAAACCGTATACCCGACAGAC 1144734 29 100.0 32 ............................. GTCTGTCCGCCAAATTTGGTGCCGTCAGGTAA 1144795 29 100.0 32 ............................. ACAGATCACAAAAATAACGAGTACGGATTTGT 1144856 29 100.0 32 ............................. CGATTCATTGAGTTGAGCGGCACCCAAGACGG 1144917 29 69.0 13 .................ACAACGTC..G. CGCTGGAGGCGGA Deletion [1144959] 1144959 29 100.0 32 ............................. TCGATTCTCTCAACTCTCAGTTTGCAGCCAAC 1145020 29 100.0 32 ............................. GATCGTGTCGTAAAGGGTTAATTCCATATTTC G [1145037] 1145082 29 86.2 0 ............T.......A.G.....T | G [1145104] ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.0 31 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GAGGTGCTGGCGGCCGGCGACATCGAACCGCCGCAGCCCGCGGCGGATATGCTGCCGCCTGCTATTCCACTGGCGGATTCGCTGGCTGAAGCGGGCTTCAGGAGCCGCTAATGAGCATGCTGATGGTTGTCACCGAAAACGTGCCGCCGAGACTGCGCGGGCGGCTCGCTATCTGGCTGCTTGAACTGCGCGCCGGGGTTTATGTCGGCGACGTCTCGAAGCGGGTACGTGAAATGATCTGGCATCAGATAACCGAGCTCGCGGAAGAGGGCAATGTCGCGATGGCCTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTATGGCGTTAACCGACGTATTCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCATTTTTACCCCTTCAGAATCAGTAGGTTAACTGCTCTTTAAAAATATGGAGATGTAATAAAAAAGTTGGTGGATTGTTGGGTGTGAAAAATTTCCATATAGAACAGTGATATAGTTTTAGA # Right flank : TTTGGAATAATTCAAACGAAGGTTTAGATTCTTCGGGAACTAGAGTTGTGGTTATTTTTTATAAATATGATAAAACTTCTTAAAATAGCTAATTTTTATTTTAGTTAATGGCTTTTAAAGCTTTATTACAATGTTTTTTTCGAAAATCATATAGTATCCCCTGATCATTTTTTTAAAATTAAATTTTATATGGCATGGGGTAAATATGCGGCGATAAGACACGTGCGTGATCGTGCTTATAGCCAAAGTCATCATAAATGCGAACTCTTTGTTAAAGAGGCTATTATTGCGGGTGGAGTAAATATCTATCCCACACCCTCAGCAAAAGATATGGGCAAGGCGTTGATAAAACCAGGGTTTTATGAGGTTTATGGCGAGCCTGTTGCTGGTGATGTGGCGGTGATCCAGGCAATACCCGGCCATCCTGATGGCCATGCATGCATTTATGATGGGCAAATTTGGATAAGCGATTTTCGACAAAAAACGCTCTACCCCGCAGA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //