Array 1 7489-9102 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAHBQ010000113.1 Oscillatoria salina IIICB1 scaffold00116, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 7489 35 100.0 38 ................................... AAATGCCGAAACCAACTAAGACCAAAATAATTCCAACG 7562 35 100.0 39 ................................... GATATGAAATCCGCCAGACACCGGCCTGAAAATATGCAA 7636 35 100.0 34 ................................... CAAAACTGGAACTTCCAGCAGCTGCAAAAACACA 7705 35 100.0 36 ................................... ACGATCATCTTGTTTACTCTCTTTTATGAGAGTGTA 7776 35 100.0 38 ................................... TTGATAGTAAGCAACGGCTAGAATAGAATCTGTATTTT 7849 35 100.0 36 ................................... ACAATGTCGGCCTTGGTTTCTTCGATTAAAGCATTC 7920 35 100.0 40 ................................... AAAATACATGTCCTGTCTCTTTTACCTGAATGTCCAATGG 7995 35 100.0 40 ................................... AGGAAAAAAACGTATTTCTTTCCCAACTCAGAACGCACTT 8070 35 100.0 41 ................................... AGCACATCGCCGGCCAGCAAATGTCATTGGTGTGCAACGAT 8146 35 100.0 42 ................................... CTCGGATCCGATTGGCCGGTTACCGTTGAGTAGCCTAACCGA 8223 35 100.0 35 ................................... AACAGGGCTGGTCGGCCATTTTCTTGGTATAAAAA 8293 35 100.0 36 ................................... TTCCTTGGCTGGGGTTTCGGTCCCCAGTTACTACAG 8364 35 100.0 37 ................................... CATCAAAACGATCTCCCCCGTCTTCACGACGGATTTC 8436 35 100.0 39 ................................... CACGCTGGGCGGCAGCGCCACCAGCGAAAAGGCCAGCAG 8510 35 100.0 39 ................................... TTAAGCAGTAACCCTTGAAACCTGCTACCTGAGACACCA 8584 35 100.0 33 ................................... ACTGCCTGGGCAACTCCAATAGCTACAACAAGA 8652 35 100.0 37 ................................... AGGGTTCGGTTGGTTAGGGTTCGGGTTCGGGTTCGGA 8724 35 100.0 37 ................................... TCTCGCGTTGTATATTCATCCCGCAAAATCGGGTGAT 8796 35 100.0 37 ................................... TAAAACGCTATTGGTTACACTCTTGTGTAACCGTCGC 8868 35 100.0 39 ................................... TTTTCAACCCAGGGCTCAGCGAGCCCCTCAAGTTTTTCT 8942 35 100.0 43 ................................... ACTACAGTAATCCCGCCTTGCGGGCGTGGCTTGAGTCGTGCTT 9020 35 91.4 10 ............................A.C...T CCTCAGCATT TC,T [9045,9054] Deletion [9068] 9068 35 91.4 0 ..............A...........C.G...... | ========== ====== ====== ====== =================================== =========================================== ================== 23 35 99.3 37 CTTCTGACTTCTTCGGAAGTTGAATTAATGGAAAC # Left flank : TCTAAAGAGTTCAGCTTTACCTACACCTCTATTATCCATCCAGAAGCGAAGCACTTTATTTCGCACAAACTGACTTGTCCGAATCGCCTCTTCAATGGCAGCTACTTGTTGTGGCTTTGGCTTAACCTTGTACTCCAAGACCAACATTTGATCCTGACCACGTTAGTATCAAAATGGTAGCAGATTCAACCCAAAATAGCAACAAAAAGCCGTCCTCCGCTTCGCTAAAGGACGGGGCTTGAAACCCAAGATTTTCGGTCAAGCGTAGCGCATCTTACCTCGATTTTTGGATTAATTACTCTATATTTTCGAGGGGGTTTAAGAATCGCTGAAAACCCTATTCTTGCGTAAAGTGCTACCAACCCCAGTCAGCGTAAGGTTTTCAAGCTCTTGAATGAGGTGCTTAATGAAACTTATTCTCAATTATTCGGCTTCTCCCTTGACCCCCGGAATTTTATGGGGTTATAATCCTCTCATACAGGGGGTTCTAGATCGACCCT # Right flank : CCAAGTCAACATTTTATGTAGAGACGTTGCATGCAACGTCTCTACACAGTCATGATGCGTAGGAAAAATTATCGAGATCCTCTTCTTCAGCGCCACAAACCGCTACGATAAAGAAAGATTAACCAGACGACATAAACATGATTTGGCAAGAAATTTCCGGTGGTTGGGTGTTACTTCCCCGAAATCCTATCGGTATTGTACATTTTCTCGGCGGGGCGTTTGTCGCTACAGCCCCTCAAATTACTTATCGCTGGTTATTGGAAGAATTGGGGAAAGCTGGTTTTGCAGTAGTTGCGACACCTTTTCTCAATACCTTAGATCATACAGCGATCGCGCGAGATGTCCTCAATCGTTTCGAGACAATTCACCATCGCTTATTAGTGACGAATGCTTTGGAAAAACGGTATCTCCCCATCTATGGAATTGGACATAGTATGGGTTGTAAACTACATTTATTGATTGGAAGTCTCTTTTCCGTCGATCGCGCTGGTAATATCTTA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTGACTTCTTCGGAAGTTGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 2549-8863 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAHBQ010000099.1 Oscillatoria salina IIICB1 scaffold00102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 2549 35 100.0 37 ................................... GGGGAGGTGTGGGATGAAAGAAAGTCCGGGTATACTT 2621 35 100.0 38 ................................... CTTTTCCAAAAAACTTTCCCCAATCAGGGCTTTGAAAA 2694 35 100.0 38 ................................... CAAAAGCAGCAGCAACAGCAAAAGCAGCAACACAAACT 2767 35 100.0 39 ................................... AGGAACGAACTGGGGTCTCGGTCCCCAGTAATGCTTGAA 2841 35 100.0 35 ................................... GGAAATAGGCAATAGCTAGAATCTCCAAATCGTTA 2911 35 100.0 38 ................................... AGAATTTCCCCAGCAGAATCGGCATTCAGGAAAAAAAA 2984 35 100.0 39 ................................... ATAATGGTCAATGTCGGAACCCCATGTACGATCCCATAG 3058 35 100.0 40 ................................... GATATACGCCAGCTACCGCTTTGGTAGTAAGCCACGGCCA 3133 35 100.0 37 ................................... CGGACTTGTATGTCCAAGGGGACACGGATACTAGCCT 3205 35 100.0 39 ................................... CCTGTTCTTTTTTGGCGAACTTCTCCGCCGCTTCGGAGC 3279 35 100.0 33 ................................... TGGATGTCCAATGGGACACGGACACGAGCCTGT 3347 35 100.0 35 ................................... TTTGGACTTCCTTGTATTGCGGATCTGATTCAAAA 3417 35 100.0 40 ................................... CCGGAGTACCCTAGCTTAGGGTATTCCATGGTCACTGGAA 3492 35 100.0 39 ................................... TATGAGGATCATGTGGCCGTCATACTGGCCATTTGTGAT 3566 35 100.0 36 ................................... TTTTTTAGCCCCTTAAAAGTTGGGACCCACTCCACG 3637 35 100.0 42 ................................... TCTACGTCTTCTTTTTCTTCTTTAACTTCCACCTCTCCAGTG 3714 35 100.0 36 ................................... TTACAGCCCACTCGTCTGGGCTGACCTCTGTTACGA 3785 35 100.0 36 ................................... TAGGGGAGTAAACTTAATTACTCAACCCAGAGGAGG 3856 35 100.0 38 ................................... AAGAGAAGACTGTGTGTATTTCGAAATCTCATTTAACT 3929 35 100.0 36 ................................... TGCCGTTGCCGGCGCTCCTCGCTTTCACGAGTTGCG 4000 35 100.0 35 ................................... TTCCTTTATTATAAAAGGCAACTCTGTAAATTTTA 4070 35 100.0 40 ................................... ATATCAACAACCCCTATGACCACCAAAGAAGGTTTTTATC 4145 35 100.0 38 ................................... TCGCTTGCCGGGGTTGCGGGCTTGCCCGCCGCAGTGAC 4218 35 100.0 36 ................................... CTACCACTACCAGTTTGGCTTTCGGCTTCCTCGCTT 4289 35 100.0 33 ................................... AAAATGATCATTAGGGCTGCTATTGCAGCACAA 4357 35 100.0 36 ................................... GTTGGTTAGGCTGGTTCGGGCTCGGGCTCGGGCTCG 4428 35 100.0 39 ................................... TCGGATGACAAAACGTATACGCCACCCAAGGTGACACAG 4502 35 100.0 36 ................................... TAGTCTACGAATGGCTTGTAATACTCAAGCCATTTA 4573 35 100.0 42 ................................... CACCTACACAGCTGCACCCATCTTTATGGATGCACTGGCCTG 4650 35 100.0 37 ................................... TGCTGCTGCTGAGGAGGCTGGCGATAAATCTCGCACT 4722 35 100.0 38 ................................... TTTTTTGCTTTTCCCTTTTCAAGGCGGTTAGCTGCCTT 4795 35 100.0 41 ................................... CAACAGCCTCAACACCACCGAAACCGAAACCGAAACCAACA 4871 35 100.0 35 ................................... AGCTTGCCACTCCTGAGGCTTCTCAGGGAAAGTTG 4941 35 100.0 40 ................................... GTCAATCCAGTCGCCGTTTTCATCCAACGTCCAACACTTG 5016 35 100.0 35 ................................... GAGCATCAGGTGCCGGGGGGAGTTGGAAACCCCCA 5086 35 100.0 38 ................................... GTGCTTCCGCATCCCCGGCGTAACTGTTGTAGTCTCCG 5159 35 100.0 37 ................................... AATCGGTCCAATAGCACTTTCGCAACTGATTTATTCT 5231 35 100.0 36 ................................... TGCTGGGACACACATGGTCCCCATGAATATGTTCGT 5302 35 100.0 35 ................................... ACGGGTCCGCTGCGTGCCGCCAGCACCAGGGGCCG 5372 35 100.0 38 ................................... AATTGCTTCGCAGGGAAGCGGAGCAAACAAGCCAACAG 5445 35 100.0 37 ................................... TACGCAGTACCCACGGGGGCCTGCAGTTTGACTTATA 5517 35 100.0 36 ................................... CTGTAACTCCAGGTTTTGCCTGGCTGGACATTAAAG 5588 35 100.0 39 ................................... CCGCCCTCGCGACTGCTCTCAGTCGTGATGGGTTTACAA 5662 35 100.0 38 ................................... TGGAAGCCCCCCCGGTCATTCGATGGGGGGCAAATTGC 5735 35 100.0 36 ................................... CTGCTGGGGCTGGGGTTGCCGGTATTCCAGGCACCT 5806 35 100.0 38 ................................... TCATAGGCTACGCTACAACTAGTCCGAGGGGACTAGTT 5879 35 100.0 42 ................................... TCCCCAACTGGGGAGAGGCCCCCATTGCGACGCTGCGGGCGG 5956 35 100.0 39 ................................... AAGGGCTAAGAACGCTCGAACCTATGAGAGGTGTTTAGG 6030 35 100.0 30 ................................... TTTTTAGTAGGACTGAAAAGATTACAAAAA 6095 35 100.0 39 ................................... ATAATGGGGCCCCTGATTTTGCTGGCCGCCATGATCAGG 6169 35 100.0 36 ................................... GGTCAACCTCATCGAACTTGGTGGCACCCTTCACGG 6240 35 100.0 36 ................................... ATGGGTCCCAACCCCAAGGATTGTTTTTTGCCCCCT 6311 35 100.0 38 ................................... CGAGATTCCCATTGCGTTGCTGCGGCTGCGGGCGATGC 6384 35 100.0 39 ................................... CTGCCGCTGCTGCGGGGGTTGCTGCCGCTGCTGCGGGGG 6458 35 100.0 35 ................................... AACACGGGAGCCGAAGCCAATAACAGCACCGAAAC 6528 35 100.0 37 ................................... AGACTTGTCCGACTCATGCCCCTGAGGACAAACATGG 6600 35 100.0 38 ................................... TTTATCGCTTATTCGTAGCGAGTTTCTTGACAATTCTG 6673 35 100.0 38 ................................... TTATCACTTCCTTCTCCATCGGGGAGAGATGTTCATCA 6746 35 100.0 35 ................................... TATTGACATTACTCGCTCAAACTCGCGAATAATCA 6816 35 100.0 34 ................................... CCATCCTCATTTTCCATGACTTCACCTAAGTACT 6885 35 100.0 36 ................................... AACAAGGGGCCTATTTATTTGGCCTTTGTTGTAAAA 6956 35 100.0 38 ................................... GAACACCAACACCAACAAGAACGAGACCAGCGATTTTA 7029 35 100.0 36 ................................... TAGACTCACAATCTGTTTTATTGGGCTTATGCCCTT 7100 35 100.0 36 ................................... AATGCCGCTGGGTCTGTGCAACTTCGAATTTTTCGA 7171 35 100.0 40 ................................... AATTTGGCAGCTGGGGGAGGAAGGGGTAGTATTACTACCA 7246 35 100.0 41 ................................... CGGGTGTTTATCTGGTTCTCCGCAAAGTTCTGAAAAAAACT 7322 35 100.0 37 ................................... CCGCGACGGCCGGCACCGTCGTCTGAATCGCCGTCGG 7394 35 100.0 35 ................................... TCGTATGCGTTATAACTACCGACAATGCGCAAATT 7464 35 100.0 33 ................................... GGGCGCTGCCCCCGCATAGATTTTCGAATGCTT 7532 35 100.0 35 ................................... GTGAGGTTCGCGTCTGGACGACGCTGCTGCTGCTG 7602 35 100.0 36 ................................... TCCATCGGCCGACTGGACCTGCCCATATATCCAATA 7673 35 100.0 41 ................................... CTGGGGAGGATCTGACGCTGCCCCTGACCCTGGTTAGGGCT 7749 35 100.0 30 ................................... TAACTCCCACCGGCTTCCTACTCGGCCCAG 7814 35 100.0 35 ................................... CGAAACAAGCTCTGCAGTGCCTTCCAAATCCGCAT 7884 35 100.0 38 ................................... AACAAGAAAAGCAATAGCAGCCACTAACAATTGGCGAA 7957 35 100.0 38 ................................... CCAGTTCCTCCTCGACAGGGGGTTTCTGCGGAGGATGG 8030 35 100.0 35 ................................... CTGGAGGTGGCTGATGCCACCTCAACGGAAAAAAG 8100 35 100.0 37 ................................... CCGAGAAAACCGAGGCCAACGAAAACAGAAGCAACAG 8172 35 100.0 40 ................................... CCTCCTTTGATTTCCCAACCGAACACTTGGTCCGGCAAGG 8247 35 100.0 36 ................................... GACAGCGGCCACTGGCGGCGTCTATGCGAAGACACC 8318 35 100.0 37 ................................... CGGAAGACTTCTTCGACGATAATCTCCCGAGTGATAT 8390 35 100.0 39 ................................... TTCTCCGCACAGGAGAACCATTTCCCGCAGCCGTTAGCT 8464 35 100.0 38 ................................... TCCTGATTGTCAACACTTAAGCCTGAGCAGGCATTTTT 8537 35 100.0 34 ................................... GCCTTGTCGGCCGTCTGAGCTACGGAGCCCACTA 8606 35 100.0 41 ................................... GCAATGCCTGCGTAGTTGCCGTTCGGGGCATAAACCGCCCG 8682 35 100.0 38 ................................... ATCTACGTGCCTCCCAGAACAAGCAGCCTTCGCCGCCT 8755 35 100.0 39 ................................... TCAATATTGTTGGCTTGAAAACTTCGAACTGTATACTCA 8829 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================== ================== 88 35 100.0 37 CTTCTAACTTCTTCGGAAGTTGAATTAATGGAAAC # Left flank : CTGGGTCAACGGCTAATCCGCGATCGTCGATAATATTTGTAAAGTGTTTGGCACAAATTAATCCGGCTTCGGAATCTAGGTAGATAATAAAGTAGCCACCCGGATCTAGGGCTAGGTCGCGTTTGGAGAGTTCGTTATCGATCGCTGTTATATTTTCAATTGTTTGACTCATTGGCGTTGTCTATAAGTTCTTTTTCCAGTTTAAGAGTCTGAGTGACAGTTGTCAGTTTGTCTTCTTTTTCTCTCTTTCCCAGTCCCCAGCGTAGGGGCAAACCCCCCGTGGTTGCCCTCCCCTCCTCCCCAATTCCTGGTAGCACTCTGGCGATCGCTGAAATGCCTATTCTTTGGTAAAGTGCTACCAACCCCAGTCTGGGTATGGCTTTCAAGCTCTTGTCTGAGGTGCTTAATGAAACTTATTCTCAATTACTCCGCTTCTCCCTTGACCCCCGGAATTTTTGGTGGTTATAATCCTTTCATACAGGGGGTTCTAGATCGACCCT # Right flank : CCATGTTGAAATTATGGTATTGATTGTCATCCTGAGCGAAGCGAAGGATCTCACCAGATCCTTCGTGTCGTTCAGGATGACGTAGATTAAACTTGCGGACAGAAAAAGAACTTGAAGATGACCTAAATTTTATTAGCAAAAAATCGGTTAATGATAACAATTAGAACTATAATTGTAGGGGCAACCACAGGGGGATTGCCCCTACTTAACTGTATCGGGATTAAGATTAATTTCTCGCTTGCTGAAAGGTAAATCTTGATTTATTGCTTCAATTTCTTCTTGTTCCATATCGTTAATTTCGTCGATATAAGCACCAAGAATTTTCTTCATCCGTGGGTCATAAAAACGGTGCATACTGTAGTTAGGAGTAGCAGGAAAACCGCGACGTTTTTTGTGTCTTCCTCCTGCGCCAGGGTCGAACATTTGTACCCCTTGACTAATTGCCCATTCTATGGGTTTATAGTAACAAGCTTCAAAATGTAAGCAATCATATTCTTCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTAACTTCTTCGGAAGTTGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 23119-23826 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAHBQ010000023.1 Oscillatoria salina IIICB1 scaffold00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 23119 36 100.0 40 .................................... GCGCCGGAGTTTCTTCTTCCTGCTTTCCTGTTTCCTTGTT 23195 36 100.0 36 .................................... ACTTAACTGCCTTGGAGATTAACTAGTCGTAGTCAA 23267 36 100.0 39 .................................... CAAAGTCCAATCATAATAGCCAACACTACCATCACCACG 23342 36 100.0 37 .................................... TTCCTGGGTTACTGACAACCCAGCCAGCTAGTGGAGG 23415 36 100.0 41 .................................... GGAAAGGATGAAGGTCGTAGCAAAATCCTGCGACAGGATAC 23492 36 100.0 37 .................................... GTACAGGGCAAACCCGTCGTTACCGTTTATGGTTACG 23565 36 100.0 40 .................................... GGAAATGGAAATGACTAGTAAAAGACTAGTCAAAAAAAGA 23641 36 100.0 41 .................................... CATAAGAAGCGGCTCATGTTACTTGTTAGTAACCATTGAAC 23718 36 100.0 37 .................................... TTCTGAGAAAACCACTACTGAGGGCTAGCCTAATTGG 23791 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 10 36 100.0 39 CTTTCCCTAACCTCTTCCCCGCAAGGGGATGGAAAC # Left flank : CGAAGCCTCTGAGTCAAACAAGAATTTCGTAGTTAGTTGTGAAATTGACTTGTCATGCTGAGTTGAATTTAGTGAAACGAAGCATCTGAGTCAAACAAGAATTTTGTAGTTATTTGTGGAAGAGACTTGTCATCCTGAGTAGAACATAGTGAAGCGAAGCATCTAACTAGATTAAGAGTTAAACTCAGCATTAGTTAATCTTTAACTGAAGATTTCTCAACCTCAATAAATTAGTAATAAAAGTAAACAATTATTACTTGTACTTGACAAAATAACTACTGTTTTAATAGCATAAATCCATCTGGTGCGAAATCGAAATCGACGCACCTCCCACAGAACCTCGAAAACCGCATAACTTCGTTGACCTGCGTCGATGCTTTACCCAGTAAGGGTTTCAGGCGACAAAAGTTTCCTAATTTCAGTAAGTTGGGAGTGAAAATTCGGAGGTGCGTCGATTTGACCTCTGAAACCCTCTCACAGCAAGGGTTCTACAGCGAACT # Right flank : CGATAAATTTACTAATAAATAGAAATAAGAAAATAAACAAAAATAGCGCCAAACTTTAGCAGTAAGAAAAATAACTTAGCGTTCTTCCTTTGCGCCTTTGCGCCTACTCGAAACGAGAAAGGCTAACGCCGAATGCGCGAGATATAATAACCAAAAACCCTTGATTTCGCGAACCAAGGGTTTAAATTATCAAACTAATTTAATTTTGACTACTCCCCTCCCTCCGCGTTGCTAAAGGGAGGGGATTCACAAGTAGTTCTCTTTCCTCTTGCAGGCACAGTCAAGTTGCCTCTAGACGCTCAATATGTTGAGATATAGCCGCATATATTGCGCTTACTTTTTTTAGTTTTATGCTTTCAAACATCCATCACTCAGCTAGTTTAGTACGCTCCTCGCTCTGAAGAAAGCTTGCAGTGGTTTAGTCATACTGCCGTTAGAGCCAATCTAACCGTTGTTTCTTACTTACCGGGTTTTCGACCTACTAGAGCGAAGAATCACGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCCTAACCTCTTCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 29669-29348 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAHBQ010000034.1 Oscillatoria salina IIICB1 scaffold00033, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 29668 35 100.0 35 ................................... TTGTTCGGCACCATTTACAACCTGATATAATTTCG 29598 35 100.0 37 ................................... AATTGCGGCTTTTGAACCATTGGATAAAATTTCTCGG 29526 35 100.0 37 ................................... GCCCAGTATTTCACCACAAATTTCCAGAAGGCAAAGC 29454 35 100.0 37 ................................... AAGACCCTTCCTTTTCTTTTGGTCTCTTCGTATCGCC 29382 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ===================================== ================== 5 35 100.0 37 CTTACGACTTCTTCGGAAGTTGAATTAATGGAAAC # Left flank : AACGATAAGAGTTAATGCAGTGATTTTCAGTTTTAAGTATATAACAGTTAAGTAATTTTAGCAAGTGGCGATCGCGTTTTACAAAGAGTATTTACTTATTGACAAATTAACAAATTCGTGTAGAAAATCGCTCGCTCTAGTTATCCCTACAGAAGCTAATAGTATTGGGATTGATGTAGAATTAGATAGGTTTGCTTTTCTTTCAACTGGAGAACAAATAGACTGTCCTAAGTACCCCCAAGAAGCCGAAGGTGATGTTCTCCAACGCGCTCATCACAGATTACAGTTTTAGAGAATGTCACTGCATTTTCGAGGGGGTTGACAAATCGCTGAAAACCTTATTCTTACGTAGACCCCCTTGAATGCCTTATCCTGTATTGATTTCAGCTTCCCAATGAAGGAGATTAATGATAATTTTTATCAATTATTTGGCTAGTTGCTTGACCCCGGGAATTTTGGGGGGTATAATCCTTTTATCAAGGGGGTTCTAGATCCACCCT # Right flank : GGGAAACAATAAAAAATATGTAGAGATGTAGGACTACTACACCTCTACATACAAAGGAATTTAACAAAGATTTGTAACGAAAAACAAAAAAATATGCAGAGGCGTGGTATAACGCGCCTCTACATCAAAAAAACGAAAACTAAGCCAAAACCGTCGCAGGTTCTTGCCAACGATTAACAGCCTTACCGATCGCCGACAACTCAGTCATCAAACGGTCGAAACGTTCTGGAGTCAAAGACTGAGGCCCATCAGAAAGAGCCTTCGCCGGGTTAGGATGAACTTCAATCATCAAAGCATCGCAACCAGCCGCGATCGCTGCCATCGCCATCGTCGGAACATACTCAGCCCGTCCGGTACCGTGACTCGGATCGATCATAATCGGTAAATGAGTCAACTCGCGTAACACAGGAATCGCCGCCAAATCGAGAGTATTGCGAGCATACTGGCGATCGAAAGCCCGAATTCCCCGTTCGCACAAAATCACATTCGGATTTCCCGCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTACGACTTCTTCGGAAGTTGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 19012-15179 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAHBQ010000044.1 Oscillatoria salina IIICB1 scaffold00042, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 19011 37 100.0 34 ..................................... ATCGATAAAAAAATTAATCAACTAAGGGAAAATA 18940 37 100.0 35 ..................................... GTGACTTTTATAATATCGGCAGCTTTAAAATCGCT 18868 37 100.0 37 ..................................... TTCAGAAAAGCAGATCGGAAAGCGGATAGAATTTATG 18794 37 100.0 35 ..................................... TGAAAAGATTTAATCGACTCAACTGATAGATTTAA 18722 37 100.0 34 ..................................... TACAATTTTTGAACCTTGTTGGTGTCGTTAACTA 18651 37 100.0 36 ..................................... GATATCACGGGACTAGGACAACAGATCAGAAAAGCT 18578 37 100.0 34 ..................................... GTGACTCAGTGAGTAAGTGCAAATCGCTTGAAGA 18507 37 100.0 36 ..................................... TGCATTATTTAGGTCAAATGATATGTTCGGGGCATG 18434 37 100.0 36 ..................................... ATTTCAATTACCCATTAACCAATAAGGGCTTTCAGC 18361 37 100.0 35 ..................................... TTTATTCAGTTGATGATTGCGATAAACTTTTTGAT 18289 37 100.0 36 ..................................... GCGGCAATAGGTGGGGCTTATCTAGCATTCAAGTAT 18216 37 100.0 34 ..................................... AAAGCAAGTTAGTAAGTTAATTAGTAAGCGATCT 18145 37 100.0 36 ..................................... ACCATCAAAGCTGCGATTCAGAAAAAGGCTGTGATC 18072 37 100.0 34 ..................................... CGGTAGTGCCACAGTGCATTATGTCGATCGCCCT 18001 37 100.0 40 ..................................... TAAGCCACTCCATAGCTGACTTTAGAGATATATTTTCAAA 17924 37 100.0 37 ..................................... ACCAAATTTAACGCCTCGCTGATTACTGCAAATTACA 17850 37 100.0 33 ..................................... GTAAGCAGATTGATTAGGGTTTGCCATTTTTTT 17780 37 100.0 34 ..................................... TATGTTGACCCAGAGGAGGAAGAAGTTTCCCATT 17709 37 100.0 37 ..................................... GGAACTCACCCAGGAGATTATGCAGCGCTGGCTGGAA 17635 37 100.0 39 ..................................... GCGAAAATTGATTAGGGATTAGTTGATCGTAAAACGGAT 17559 37 100.0 46 ..................................... ACAGTTAGGCGATCGGGCGATCGCCGATCTTGGTAAAATCTCAATT 17476 37 100.0 36 ..................................... ATTTACTAACTGAATTGGACGCAATATCGAATCAAT 17403 37 100.0 38 ..................................... GGGCACTTTCTTTATCCGATAGTGGCTTATCACAATCC 17328 37 100.0 35 ..................................... GAGGCATCACCAACAAATAAAGCTCTTTCTAAGTT 17256 37 100.0 34 ..................................... ACTAGAGGATGAATTAATCTACTGGCAGAAATGC 17185 37 100.0 35 ..................................... TTCAAAATCGACAATTCTGCCTTTTGCATTAGCAT 17113 37 100.0 37 ..................................... ATTTAGAGAATCGATAGCGATCGCAAGTTTTAAAAGC 17039 37 100.0 34 ..................................... GAGTTATGGAATAAGCTTTTATCGGCTTATCCAA 16968 37 100.0 35 ..................................... TAGTGAGATAGAATCGATCGCCGTGTTAAATGAAA 16896 37 100.0 39 ..................................... GCGATAAACAGTTATGACCGGGTATCTTGATGCAGGAAT 16820 37 100.0 33 ..................................... GAAATAGTTTAACTGAGTGTACAACCAAAATAT 16750 37 100.0 35 ..................................... GAGGTAAAAGGCGATAGACTTATTGTGCGTTACTA 16678 37 100.0 34 ..................................... AATCGAGGTATTTAAGATGGCATCAAGCAAAAGA 16607 37 100.0 36 ..................................... AACTCTAGATGATCCAGCCATGAACAATCTGATAGC 16534 37 100.0 35 ..................................... AGTGACCAGGAAACTAAAGGCTTTTACAGGTTTAA 16462 37 100.0 36 ..................................... AAGACCTAAAATAAACTTTTTGTTTACCACAGAGTT 16389 37 100.0 35 ..................................... AAACAAAGGATTAACTATGGTCAAGAAGATTACTA 16317 37 100.0 38 ..................................... GACTGATTCCTGGATAGTCTCTAGTTTGGCGATCGCTT 16242 37 100.0 36 ..................................... ATGTTTTTGAAATGACATACTACCTCTTTGTTAACT 16169 37 100.0 34 ..................................... TAAGTACACGATCGGCGATCGCCTAGCTGTAAAA 16098 37 100.0 34 ..................................... ACCAGATTATCCGCTAAAACATCAGGTATTATTA 16027 37 100.0 43 ..................................... ACCTCATAATAAAATAAAGTCGGAGAAATAATTTCTCGATCAG 15947 37 100.0 34 ..................................... GGCTTTACTTGAATGATGAATTAGAATAATCACC 15876 37 100.0 38 ..................................... ATTTTTTTTGAATAAGGAGGATAAATAAGAGCGATCGC 15801 37 100.0 35 ..................................... CACTAACAGCTATGCGATCGCCTTTCTTGAGAAAC 15729 37 100.0 36 ..................................... AACCAATTCATAATTAACGAAAATTTCCTCAATAGG 15656 37 100.0 34 ..................................... ATTGCCAGTTCAAACCTTTGCCCACTTATATATT 15585 37 100.0 34 ..................................... CTGGATCTAGTCAGACAAGTTGAAAATAATAAAG 15514 37 100.0 37 ..................................... CTCAACAATGAGAGCAGATCCGGATCTAATTTTGCTG 15440 37 100.0 40 ..................................... TTTAGCTGAAAGGCTTGTAATTACTGGGGTGGCGGTCGGG 15363 37 100.0 34 ..................................... ACTGATAGAAACCGATTTTCTACAGTGACCGCTA 15292 37 100.0 40 ..................................... CCACACATAGCGCCGATTACCTCGGTAGCTTCACACATGG 15215 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 53 37 100.0 36 GTTGAAATCAGCTAAAATCCCTATGAGGGATTGAAAC # Left flank : TTAATGATAATTGGTTTTGTCGCGATTGTGGCGATCGCCAGCAACTCTTCCAAGACCAAGGGAAGTCAACGCCAAGGCAGAAATAACTATACTTCTAGTAGTTACTTTTGGAATTCCGATGCTCGCGACGGCGGTGAAGGTGGTGGCGACTTTGGTGGCTTTAGCGGTGGCGAAGCAAGTGGTGGCGAATGTGGCGGCGGAGACGCAGGTGGCGGCGGAGACGCAGGCGGTTGCGATGGCGGTTTCTAGCCGGGAAAATTTGCCTTTAATCTGCGGATGGGTAGGTGTACAAAATCGCTAAGAGAAAAAAATCGCTGGAACCTATGTAGTGCAATGCTTAGAAGTATTTTTTGGTTAAAAACGATCCGCAACCCTTATTTGGTAAGGTTTTCAGCGATTTGGGCTTGCTATTTCCTTCGCCAAATGATACAATTCAAACAGATTCGCAGAAATGAACCTCGAAAACTAAATATATCAACGGTTTCCAAAGCCCGCAGTTT # Right flank : GCTTCAACTTATGCCAGAAGCCAAGCAAAGCAAAACACCAATCTTAGCTAAACTACGAGAATTAGCAAATAAACCCCATGCTGCATTTTACGCCCCAGGACACAAACGGGGACAAGGTATTTCTCAACCCCTAGCAGAATTAGTCGGAAAAGCCGTATTTCAGGCAGATTTACCCGAATTACCCGAATTAGATAACTTATTTGCCCCCGAAGGAGTAATTGCCGAAGCCCAAGCATTAGCAGCCGAGGCTTTTGGTGCATCACAAACTTGGTTTCTTGTCAATGGTTCGACTTGCGGCGTGATGGCAGCAATTTTGGCTACCTGCGGCGCTGGCGATAAGATTATCTTACCGAGAAATATACATCAATCAGCGATCGCGGCTTTAATCCTTTCCGGGGCAGTGCCAATTTTCATTAACCCAGAATACGATCCTACCACCGATCTTGCGCTGAGTATCGCCCCAGAAGCCCTAGAAGCCATCTTAAACGAGCATCCGGAGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAGCTAAAATCCCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 5268-11863 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAHBQ010000029.1 Oscillatoria salina IIICB1 scaffold00024, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 5268 37 100.0 35 ..................................... AAATAAAATCCTCTTTCAAAAGTAGAGTCGCCGAA 5340 37 100.0 35 ..................................... TCTTAATATGTTTAGATTCATGAAAAATTTCCCAC 5412 37 100.0 35 ..................................... CTCCAGAGTCCAAGCAGAGAGTAATAAAAGTATGG 5484 37 100.0 35 ..................................... ATCAAAAACATGGTCGATATTATCGACGGCAAAAG 5556 37 100.0 35 ..................................... TTCAGTCTACCAATGACTCTATAAGCTAAGGGAAA 5628 37 100.0 38 ..................................... AATCATAAGCTAAGAATAGAACGAACGATAAACTGAAG 5703 37 100.0 37 ..................................... ATTCAGGCGATCGCGCAACCACAAGATGAAACGAGTT 5777 37 100.0 36 ..................................... ATTTTACACGGTTATACTGACGATAACCCATGCCAT 5850 37 100.0 36 ..................................... CATTTGATTTCTTTGCGCGTAAATTTGGAATTGATT 5923 37 100.0 37 ..................................... AAACCATGAAAAGCAAAAAAGTTACACGCGATCGCCT 5997 37 100.0 35 ..................................... TTCGTACTGTTCCATCAAGGTCAAGAAATAAAATT 6069 37 100.0 36 ..................................... ATGCAAAGCGATCGCTCAGATCGAGATATGGCAACT 6142 37 100.0 32 ..................................... TCGTTGATCACGTCGTTTAGTTTATTGTAAAA 6211 37 100.0 36 ..................................... ACGCTACTGGTTCTTTGTAATTAATTAATTTGAGGT 6284 37 100.0 35 ..................................... ATCTTTCGACGGTATCAATTTCGGCGGGAATTTGC 6356 37 100.0 34 ..................................... CAGCAACTAAAATGGCTAAAGTTTCTGGTGATTC 6427 37 100.0 37 ..................................... CCATAATCGTCAGCATTTAAATGATCACGGAAGATTT 6501 37 100.0 36 ..................................... TCACAGCAAATATGCCGAGAAGCTTGAATACTGGAT 6574 37 100.0 35 ..................................... TTGCTTCTAATCCTGCAACTTTTAGGGAAGCTTTT 6646 37 100.0 36 ..................................... CTTTAATAGGCGCAAAAACAGGATCGAAAATATTTA 6719 37 100.0 36 ..................................... AATTATCAACACCTTTTCTTAATTGATCGAATACTT 6792 37 100.0 37 ..................................... ATGAAACTTATGCTTACGGATGGTCAAAAAAAGGAGA 6866 37 100.0 37 ..................................... ATATTCTTTAAAAGTTAAACAACACTATCTAAGTTTA 6940 37 100.0 35 ..................................... TACAAAAAAATTAAATCCTGGTATCCTGACGCAGA 7012 37 100.0 34 ..................................... AAGCCTTCATCGACTGAAGCGATCGCCCTTCTTT 7083 37 100.0 36 ..................................... ATATTTATTGACAGTTTCTTCTAATTCCTCAGAAGT 7156 37 100.0 40 ..................................... AGAAAAACGGCTAGACGCAACTAGCCGACCTACAAGCAAA 7233 37 100.0 40 ..................................... GGGCAGGCAGTTTGGCTTGGATTTCGGGAGCTAATTCGAC 7310 37 100.0 36 ..................................... ATTTGTTCGGTTGCCGTGATTATGCCAAAGTCGCGA 7383 37 100.0 33 ..................................... CTAAAATCTCCATCGCTGTTGGTGCTCCTTCTT 7453 37 100.0 36 ..................................... TCCAAACCTTCAAAATCACTATTTACCCGTGCTGTT 7526 37 100.0 33 ..................................... AATTCACGACTTCCTATAATGGCGATCGTCATT 7596 37 100.0 35 ..................................... CAATGATATTGCTGACTGGAAATACAGGACGGAAG 7668 37 100.0 36 ..................................... CAGCAGTTAAATCTATTTCCTGGGGTTTCTCAGGTT 7741 37 100.0 34 ..................................... GAATTATTTGAGATCGACGAAGCGCAGTTCCTAC 7812 37 100.0 37 ..................................... TTTATCTTTGTTGCTTAATATTTGTTTGGCTACAGCT 7886 37 100.0 37 ..................................... ATATTTCGGCTAAACCGCGTTGCGAACTTTTCTAATA 7960 37 100.0 35 ..................................... AAGAGACAATCGAAGTCGAAGCAATTAACCCTGAA 8032 37 100.0 35 ..................................... TTATTCCCCCACTTCTTAGGGATGGGAGAATGATA 8104 37 100.0 38 ..................................... CCGAATCATAGCACCCAATTAAGGGGTGCATTGTCCAA 8179 37 100.0 35 ..................................... TTATAAAGTCTTTCAATCTCACTAAGAATCAAATT 8251 37 100.0 35 ..................................... TTTTCTGCGGTCTCATCAATTTGGGTTTTGGCAGA 8323 37 100.0 35 ..................................... TCTCATTCGCTTTTTGTAAGGAAATTATTCCCGAA 8395 37 100.0 36 ..................................... CAACATTAGATCGCTTTCCTAATCAAAATACCGATT 8468 37 100.0 34 ..................................... TTACGCACAGAAGATGTAAGTTCCACATCAAGTT 8539 37 100.0 38 ..................................... ACTAAAATCGGTTGTGGATTAGCAGGATATTCGGAGTT 8614 37 100.0 36 ..................................... ACAAATCGCGATCCATTTCTGAGAATAGTCGCTGTT 8687 37 100.0 45 ..................................... CCTCAGATTACTTTGCACTTTTTCCCTGCTTATGAGTTTGAAGGG 8769 37 100.0 34 ..................................... TCCAAGGAAGTTTGTATGCCTTCGACCCTGGCGA 8840 37 100.0 36 ..................................... TAGTTGATAATGGTATTGGAGTTGATGTTACTTTAT 8913 37 100.0 36 ..................................... TTAAGGAAACTATTAATCAAATCAAATCAAGATTAA 8986 37 100.0 36 ..................................... GAAAATCCATCAACGAACAACTCGATAAACCTTGAT 9059 37 100.0 37 ..................................... TAAATATTTATGAACATGGAGAAAAGGTATTAGTAGT 9133 37 100.0 36 ..................................... AAATCCATTCATCCGGTTGAGGAGAACTAATTTTGT 9206 37 100.0 35 ..................................... AGCTATGTTCAGAGCTTTGAATGTAGTTATGAACG 9278 37 100.0 35 ..................................... CTCCAGGCATCTCTATCTCTCGGTGGAACGAATGA 9350 37 100.0 36 ..................................... GAATCTAAATCTGTAATTTCAGTATAGGCGATCGGT 9423 37 100.0 35 ..................................... CCAGGATCGAAATAATCTTGAACGTAAGTTGAAGT 9495 37 100.0 37 ..................................... TTGACCTTTTCTTGTTTTACGCCATTTATCCCAAAGA 9569 37 100.0 34 ..................................... TCAATAACAATAGATGACTGTTCCATTAATGGAT 9640 37 100.0 36 ..................................... ATATTTTTGCAGAGATAGCAAAAAATATTGCTAACA 9713 37 100.0 35 ..................................... CAAACTTTCATCCGGTTACGTTTGATACAATGGCA 9785 37 100.0 35 ..................................... AAAAAATTGGCGCGTTTGCTACTTACGGATTAAAA 9857 37 100.0 37 ..................................... ACAGACAAGTGTTTAGCCGAAAGATGTGCAATTCTAA 9931 37 100.0 32 ..................................... CAAAACCTTTATCAGATTGTGTAAAAGTTGGG 10000 37 100.0 34 ..................................... TAGCAATATTTTTTTTGGGGTCAAAACCTTCAAT 10071 37 100.0 35 ..................................... ACTTCAATTGGGTTAACTTCACCTCTTACCTATTT 10143 37 100.0 37 ..................................... CTGTAGGATTGGCTAAAATTGCATTAAGATGGTAAAA 10217 37 100.0 35 ..................................... AAATTCAACAATTTTAATGAGTATTAGTTACATTT 10289 37 100.0 38 ..................................... TGTATTGAATTGCGGCGGTTTGCGCCTCTGAAATGAGT 10364 37 97.3 33 ....A................................ ATAGAATACATTGATAAAGAACCATAAAGAGGA 10434 37 100.0 35 ..................................... CCTTCTCTAATTACACAATCTGGCGTAGTTCCAAT 10506 37 100.0 33 ..................................... CAGATACCGTGCATTATTATCTAGTAGATATGG 10576 37 100.0 38 ..................................... GACCAGCCAAAGCCAAAAATTTTCCTCAGTCGCCACTT 10651 37 100.0 41 ..................................... TTATAATAAATATCTTGAGGAAACCGAAAAGGAAATGACTG 10729 37 100.0 36 ..................................... AAAGTGCTAGGCTTGCCAGATCGCAAAGTTAAGGCA 10802 37 100.0 36 ..................................... TTCCATTAGTTTCACATTGCCTACAATCGGTAATTG 10875 37 100.0 35 ..................................... ATAAATTGTCTTGTATTCTTAGCCAAATATGATTG 10947 37 100.0 36 ..................................... ATGAAAGCCTCGCTTATATTGATGTTGGACGCAAGC 11020 37 100.0 34 ..................................... AATTTAAGTCCCTCACTGGTGGGGATAAGTTACG 11091 37 100.0 34 ..................................... AACCGATTCTAGCCGATGGAGACAAAATTGTCTA 11162 37 100.0 37 ..................................... ACAGGAAATCTGCAAAAACTGTCGAGTGAAAAGTTAG 11236 37 100.0 36 ..................................... GAATATTTTTTGACCTCAGACCAACCTAAAACTGAG 11309 37 100.0 35 ..................................... ATTTATTGTGTAAACAATCTCAGACCAAGCAAAAA 11381 37 100.0 39 ..................................... TTAATTTATATTAATTTATTTGATTGTTTGGCGATCGCT 11457 37 100.0 36 ..................................... GACAAGCCCTCCAATGGATTATCACCACTTTTATAC 11530 37 100.0 39 ..................................... TTTCCGGAAATATCGACTTCCTCAACAAAAACTTCTCCG 11606 37 100.0 38 ..................................... AATCTTAATCGGCACAGTATGCAGTAATTCCTTTGGTT 11681 37 100.0 38 ..................................... GATTGAATGATTGTGATTGTGAAATAAATAATGTAGAA 11756 37 100.0 34 ..................................... ATGCAAACACTCGCGATCGCTACAAAAATCATTC 11827 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 91 37 100.0 36 GTTTCCTATTAATGAATCCCGGCTACGGGATTGAAAC # Left flank : TCACTGGGCACAGTATAGTGTTTTCGAGTGTTTTTTGACCGCGATGCAGTTTGCCAAGTTACAACAACGTTTAGAGACGCTGGTGAAACCCTCTGAGGATTCAGTTAAAATCTATATCCTTGATGCTAGTTCAGTGAAACGAACTATTACCTATGGGGCGGAGTTACCCAGCCAGGAACAGACAATTATTTTATAGGAGTATGGCGCGGGAAAACCCCGTTCTTCAGGACACTGGATGTACCTTGCGCCTTAAGTTCCACTCAGATAAAAAAGTGTTATGATTGAGTCAGAATTTCGTTCTTGACCAACCGAAGCGGGGGCAAAATCCCTAGGAAGTTCGTCAAAAATCCCAGAACCTTGAAAAATCAATAGTTTAGGGTTTTTGTTTTAGTAAGAGTGTCAGTTGCTAATGTATTTGAGGAGTCAATTTTGAAGAAAAATTTGACATCCGTCAAAAGTAGGCAACAATATCTCTGCTAGACTAGGTTTCAGATGGCGCG # Right flank : CCTAAGACCGGGGTTAGTCGTGATTACCTCAACTTAGGGTTTGCTGAAAAAGTAACCTGAAAAATTAGCTCGATATAAGGATAAGATTTTTCTGAAAAACTAACGTTTCACATAAGCTCTAATCATCAAAAAGACCAAAATGAAGGCGAATTTGCAAAAAGGAGAAAAAATCCACAAAAAAAGCCAGTAAACCTGCCTAAGCAGGGTGGAAAGATTGATAACTAAAAAGCTAATTGCAATGGCTGTTTCTGAAATTTCTCGCTCGTTTTGCCATGATTCGAGCTAGACCATATCTTCTTTTTCCTTGACCAAATTTACCCTCAATCTCGTTACGAATTCTTTCGTCTAATTGGGCTTGCTTTTTAGTTTCTTTACTCACATTTTTCGGTGGTCTTCCCAGAGGCGGACCACTCAGCCTAATTCCTCTCTCTTTACACCAAGCTCGATTTTGACGAGTCCGATAAATTTTGTCCACATGAACCGATTCTGGATAATAACCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCTATTAATGAATCCCGGCTACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.50,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 62034-60162 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAHBQ010000029.1 Oscillatoria salina IIICB1 scaffold00024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================= ================== 62033 35 100.0 40 ................................... TAACTCAGCAGAGCGCACCTGGATATCTAAGGGCACCTTC 61958 35 100.0 32 ................................... TTATCTCCTCAGGGGAGTGAGCCTCATTCATT 61891 35 100.0 39 ................................... ACTTTTTGTTACACTCTTGAGTCACAGTGCGCGTGTCCG 61817 35 100.0 37 ................................... ATATTGGCTTGTTGGAGGACACGGTTAACCTCATCTA 61745 35 100.0 41 ................................... TAGAATTTCAGAATCGTTAGCGTTTAGAAAAAAAACGTACT 61669 35 100.0 40 ................................... CTCCGTCCCTAATTCGGAACGTACTTGTATATCCAATGGA 61594 35 100.0 41 ................................... CAATCTTCCCGAAAAATTGCTTCCGGGGAAGTGCCGGCAAA 61518 35 100.0 39 ................................... AGGTCCGTGCACTCGGTCGCTGGCGGGGTGTTTCCACCT 61444 35 100.0 38 ................................... ATGTCGGACCCCATGTACGATCCCATAGGCTGCGATAC 61371 35 100.0 34 ................................... TCTAAAAAAAATACGTGCCCTGTCTCTTTTACCT 61302 35 100.0 38 ................................... TATTTGTTCTCCGCTCCCATTTACCAAGAACACTTTTC 61229 35 100.0 36 ................................... AAACGAGACATTGGGATTATTTTTTGGAGTAATTTT 61158 35 100.0 40 ................................... TTCTTTATGGCTTGATCTAGCCCTGGCCAACACCGCTGTT 61083 35 100.0 34 ................................... TGAATGTCCAATGGGACTTCCTGGACCTGCTGCA 61014 35 100.0 45 ................................... CCTACGTAAAGCTGAATGTTGACCTGAAGGAGAACTCGATGAATT 60934 35 100.0 41 ................................... CTGCAGAAACAGCAACAGAAATAACAGCCAAAGCCAAACCC 60858 35 100.0 40 ................................... GACCTACGCCATTGACGTAGATTACCACTTTTTGAGGGGT 60783 35 100.0 44 ................................... GTGTCTGGGGGACACCCGTAATACGTAGTAGTGCTACTCTCCGA 60704 35 100.0 37 ................................... ATCTCCCGAACGGGACGGGCTGGCCCCTCGTTCTGCG 60632 35 100.0 42 ................................... CCTGCGTTACAGTCGCGGTGTCCGGCGGACACCCCCAGTATG 60555 35 100.0 40 ................................... AGCAGAGCTCCTCCAATGGCAGCGGATCCGAGAAGAGCAG 60480 35 100.0 36 ................................... GATGCCTCAGTTACTAACTCGAAAGTTCCTGGCCCG 60409 35 100.0 37 ................................... TAGATGGGAGTACCTCCTACCAGTTTGCAATCGTCCT 60337 35 100.0 35 ................................... AATTATCTGCGTACGAGCAGATAACGAAAGTCCGT 60267 35 100.0 36 ................................... TTTTGTCCAATAAAAAGAGAGAACAAGAACAACCAT 60196 35 77.1 0 TGA.C.......AG......A........C..... | ========== ====== ====== ====== =================================== ============================================= ================== 26 35 99.1 39 CTTCTAACTTCTTCGGAAGTTGAACTAATGGAAAC # Left flank : AGTCGTCTACCTCCTCAACTCGAATATCTTTATCCCCGAAGACTTTACCGCCCCAGACAACCGAGGTGGTGTCTACCTCCAACCTTCTGCTTTGAAAATCTTCCTCAAACATTGGCAAACTAAACTACAAAGCCAAATAACTCATTCTCATACTGGCGCTAAAGTTACCTATCAACGCTGTCTGGAATTACAAGTTTGGGAATATCTCACCTGCGTCCTTGGCGAACAAGAAAACTACCGCCCCATCCAGTCTAAAATGTAAATAGCGAGACCCTACCCTCCTAGTTTCCTCATTTTCTCACCCTTTCTGGTAGCAGTCGCGCGATCGCTGAAATGCCCATTCTTGCGTCGAGTGCTACCAACCCCAGTCAGCGTAAGACTTTCAAGCTTCCAAGCGAGGTGATTAATGACATTTATTCTCAATTACTCGGCTACTCCCTTGACCCCCGGAATTTTACTAGGTTATAATCCAGTTACCAAGCGGGTTCTATCTTGACCCT # Right flank : GCGAATTAAAATCCAAAAAAGCTACAAAAGTCACCAAGATTTTTGTAGCTTTTTAATTCAACACCAAGAATAAACACCGCCAACCTTTAACGAAACACCTCAGCAAAACTCGTTATAGCAGAGAACGAATTAGTTAGGACATCCTCATTTTCGGAAAACCTTGCTAGCATAGGCTCTCATCACTGTTTACTGTTTACTGCTATAAAACCCCACTCGTCACCTCTCACCAACTCCCAAAAATTCCCCCAAAAACACCAACATTCCCAACTCAGATACCAACTCATACAAACACGACACAAACGCAAACAAGAACTCAGATACCCCCCCACATCATAGAAACAGAACACAAATCAACAACAAATTATGTCCACCCTCTACATAACCAAACCCAACACCATACTTAACGTCAGTGACAAATACTTCCAAATTCACCAACAAAACCAACTCCAAGCAGAAATACCCATCCACCAAGTCAGCCAAATCATTATCTTCAGCCCCAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTAACTTCTTCGGAAGTTGAACTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 73749-69527 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAHBQ010000029.1 Oscillatoria salina IIICB1 scaffold00024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 73748 35 100.0 43 ................................... CATTCTATGCGGTAATTGTTTATAGCCGTCTGGGTGCGATCGG 73670 35 100.0 40 ................................... AAAGACCCCTCAGATATCCCTCCATTTGGCCCGTTGACGT 73595 35 100.0 37 ................................... TTTAAGGCCGAATTGGCCTCTGCACAAGCCAAAAAAT 73523 35 100.0 36 ................................... AGTTAGCTAGCACGAGGCCGGGGAATTAAATCGCTA 73452 35 100.0 34 ................................... TGGCAAGTGTTGCCAGCAAGCAGAGGAAAGAGAA 73383 35 100.0 34 ................................... TTCCATTCCGCGGCGGGTTCGTCCGCGGCGGGTT 73314 35 100.0 37 ................................... CAGATATTGCCAGCTGGGGCGTTTGCCCCGCATAAGT 73242 35 100.0 34 ................................... AACCTAGTCAAGAGGGCGCTCAGATAGGTTTTTT 73173 35 100.0 41 ................................... TTCCACCAGAATTAATCGAACCTCTCTTCTTAGACTTACTA 73097 35 100.0 36 ................................... AAACCCTTAGGGGTAATCTCAATGCCACCACCCAAG 73026 35 100.0 36 ................................... TTTTTATAAACTAGAGTCTGACCAACTTCCATCACA 72955 35 100.0 36 ................................... AAGGCCGAGTTGGCCTCCGCACAATTCCCAAAAAAA 72884 35 100.0 39 ................................... ATGAAACTTTGCTTTCCTATTTCACGCAGTTTCTCTAAA 72810 35 100.0 44 ................................... TAGAGGTCGGAGATAATCTTTCCGGCTATTGTTCAAACCATTAA 72731 35 100.0 36 ................................... ATTATTGATTGCCTCCTGGGTGCGGTCTGTCGCCCC 72660 35 100.0 36 ................................... CCCGGGTTCAAAGTCCTGGACGATTTGATCATAAAG 72589 35 100.0 37 ................................... CAGTGCACGGCGAGCTGCCGCGACTACGTTCAAGGCC 72517 35 100.0 40 ................................... GAAAACCACTACTGAGGGCTTGCCTAATTGGCCGGCGTTG 72442 35 100.0 40 ................................... AGGATATTTCACTGTATATTCTATTCTATTTTCAATTAGA 72367 35 100.0 34 ................................... AGGGGCCGTTGATTTCCTCACCGGACCGAATACG 72298 35 100.0 38 ................................... CATCTGGGTTAAGGGAATACCACTCGGAAAATCTAAAA 72225 35 100.0 32 ................................... AAAAGCGGAGGGAGTACAATAACTCCAAAAAT 72158 35 100.0 41 ................................... CTGGCAAGAGTTGCCAGCAAACAGAGAACCGAGAATACCGA 72082 35 100.0 39 ................................... ATTCTTCAGGCTTCTCCGGAGAAGGCGGGAAAGTCGGAG 72008 35 100.0 34 ................................... TGGTCCCCGTGTATATGGTCCCCTCGCCCCTCGT 71939 35 100.0 38 ................................... TTGCCACCCTTCATCCCAAAAACTACTATTGTAGCCCA 71866 35 100.0 35 ................................... CGCGGTCCGGGGCTATCTGACGTTGGCCACCACCC 71796 35 100.0 35 ................................... TCAACAACGCCACCCAAGAGGGTAGTAAAAAAGAT 71726 35 100.0 38 ................................... AATTGTCCGTGTTGGGGAGAGTTGGCAGTCGTTTCCCC 71653 35 100.0 34 ................................... GGAAGATCTCCACCGCCACCTGCGTTAGCTGCAG 71584 35 100.0 36 ................................... TCAGGAAAGTTTCAGAAACAACGTTCGAAATTGACT 71513 35 100.0 40 ................................... TTGGCCGCCTTGAGAGCAATATCGTCCGCTTTATACAAAA 71438 35 100.0 38 ................................... TCCAAAGGGACAAGTGTCTGGTTAGTCTGGGAAATTTC 71365 35 100.0 40 ................................... ACCACTGCCACGAGGCAGTGGTTTGTGTTACCATAAAATT 71290 35 100.0 39 ................................... TATATGGACCTCAACTTCAAACCCACTAAAAAGTGGGGT 71216 35 100.0 36 ................................... GCAAACACGCCAATAAAGGTGAAAGCAAAATTGTTA 71145 35 100.0 37 ................................... CCTTGGGGCAAACGTAGTCCCCATGTATGTGTTCATT 71073 35 100.0 41 ................................... TACCACCGAAGCCAATGAGACCGGAAAGAGCAACACCAGAA 70997 35 100.0 39 ................................... TTGTTTGCTCTTCTGAGGAAGTTGTGGTCGAAGACACGC 70923 35 100.0 38 ................................... TAGCTAGCTTGGGAGGGGTCGCACCCCCCTACACAGCT 70850 35 100.0 43 ................................... TTGGCATTAACGAGACCGCCAACGAGACCAGAAACGAGACCAG 70772 35 100.0 38 ................................... TCAACAACACCACCGAAAAGGCCAGCAGAAACGAGAGC 70699 35 100.0 37 ................................... TCGGATAATCTCTTTGATTACCCCGTCTCGTGTCACC 70627 35 100.0 35 ................................... TAGCAATTAGCTGCTTGCCGCTGCCCATGCCTCCA 70557 35 100.0 38 ................................... CTGTTGTCCCATTTTCTAGTGCTCTCGAGATGGGTCTA 70484 35 100.0 35 ................................... CTTTCTGCGTCCATTCGTAGTAGCCAATTCCTGGG 70414 35 100.0 35 ................................... AAGATTTTTGCACTCGGCGGCTGGGGCCGTATCGC 70344 35 100.0 35 ................................... AATATTTAGACCCACTCCACAGGAAACACCTGCTG 70274 35 100.0 39 ................................... ATATGATCTCCCAAAAAAATTTTGGGTAGTCGTACAAGC 70200 35 100.0 40 ................................... CCTGGACGTAAAATGCGTCCGGACTTACGTTGGAGATAGT 70125 35 100.0 39 ................................... TTATCCAGAGAGCTGCGGCATTTTTTGTCCGCTTCTCCT 70051 35 100.0 40 ................................... TTCTAGCATCGGAAATTTTCCCCTCCACAGTTTTTCCATA 69976 35 100.0 37 ................................... CTTCATAGACAATCGCCCCGACGGTTTCTTCCGAGGG 69904 35 100.0 35 ................................... ATGGTCCCCATGTATATGCTCGTTGTTGCTGTTGT 69834 35 100.0 33 ................................... CGGGTGCCTGTGCAACAACAGCGGAAACAGCAA 69766 35 100.0 30 ................................... CGAGAGCCCAAGCCCAAGCCCAAGCCCAAG 69701 35 100.0 33 ................................... ACGCTGTAGCTATTATATTTTTTCTTTGTAACA 69633 35 100.0 37 ................................... CTAGCGGGGTTAGAGTGGCTAGAATGAGAAGGCTCGT 69561 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================================ ================== 59 35 100.0 37 CTTCTGACTTCTTCGGAAGTTGAATTAATGGAAAC # Left flank : CCCGCGGGGGTCTACA # Right flank : AGAAAATAAAAACCAAAAGAAACTGCAAAAGCCAAAAAACTTTTGTAGTTTTTTTTATCTAAATTAATAAAAAAGCTAACCCAACCGCAGAATTAGCCCCACCCCCCTCAAACATTAAACAAAAAATTCCCAAAATCAAATACCAACTCATACATTCACCCCACATACTCAAACTCAAACTCAGATACCCCCCTGGAGAATGAAAAAAGAACCTCCAAATACACAACCAAATGGACATCTCCCTCATACACCTAGAAGCAGCATGGGAAATAGTTCGCCAACGCACCCAAGCCGCAGGAATTGACGGAATTACCACCGACTTATTTAGCGGAATAGTTAACCAAGAACTACCTTTTCTGCAACACCAGCTACAACAAGAAACCTATCTAGCCTATCCAGCCAAAGGCTTTTACCTCAAGAAAAAAAGCGGCGGCTACAGATTAGTAGGAATTCCCACCGTCAAAGATCGTATCGTCCAACGCTTACTCTTACAATCAATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTGACTTCTTCGGAAGTTGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 40877-29906 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAHBQ010000049.1 Oscillatoria salina IIICB1 scaffold00052, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =================================================================== ================== 40876 23 100.0 55 ....................... CTTCTAATATCTCAAAGTTAGATTCATAATTAATCCACCATGTTTTAGATAACCA 40798 23 100.0 53 ....................... GGCTTTATACGCTAAAGTAGTCCTGTGTAGCAATTCTTTGTTTTAGATAACCA 40722 23 100.0 60 ....................... TCAGCCTGCATTTTCTGCATCATGGCAGCCATCATTTCGTCTGTTGGTTTTAGATAACCA 40639 23 100.0 56 ....................... TTGCCTAGGGGAGGGGTAGGGGGTATACCTATACATATAATAGTTTTAGATAACCA 40560 23 100.0 56 ....................... CTTTCTTTTTAGCCTTGTGATACCCTACGGCTGCTTCATGTTGTTTTAGATAACCA 40481 23 100.0 52 ....................... CCATCCTAGGTAGTAATTGTCTATCTTTACTAGAACGTGTTTTAGATAACCA 40406 23 100.0 57 ....................... ACCCCTTACCCCACGAAAGTTTGTGTTGGTCAATCTCTTCCCCGTTTTAGATAACCA 40326 23 100.0 55 ....................... ATTGGGAGTAAGCCTGCCAATCATCCTGACCGTTTTCAGGAGTTTTAGATAACCA 40248 23 100.0 55 ....................... TTAAGTCAAGGTTAACCTTAGCAACCTTGAGTTGCTTTTCAGTTTTAGATAACCA 40170 23 100.0 52 ....................... AATATCTCTCGATTTCCTAAACTTAACCTCACCAATTTGTTTTAGATAACCA 40095 23 100.0 67 ....................... GAGGGTATCATTAAACTGATGATGGATGCTAAATGGTATCCATTCCCAGCTTCGTTTTAGATAACCA 40005 23 100.0 55 ....................... AATCCTTTTCATCTAGGGTCCACTTTAACTCACTTGTGTCTGTTTTAGATAACCA 39927 23 100.0 59 ....................... CCCTTCGTTCCCAATCACCGGACCCGTACCAGTCTATTAACTTGTGTTTTAGATAACCA 39845 23 100.0 55 ....................... GTTGTAGTTGTGTGTTTGTCTGAGGGCAAAGGCAATACCTTGTTTTAGATAACCA 39767 23 100.0 53 ....................... GTCTCCTGTCCCGTAGCAATCGATTAATTTTCTCCATTCGTTTTAGATAACCA 39691 23 100.0 61 ....................... CTCAATCTCAATCTCAACCTTATCCCCATCAGAATCACCATCTGGGTGTTTTAGATAACCA 39607 23 100.0 55 ....................... AGATACTCTTTTGTTAATATAAATGGTTTTTCTTCATCAACGTTTTAGATAACCA 39529 23 100.0 50 ....................... GTTAGAAGTACTGCGTGAGCACCCCCTCCTGTTTTCGTTTTAGATAACCA 39456 23 100.0 56 ....................... TTACCTTTTGATACCTCATTACTACATAGCAGTACAGAAGGTGTTTTAGATAACCA 39377 23 100.0 51 ....................... AACATACTCCCGGAGGTTAGAGTATGTTTCTTTCAACGTTTTAGATAACCA 39303 23 100.0 61 ....................... TCCATCCCTGTATCCTTTTCGGTCTCTTTCGTGTATGCCTCGGCCGCGTTTTAGATAACCA 39219 23 100.0 58 ....................... CTTCCAACCAATACTCTTGGTTGGTTTCCCATTCCTCCCACATGGTTTTAGATAACCA 39138 23 100.0 56 ....................... TTAGCTATAAAGGAATTATCTATTGAAGAACAAATAGAAGAAGTTTTAGATAACCA 39059 23 100.0 59 ....................... TCTTCTTTTTGTGTTTCCCAGTATATATGTACCACATCAGAGAAGGTTTTAGATAACCA 38977 23 100.0 57 ....................... CGGTTTCTAGCTTTAGGTCAATTACTTTTAAACCAGTTGCATTGTTTTAGATAACCA 38897 23 100.0 53 ....................... TAGGGAAATCCCAATCAAGGGTCACCAGCTTGGTGCTGGGTTTTAGATAACCA 38821 23 100.0 58 ....................... TCTGGCCAACGGTTGCCATTACCGCCAGCGAGGATAGATTGAATGTTTTAGATAACCA 38740 23 100.0 50 ....................... GCATAGTCTAATAAGGTATATGTATTGTTATATTCTGTTTTAGATAACCA 38667 23 100.0 60 ....................... GTGAGAGTATGACTCTCACTTGGGAATAAGCAGTTGGTAGGTATCTGTTTTAGATAACCA 38584 23 100.0 51 ....................... CATATTGAACAATGCCATGAAGAGGTCTGCATCACGGGTTTTAGATAACCA 38510 23 100.0 59 ....................... TTAGTAAATATAATCTTGATAATAAATCTTATTATATTTATCCTAGTTTTAGATAACCA 38428 23 100.0 55 ....................... GTTCCGACGAGTGATTGTTTCCCAAAAGTTCCGCTTGAGTCGTTTTAGATAACCA 38350 23 100.0 50 ....................... AAGGCAGTACCCTTTCGACCAGCAACTAATTTCTTAGTTTTAGATAACCA 38277 23 100.0 58 ....................... TTCAATACTTCAACCCCTTCATCCATTACCTTAGATAATTCTTGGTTTTAGATAACCA 38196 23 100.0 58 ....................... AGAGAAATAAAAGTAGAATATCCACATTTATTTAGAGAATTAAAGTTTTAGATAACCA 38115 23 100.0 57 ....................... GAAAAGTTGGATGAAAAGTTGAATGGAAGGAGTGGAAGGAGTGGTTTTAGATAACCA 38035 23 100.0 53 ....................... TTACTATTACCTACATGTACCTACATGAACGTTTGCATAGTTTTAGATAACCA 37959 23 100.0 61 ....................... ATTAATCTCTCCCTATTTTTATTATCTGGGACCTCCTCTAGAGGAGGGTTTTAGATAACCA 37875 23 100.0 56 ....................... TAGATAACTACACCTGCCTTAAGCAGTTCTCTCAACCACTCAGTTTTAGATAACCA 37796 23 100.0 55 ....................... TAAGATGTTCTATTTTCTTATACCAGTATTGTACTCAATTAGTTTTAGATAACCA 37718 23 100.0 57 ....................... TACCTTTCTTCTCAAGAATCTTGTAGGTCTTTTCATCGACTCTGTTTTAGATAACCA 37638 23 100.0 59 ....................... CTTGCCTTGTTCAAACATGCTAATCATTACTTCTGCGGATTTACGGTTTTAGATAACCA 37556 23 100.0 55 ....................... GTTATTAGACTGGTTTGTGTAAAGACTGCGTGGGTGTTGTTGTTTTAGATAACCA 37478 23 100.0 57 ....................... TTCCAGCGACTTGATATCAGCTAGAATACCAGCATACTTGCGTGTTTTAGATAACCA 37398 23 100.0 56 ....................... AAAGATAACATCTTCCTCTTCTTCTAATGAAGCTATAAAAGAGTTTTAGATAACCA 37319 23 100.0 49 ....................... TACTGACCCTAAATCGATTGAGGAGTTATCCTCAGGTTTTAGATAACCA 37247 23 100.0 54 ....................... CTGTAGGCTAAAAATAAGGGAGATTAATTCTCCCTATTACGTTTTAGATAACCA 37170 23 100.0 57 ....................... GAAGCATGAATTGCTTAATGTATTGGATAACAGTAGCAGCCACGTTTTAGATAACCA 37090 23 100.0 53 ....................... TAGATGGTAAATCTGAAATTCTTATGGGAGATAATCCGAGTTTTAGATAACCA 37014 23 100.0 56 ....................... ATGTTCACATATTGGATACCCCTTATGGGGTGTGCTGTCGTAGTTTTAGATAACCA 36935 23 100.0 52 ....................... TTTTCAAGCGCCTTCAAAACTGCCTCCATAGTCTTCGCGTTTTAGATAACCA 36860 23 100.0 58 ....................... GTTGGTAAGTTCATTCTTGTTTCCTTTCTACTAATTTATGTTTTGTTTTAGATAACCA 36779 23 100.0 50 ....................... CCCTGTTTTTCAACAAGATATTTACTAAAAGTTTTCGTTTTAGATAACCA 36706 23 100.0 57 ....................... GAGGCAGACCCACACGCAACAACAACAACAACAACAATCAAGGGTTTTAGATAACCA 36626 23 100.0 52 ....................... ACCGTTTCTTCTTCGCCTTCCCATTTTGGATATTCCGTGTTTTAGATAACCA 36551 23 100.0 57 ....................... CAATTGAAAGGAAACACATCTAATGGCTATCTCTACTTCTTCCGTTTTAGATAACCA 36471 23 100.0 54 ....................... CTCTCTCGTAAACAACGACTTGAGGCAATCCTCTACATGAGTTTTAGATAACCA 36394 23 100.0 55 ....................... CTTTCTACTAATTGATGTTTACAATAGAAAGAAAAAAGACTGTTTTAGATAACCA 36316 23 100.0 54 ....................... ATAGGAAGAATCAATCTCCCTAATATTCTTAGTTATTTTCGTTTTAGATAACCA 36239 23 100.0 59 ....................... TGCTAATGCGTCTTGCGCTTTCTTTTGCCTGCGCAAGACTCTGTTGTTTTAGATAACCA 36157 23 100.0 54 ....................... CTTTTGTATCTGTACTTGGTTAGGCCAACTCTGCACCTGAGTTTTAGATAACCA 36080 23 100.0 56 ....................... TCAGTCATTTTATATCCTCCTGTTTGTTTTATGGCTCCATCCGTTTTAGATAACCA 36001 23 100.0 59 ....................... ATGGTTCATTGTTAACTATGGCAATTAAGTTTAACAATTCTTGCCGTTTTAGATAACCA 35919 23 100.0 54 ....................... ATTCCTGGGATAGGCGCATACTTAAGCTCTAAAAGCAAAAGTTTTAGATAACCA 35842 23 100.0 50 ....................... CCCCTTTTGTTTGAAATGTTATGGAATCTACTGAGTGTTTTAGATAACCA 35769 23 100.0 55 ....................... GATTTTATTGAAATACCAATAGGAGGGATTTGAACCCTCTAGTTTTAGATAACCA 35691 23 100.0 54 ....................... ATGGAGATAATCCAACATGGCTACTCAAACAATCAACTACGTTTTAGATAACCA 35614 23 100.0 55 ....................... GCCCCTGGTCAAAACTGTTCCGACGAGTGAGGGTTTCCCAAGTTTTAGATAACCA 35536 23 100.0 54 ....................... AGCGTTTCTGAAGTCTTTTCTACCTACATCTCTAGCAGCGGTTTTAGATAACCA 35459 23 100.0 53 ....................... ATTTATAAACATCTTCTAACTCTTTTAAATTAGTTACACGTTTTAGATAACCA 35383 23 100.0 52 ....................... ATAGTTTCTCCTACCTCTTTTGGTAGGGTTTAGATATTGTTTTAGATAACCA 35308 23 100.0 58 ....................... AAAGCTTTTGCTAATTTCAAATTGATCCCCACTGTTTCCAGTTTGTTTTAGATAACCA 35227 23 100.0 50 ....................... TTTTGCTTCTACTTTGGTTCCGTTTCCGTTGTTTACGTTTTAGATAACCA 35154 23 100.0 55 ....................... CTCGTTATTTATCTCGTAGATTAGGTTTAGTTCTATTCCTCGTTTTAGATAACCA 35076 23 100.0 55 ....................... ACCAAGATACGTTTGTCCCAATCACCATTCCCGTAGTTTCTGTTTTAGATAACCA 34998 23 100.0 56 ....................... CTGAAGTTGTTGTTTTCAAGAGAAAGAAAAAAGATATTAGACGTTTTAGATAACCA 34919 23 100.0 55 ....................... GAAGCCAATCAGGGATAGTATCCCCCCAGTCTTCTATTAACGTTTTAGATAACCA 34841 23 100.0 54 ....................... ATTGAAATGGTTTAATTGAAACGGATAGATTGTCTTCTTAGTTTTAGATAACCA 34764 23 100.0 55 ....................... GTGGAGCGGGCTTTTCTGCTTTTTCTGCTTGTTCTGCACGCGTTTTAGATAACCA 34686 23 100.0 54 ....................... TTATCAAATACTCTACAGAGGGAGAGATTCCTGAAATTACGTTTTAGATAACCA 34609 23 100.0 54 ....................... TTAAAGGAGCCTACCACTCCTGCAAGGGGGTGAGTATAGTGTTTTAGATAACCA 34532 23 100.0 57 ....................... TCTTCGCTGAGATTAGGGACTTCCCGCGCAATGTTTTAGTTAAGTTTTAGATAACCA 34452 23 100.0 55 ....................... TTCGTAGATGGGATACCAGGGTTGCCCCTGGTCAAAGCTGTGTTTTAGATAACCA 34374 23 100.0 53 ....................... ATAAAGCTTTTAAGGTTGAACCTTTAATATGTCTATCTTGTTTTAGATAACCA 34298 23 100.0 60 ....................... AGTGAAATAGATTCCCTACTAGAGGGAATGGAGTTAGATGAAGAGTGTTTTAGATAACCA 34215 23 100.0 57 ....................... CATCTTCGTTTGTTAATTCAACTGTGGATTTTGGTCCAGTCTTGTTTTAGATAACCA 34135 23 100.0 57 ....................... ACCTCGAAGGTTTCATTTCCTTCCTTGTCTAAGAATACCCCCAGTTTTAGATAACCA 34055 23 100.0 60 ....................... CACTCTCAACACTATAGTCAATCATAATAAACCTCTTTATTTAAAAGTTTTAGATAACCA 33972 23 100.0 57 ....................... CAGCAGTGGAGTATCACGCTGCTAAAAAGAAAAAAAAGAAAGCGTTTTAGATAACCA 33892 23 100.0 58 ....................... AACCCTGTTTGGGTAATGTACTGAACCTCATCCTCTTTCTTCAAGTTTTAGATAACCA 33811 23 100.0 56 ....................... ACATCTGCTGCATAGTCAGATTATCTGTTACCATACCCAGATGTTTTAGATAACCA 33732 23 100.0 54 ....................... TCATTGATAACCATAGAAGTGTATTCTAATGATTCATCTTGTTTTAGATAACCA 33655 23 100.0 56 ....................... TTAGGTGAAACTGACATCTCTGTCTCTGACCAAGACTTGTTAGTTTTAGATAACCA 33576 23 100.0 66 ....................... GCTCTCTGCTCTAATGATTTGAGAACTTTTGTGAGATAGTTGGATTCAATGCGTTTTAGATAACCA 33487 23 100.0 58 ....................... AATCCAAGAGCCTTTAACTCTTTAATTAAGTTATCCAGCTCTAAGTTTTAGATAACCA 33406 23 100.0 58 ....................... AATTTTGTTCTTTTGAAATTTCGTGCCTCTGCTCGATTTCTACCGTTTTAGATAACCA 33325 23 100.0 57 ....................... TTTTTGATTTGTCGCAAATAGCCGCACCGCAATAGCCTAAGTTGTTTTAGATAACCA 33245 23 100.0 54 ....................... GCTCTAAAAGCAAAATCTCTTCTTCCGTTATTTTTGAGTTGTTTTAGATAACCA 33168 23 100.0 55 ....................... AATAAAACCTTTATATAGTAAATGGATAAATTATTATGAGTGTTTTAGATAACCA 33090 23 100.0 55 ....................... CTCTACGTCTATAGAGGGGCCATCTGACCACTCCACTACTTGTTTTAGATAACCA 33012 23 100.0 50 ....................... GGGAGAATCAATCTCCCATTCATTATCTTATTCTAAGTTTTAGATAACCA 32939 23 100.0 59 ....................... GCTTTTTCAACCAGTCCATCCAGGTTCCCGTAAAGGTTCCCTTCTGTTTTAGATAACCA 32857 23 100.0 54 ....................... CATTTTATTAGCTCAAAGTCCTTGCTGGCCTCTTCAGACCGTTTTAGATAACCA 32780 23 100.0 58 ....................... AATGGAGAGCAATCATTGTCAACAACAAATACTTTGTATTGACTGTTTTAGATAACCA 32699 23 100.0 53 ....................... ATTAAACCTCCTAGTTGCTTTATACCTTAGTATAATACAGTTTTAGATAACCA 32623 23 100.0 51 ....................... AGCATTACGCTGAGTGAGCCATTCCTGCACGTACAGAGTTTTAGATAACCA 32549 23 100.0 52 ....................... TAGTGTTACTCTCTTGGTTACACACTATATGTAGATAAGTTTTAGATAACCA 32474 23 100.0 53 ....................... CTTCCCAGAAAGCTTTTGCTAAATTTATATCCATCTTAAGTTTTAGATAACCA 32398 23 100.0 59 ....................... TTCCTCTGGCAGACTAACCTCGATGTTTAGAGGCAGTGTTACCTCGTTTTAGATAACCA 32316 23 100.0 56 ....................... TCTCCTTGTTCCAAGGATGTTTTGGCCATTTCCTCAACACCGGTTTTAGATAACCA 32237 23 100.0 59 ....................... TAGTGAATCCGGAGAATGCCAAAGAAGAAGCAGCAATAATCGATGGTTTTAGATAACCA 32155 23 100.0 56 ....................... AATGTATCGCTCATTCTTTCCCAAACGTTGTTTGCGTTTGTGGTTTTAGATAACCA 32076 23 100.0 55 ....................... GAATATGACACTAGTGCCTTTTGATTACATATCCAACCAAGGTTTTAGATAACCA 31998 23 100.0 60 ....................... AATCAAACTTTGAAATATTAGAACAATGGTTAGAGAGTGATTCAAGGTTTTAGATAACCA 31915 23 100.0 53 ....................... CCTTTGACATTAATGGTAAAGCAGAGAGTGTCATGAAGTGTTTTAGATAACCA 31839 23 100.0 55 ....................... GGAGAGTCTAACAAACTCTTCAATGAGACTCAATACAAGTAGTTTTAGATAACCA 31761 23 100.0 50 ....................... ATCCATAACATAACTAGAGACAGCTAATAGATGACCGTTTTAGATAACCA 31688 23 100.0 62 ....................... AATCCATTGACCTCTGCACATACTGCGAACCTCGTCGGCTACGGCCGAGTTTTAGATAACCA 31603 23 100.0 54 ....................... ACCGTACTCCCCTTCGGGAGCTTTTATTTTCTCCTCCATCGTTTTAGATAACCA 31526 23 100.0 65 ....................... TGCTAAAGAATGGGCTCTTGCCCAAAAGGATTTCTTCTTCCCCAAAGAAGAGTTTTAGATAACCA 31438 23 100.0 54 ....................... TACAGTACTCCTCTAGTGAGGAGTAGGACTGCTCTTGCTTGTTTTAGATAACCA 31361 23 100.0 53 ....................... GGTTGCACAAATTGTCGATCTTTTAACGGATACCGCTATGTTTTAGATAACCA 31285 23 100.0 56 ....................... AATGCGATTAAGGGAGTTGTATACCTTGATACTTCTATGAATGTTTTAGATAACCA 31206 23 100.0 63 ....................... AAGGGATATACAATCTAACGTTTAGAAAAAGGGGAATAAATCAAACTACGTTTTAGATAACCA 31120 23 100.0 61 ....................... TACGCTTGTAAATACTAGATCCATAGACCGCCGAAGGAGTTGGTATTGTTTTAGATAACCA 31036 23 100.0 55 ....................... TAATTTGTTCCATTCAGTTTCGTCAATCGGGAAAAAATGTTGTTTTAGATAACCA 30958 23 100.0 56 ....................... AATGCGATTAAGGGAGTTGTATACCTTGATACTTCTATGAATGTTTTAGATAACCA 30879 23 100.0 63 ....................... AAGGGATATACAATCTAACGTTTAGAAAAAGGGGAATAAATCAAACTACGTTTTAGATAACCA 30793 23 100.0 58 ....................... TTTTTTGTTCCTCTTCATATTACTCTTCCTAAACTGTATATAACGTTTTAGATAACCA 30712 23 100.0 67 ....................... CTTGCGTTTAAATTCGTCCCAGCAGGGACGACGTGAAGAGGAGTAGCTCCCTCGTTTTAGATAACCA 30622 23 100.0 51 ....................... GGTTTAATTAATGCACTTAATCATAATCCTACCGAAAGTTTTAGATAACCA 30548 23 100.0 49 ....................... CAGCGATCGCCTGCCTTCTAACTAATTCTTTGCTTGTTTTAGATAACCA 30476 23 100.0 59 ....................... GTACGTTTTCCATCCTTTCTCTTTCAAAATGATTTCTTCTTTAACGTTTTAGATAACCA 30394 23 100.0 53 ....................... TGGGTCTGGTTCTGGAGTTTCCTCCTTCACCTTTTCCTTGTTTTAGATAACCA 30318 23 100.0 52 ....................... GATTTAGCGAGTAAGTCTGATGCTGATGTATTAGCTCTGTTTTAGATAACCA 30243 23 100.0 57 ....................... GATCAATGAAGGTGACTCTGATGGAGATGGGGTAGGTCTTGTCGTTTTAGATAACCA 30163 23 100.0 52 ....................... TCCCAATATTCAATGTCTACTTCTGGCTCAGTCAGGAGGTTTTAGATAACCA 30088 23 100.0 60 ....................... TAATATCTTTTATAGAAACTAAGTATTCTAGTATTAATGGTCCAATGTTTTAGATAACCA 30005 23 100.0 54 ....................... CAGAACCATAAGGCTGACCTCATGACTCACCTCACCAAACGTTTTAGATAACCA 29928 23 73.9 0 ...............TAAT.T.A | ========== ====== ====== ====== ======================= =================================================================== ================== 140 23 99.8 56 AATCCCCGCAAGGGGACGGAAAC # Left flank : TATTCTGTCTTCGAGTGTCCCATATCTGGCGATACCCTAGAGAAACTTCTAGAAAAACGCTGGTTAAAAGTTTTGAACCTAGAAGAAGACAGCCTTCGCGCTTATCCCTTAGACAAAACCGCTAAAGAACAAACCAAAGTTTTCGGTAGTCCACCACCTTACGAACCCCCCGATTATTTGATTTTGTAACCTCATCACGGCTGGGAAATACCCAGCTTTTTTTTGTAACAGAATGTAAAAAAAGACTTGGCTTTGTCGCAACGAGCAGTAATCAGCAAGACAGAGCTTTTGCGAGGAACTTTGAGATAAAAAGTAAATTGCCCCTTGACTTTTTCGCAAAATTCGACTAGATTATTAAATGAGCTAGTTTTTCGCAATTCATATTCTCAATTGCCAAGCTAGTAAAGTTATGTTAAGTAATTTCTCCGCGCGATCGTGGAAACGTACCTTGAAAACTGCATACAATAATGTTTCCACAACAGTAGGGTTTTAGATAACCA # Right flank : GCATCTGTTTTCGATACAGCCGATAGTTGTTCAACCGCAGAAGTAGAAATTAAATTATAAGCGATCGCTGCTAACTCACAAGAAAGAACTTTGCGCATAATTAATTAGGAATTAGAACGATCGCCCAACACACCCCCGCAAGTCAGCGCCATAATATAGCGTATTTTCCGGTTTTTTTCTAGCTTTGACCGCTATAGATAAATACAGTAAAGTAGTAAATTAGCAATAATTGAATTTGCGCTACATCTAGTAAAACTGGTTGCGAAAACCAGTAAGCTACGCTGTGTGTAGCGTGAGGTTGTCATTTTTGAAGTGAGACTCCATGCCACAAACGATCCCCCAGCCCGAAAGTGTAATTAATCGCCAAAATATTCACGTTATTCGACGGGACGGACAAGCCGCGCCTTTAGATGTTAGCAAAATTAGAAAGGTTGTCCATTGGGCTTGTGAGGGATTAGAAGCCCACGCGATCGCTCTTGAATCGACGCTAAAAACTCGAC # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.78, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 38081-37126 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAHBQ010000056.1 Oscillatoria salina IIICB1 scaffold00058, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================================== ================== 38080 37 100.0 40 ..................................... CACTTAATGTAGCCATGTTTGCCATAATGTACTCTTTGAG 38003 37 100.0 36 ..................................... ACAGGCTAAATAGATTTCTTTACAATGAATTCTAAC 37930 37 100.0 50 ..................................... TTCAGCCTTAAGCCAATCTAGGCGATCGCCTATTTCCTGCGGCGACTCAA 37843 37 100.0 45 ..................................... GGGCGTAAACCGTAGCCGCTTCTATGTAACTCACCATTTTCTTTG 37761 37 100.0 38 ..................................... GGGCGTAAACCCAACCCTTGGTTAAAGATAACTAAATA 37686 37 100.0 43 ..................................... AATCCAAAAGACTTGCTTATCTTCAAAATCGACAATTCTGCCT 37606 37 100.0 52 ..................................... AAATTCTACGTTACCAGCGTCACCTTCCACGGTTGTTAATTGTTTGTCTACG 37517 37 100.0 33 ..................................... CCAAAAGTAATCTTATTCCAGTCGGGCATTGGC 37447 37 100.0 34 ..................................... TGAAAAATGGTTACAACTAAACAAACATACTCAA 37376 37 100.0 34 ..................................... TTGACTACGATTCCATAAGGCAACCGTGGTTTCC 37305 37 100.0 34 ..................................... AGCCATAAACTCAGCTAGGAAGTGATGAGCAATA 37234 37 100.0 35 ..................................... ATCGCTTCTTAATAACAGGCAGTGGCTATTGTTTC 37162 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== ==================================================== ================== 13 37 99.8 40 GTTTAAATCAGCTAAAATCCCTCTTAGGGATTGAAAC # Left flank : TGCGGTAGGTAGATCCGCCTCGATAAGGGGCTTGCACCGCCTGTATTGGTGATGATTTCAGGTTGTCATCGATCATGGGTTCTCGCTCGTTTCTCAGCTTTAATTTCTGCGGAAAATGCGGTTCTGACTTGATTTTAGCTTATCAGTCCGATCGCGCTGTTGCGGGTAACTCTACCACGAGGTGAGGTGGTAGTTTTCGGGACGCGATCGCGCCTCACCCAGACTATAATTTCCCCAAGCGAACATTTTCTGAGGAAGGCGATCGCGCTTTAGTTTGCGGATGGGTAGGTGTACAAAATTGCCTCTCGAAAAAAATCTCTACAACCTATGTGGCTCAATGCTTACAAGTATTTTCTTCTCAAAAACGATCCGCAGCCTTTATCTGGTAAGGGTTTCAGCTATTTTGGCTTGCTATTTCCTCACCCTGATGATATATTTAGAGGAGATTCGCAGAAATGAACCTCGAAAACTACATATCACAACGGTTTCTGGCTACCGCA # Right flank : ATTTAATACTATATGAGGATAATGTTCCCGATCGCGTCCCCGACCCGAAAATCTTGCTACACTTGTGAAAGAATTGTTAAGATTCGTTGACGTTACTCCCTAAATCCATAAATCCATTTTGTTATCACCACCTAAAGTAAAAAAAATTTCCCTCGTATTCTGCTCTCTAGGCTTATTATTAGGGGCAGGATGCACAGGTCAACCTACTCAAGCTGATAGTTCAATTACACAATCAGTTGAGATTGTCGGTTGGGTAGAAAAAGGCAAAATTTCCGGCTTAGACCAAGAGATTAAATTTAAGTTAGATACAGGTGCAACTACCTCCTCAATTAATGCCGAAATTATCGAACAACCCGATGAAGAAACCGAATCTGGCGGAATGATTAAATTTCGTTTCCGCGATGGAGAAGAAGTCAGCCAAGTTTATGAGCTTCCTGTTGCTCGTTGGGTTAAAATCGAAAGTCGCACCCAAGATTACATTCGTCGTCCCGTGGTACGCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATCAGCTAAAATCCCTCTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 42998-43181 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAHBQ010000056.1 Oscillatoria salina IIICB1 scaffold00058, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 42998 36 100.0 40 .................................... CTGAGTGGCACGGATGTTCAAACCGCGCCCACACGAAAAA 43074 36 100.0 36 .................................... TTTTGGGTACCGACCGCTACACCAGTGAGGTTTCCC 43146 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 3 36 100.0 38 CTTTCCCTAACCTCTTCCCCGCAAGGGGATGGAAAC # Left flank : TCGAATGGTTATACCGATTGTATCAAGAACCTTGGCGTTGGCGGCGAATGTTGGCTTTACCTCAATTCGCTTGGCGGGCTTTAGTAGTTCGATGTTAGCTTTAAGCTGATTTTCTCCTCGGCTGGCTTGCGATCGCTGCTAAATTAATACTTATGCTGTTTCAGCAACAATTTTTCCTGTTTTCTCTTGTGGGTAAAATGCCCGCCAGATGGTTAATCTGAGATTCTGTTTGGGTAAATATGAGGAATTGTAAATCAGCCTTGACGAGCGCAGGAATTAGTAATTATGTTAAAGCTGCCAATGCGTCAAAAATTCAAATCGACGCACCTCGGCAAGAACCTTGAAAACTGCATAAATTCGTTGACGTGCGTCGATGCCTTACCCAGTAAGGGTTTCAGACGACAAAAGTTGACTATTCTCAGGTGTCAGAGAGGAAAAATTTGGAGGTGCGTCGATTTGACCTCTGAAACCCGCTCACAGCATGGGTTCTACAGCGAACT # Right flank : CACCAAATGCAATTGTCGTTTAACTCGCACGTAGCGCGAAACTTTTCCTAGCTGTTGAAACAGATAACAGCATTGGTCGCACTTAGCTTAGTTTTCCGTTTACAGGATCTCTTGACGCTCCACGCCCTAGAAGGACGTAGATTCTTCATTCAACGAATCTTCGTTGGCTAACAGGATTTCTCC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCCTAACCTCTTCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 20583-16619 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAHBQ010000065.1 Oscillatoria salina IIICB1 scaffold00071, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 20582 37 100.0 35 ..................................... TCCGCCACAATGGAGGCATAAGCAGATATGAAATA 20510 37 100.0 36 ..................................... TTTAAACTTATACTGGGAACTGCATAAATCCCCTGC 20437 37 100.0 37 ..................................... ACTTCTAATTTAAGGATGCTAGAGCGATCGCCTGAAT 20363 37 100.0 41 ..................................... AACAGCCTGTGCAAAACTGAGATATTTTGAAAATACTCCTT 20285 37 100.0 35 ..................................... GCGTCAGCAAATACCTTTTTGTCCGCATAATCACC 20213 37 100.0 34 ..................................... TAAGCTGTTGCTGCTTTTTGTTGAATCAACTCAA 20142 37 100.0 42 ..................................... ATTCGTTTTTCTAACCGAGAATTGTTACCTATTTAGTAATTG 20063 37 100.0 34 ..................................... CCAATAAACTGCTTCTTTCCAAAAATCAACAACC 19992 37 100.0 34 ..................................... CATTGATTTTCGAGATTATCGCCTCCTCTTGTAA 19921 37 100.0 38 ..................................... TTTTCAATTTGCTTGGGAGTAGCCCAAGTAATTGCTAC 19846 37 100.0 37 ..................................... TTCACCGGAATTACTAGAAGACAGTAACCAAGTGCAA 19772 37 100.0 37 ..................................... AAGATACTTGATCAAGGACAGCCAGGGACAATACTGG 19698 37 100.0 32 ..................................... CGGACCGATATCCTCTGCTACGATGGCAAAGG 19629 37 100.0 40 ..................................... AAATTCAAGAAGGACACGAACTTTCATCGTGCTGCGACCT 19552 37 100.0 34 ..................................... AAAGCGATCGCTGTAAACAACAAACCGATCACTG 19481 37 100.0 32 ..................................... CGCTTCTGTTGCTTCTTCGATATCAGAATCGA 19412 37 100.0 36 ..................................... TAAAATTCTGTTTCCTCTATAACAATCTCAACTCAA 19339 37 100.0 34 ..................................... TTTAGACAGAAGTTTCGGAAGTATGACCATGTTG 19268 37 100.0 34 ..................................... GACTTGACTTACTGCAAACTCTAGACTGTGACCT 19197 37 100.0 33 ..................................... ATTGACTAGATTGGCAAAACCTAACCCATTTTT 19127 37 100.0 41 ..................................... GCATAACGACCAAAACGAAGAAGAATACCCGGATTTTCAGG 19049 37 100.0 37 ..................................... GTGTAGTCCGAAAGCCCCACTAGCGGAAGGTTCTAAC 18975 37 100.0 36 ..................................... AGAGCAGGGTGAGGCACAAAAACAAGACCCCCCCGC 18902 37 100.0 35 ..................................... AGCCGTTTGATTATCGCTATTTTTACTCATATTTT 18830 37 100.0 37 ..................................... AAAATTGTAGAGCCTAGCCAAAAGCTGATAGACACTA 18756 37 100.0 34 ..................................... ATAACACAACAACTAATAAGAGATCATATACCTT 18685 37 100.0 41 ..................................... TTAAAGAGCGAGTATGACAAAGTAGCCGCTAAGATCCAAGG 18607 37 100.0 35 ..................................... GCTTCTAATTGAGTTTGTAGTTGTTCAATTGAAAT 18535 37 100.0 39 ..................................... GAAAACATTGACTGCGATATCTGCGCGAGTGAAGCGAGC 18459 37 100.0 40 ..................................... TTAAGTGACTTGCTTGCTGATGATACCACTCATTACAATC 18382 37 100.0 34 ..................................... TCAATAATTTAGCTTGAGAAGCCTTAATTACTTT 18311 37 100.0 36 ..................................... TTTTCTAACTTGTGGAGAACAAGCGCCTTTCAAAAG 18238 37 100.0 34 ..................................... ATTCTAGTAAATGATACTGATAAAATTTAGCAGT 18167 37 100.0 35 ..................................... TTTTCGCATACCTACGATTCTTTCTAGAATAGTTG 18095 37 100.0 34 ..................................... GCAGGCTTCCCTCACATATCTATTGTAAATTCTC 18024 37 100.0 34 ..................................... AGTGCTTTGATTCAAAATCCCGGTTCTCTTTATG 17953 37 100.0 33 ..................................... CTATAGGTGCAGCTTGGGGAGTCGTTGCTGGAA 17883 37 100.0 34 ..................................... CGCTGCCCAGTCAACCTCCAAGACCACCTAGAAG 17812 37 100.0 35 ..................................... AGAAACTTAGATCGGATACGATTAGTAAGTAGAAC 17740 37 100.0 38 ..................................... TAATTTGGCTATATCATCAATAGTTAAACTTTCACCAT 17665 37 100.0 34 ..................................... AAAATTTCACTGAGAGCGACTAACCCCAAAAGAT 17594 37 100.0 35 ..................................... CTTTTAGCTATAGCTGTCGAGAAATATCTACAGAA 17522 37 100.0 34 ..................................... ATAACTCATCTCTTTAACCTCAATTCAATTCCAC 17451 37 100.0 35 ..................................... GACGGAACTTTCCCTAACACTGGTGTGATTTTCGC 17379 37 100.0 34 ..................................... TTATTGTGAGGAGTTGGAAACTTACCTAGGTAAG 17308 37 100.0 36 ..................................... TGAGTACATCGGTGGTACAAACAAACTTGTGCAGCT 17235 37 100.0 34 ..................................... GCATATCGGTGATACAGCCAAATTAGCTGTTCGT 17164 37 100.0 36 ..................................... GTTGGCGCGATCGCCGCCTTTATGCGGCAAGTTCGC 17091 37 100.0 36 ..................................... CAAATATTTTAAAATCAAAAACTTGATCAAAAAATT 17018 37 100.0 34 ..................................... TTAGATTTAGATTTAATTAAACAATCGATTCAAG 16947 37 100.0 34 ..................................... CCTTTCCGCATTTTTAATTACCTCCTAAAGACTT 16876 37 100.0 40 ..................................... AATTGAAGCAACTTCTCTAGCTTGCAGATCGTCACCAATA 16799 37 100.0 35 ..................................... TGGTAGTTTCCCCTCTCGCGGTGTTATCCTAGCGC 16727 37 100.0 35 ..................................... GCTTTTGATAGGGATGCTAACGGTACAATGATCGA 16655 37 86.5 0 ......................CCC....C..A.... | ========== ====== ====== ====== ===================================== ========================================== ================== 55 37 99.8 36 CTTTTAATCAGCTAAAATCCCTAATAGGGATTGAAAC # Left flank : ATGTTTGTTGTCATCAGCTACGACATTTCCGAAGACAAACGCCGTACCAAAATTCATAACATCCTGAAATCCTACGGACAATGGATGCAGTATAGCGTCTTCGAGTGCGACCTCACCAAAACTCAATATGCCAAACTGCGATCGCGTCTGCGAAAATTGATTCAACCAGAAACCGACAGCATCCGCTTTTACTTCCTCTGCGGCTGCTGTCAAGGTAAAATCGAACGTATCGGTGGCGAAATGCCTCGCGACGAAACAATTTTCTTTGCAGAAGCTGCGGATGGGTAGGTGTAGAAAATGAGTCACTGTCAAAAATCGCTGATTTCCCCTTCTGGTAAGGATTTGAGCGCTCCAATTCGCCAAATCGATCCGCAACCGTTATTTCACAAAGGTTTCAGCGATTTTGACTTGTTTTTTTCTCTCACTCATGATACATTTAGAGGAGATTCGCAAAATCGAACCTTGAAAACTTCATACCGTCTGGATCTCAGGCGATCGCC # Right flank : TCACCTCTTAATCGCTTCAATCTCATTGAAATAAAAATGTCTAGCTGTAGCAATCCAACATTACAGTTTTCCAAATCGGAACATAATTATCACAAAAGAGTCTATTTGTCAAGATTATTTTTAGGGGAAAAGTAAAGTCAAAAAACTCGATCGCGCCTCGATTTAGAATCAAGAGAAAAGCAAATCCACCTATAACAGGCAAGATTAGCCAAAATTTTCAGTAAATTCCTGGGAAAGATTGAAGACAGTTGAACAAAGTTTTGATATCATTTCCAGTCAGTCTAACTAAACTAAGGACAATTGAGTTGTGGCACAAGGCTAGGGAATTGCGCCAAAACAACAACTTCAACCGACTACCCCTTGCATGGAGTTTCCACTAACTGTTTTTTTGATGAAAAAAAGTTGCATGAAATTAAGATCGATGAGGCTCATCAAAAATCGTCAGCACAACAACTATTGGTTTCGAGCTTTAGTAGCAGGAGCGCTATCCACTGGTAGTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAATCAGCTAAAATCCCTAATAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 2072-24 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAHBQ010000073.1 Oscillatoria salina IIICB1 scaffold00067, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 2071 35 100.0 38 ................................... AATCGATCCGCCACGACCCATTATGGTAATGTGCGACG 1998 35 100.0 35 ................................... CGTGTCCGGTGGGCATCCGCGATAAATGGTGATAC 1928 35 100.0 36 ................................... AATAGGCAACAGCCAAAATTTCAGCGTTGTTATCAT 1857 35 100.0 37 ................................... TCTTGTGTCCGGGGGACAGCCCCAGTATGTAGTCGTG 1785 35 100.0 40 ................................... GTTCCTGAACTGGGGTCTCGGTCCCCAGTAATGCTTGAAT 1710 35 100.0 36 ................................... ACGGTCAACTATTTCGGTACCGCGAGGGGTTATGAG 1639 35 100.0 39 ................................... ATTCTGTAGTGGTAGCGCCAGTTTCCTGGGCCAAAACGT 1565 35 100.0 37 ................................... TGGACCTGGCCCTCGTCTTGGAGACGGGGAGGGAAGG 1493 35 100.0 38 ................................... TTTTTTTTAAAGAAAACCCAATCGTTCATAGTGATTTT 1420 35 100.0 37 ................................... AACGGCCAAAATCTTGGCATTGTTAGCATTTAGGAAA 1348 35 100.0 34 ................................... TAGTAAGGGAGCAGCTTAGCTCCCTAAACCACAA 1279 35 100.0 37 ................................... CCGCTGGCCGTCTCGTTTCCAAGTGATGTTCTCGCAG 1207 35 100.0 34 ................................... CCGATAAGCAACATGTGCCCATCATATTCTCCTC 1138 35 100.0 38 ................................... GTACCAGCTAGGTTGGTAACCCTTTTTAACTTTTGGCA 1065 35 100.0 34 ................................... TATTTCCCTGAATCATCAGAACGGACCTGGATGT 996 35 100.0 40 ................................... TGCTAGAATCTTCCCGGGATCCGCAGCATCCAGGAAAAAA 921 35 100.0 37 ................................... GTGGAGTGCCCTAACTGAGGGTACTCGGGATAGGATA 849 35 100.0 41 ................................... GATGTCCAATGGGACACGAGCCTGTGCAACCTCGATGATTG 773 35 100.0 35 ................................... GTGTCCGGGGGACAGCCGTAGTACGTCGTAACGTC 703 35 100.0 38 ................................... CGAGGGGGCTTGAACGCTGTTTCCAGCTATAGCCATCA 630 35 100.0 35 ................................... CGGTATAATTTGCCAGGTATGGCTCCAAGTTTTTT 560 35 100.0 41 ................................... ATGAAGAGCTGAAAAAAGTTGCTTGAATGTTTTTTCGACAC 484 35 100.0 36 ................................... GTTACACCGCGGCTGAGGAGCAGGCTGCTCCTGGCG 413 35 100.0 34 ................................... CATATTGCCCCCGCCTGCAAGCAGTTATTCCGGT 344 35 100.0 36 ................................... CCTCCCAGGCCTTCTTGGCCTCCTCTTGGGAAGCGT 273 35 100.0 38 ................................... CAGAATTGCAGCTTTTTTTTCAGCTGACTCTTTTAATT 200 35 100.0 32 ................................... CGTCATCAGCAGGGGAAGGCCCCTGACCTAAG 133 35 100.0 40 ................................... CCTGTCCAGTTGTTGGGTCAACCTCGCAAACTTGCTTACA 58 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 29 35 100.0 37 CTTCTGACTTCTTCGGAAGTTGAATTAATGGAAAC # Left flank : ACAGAGTACCGAAAACCAGTGGTTAAGAAATTTGCTTTTTCGAGTATCGTGGGGCGCACGAGAATTTACGCTTGGGGAGATATATCCCACTGGAACTAATTGCCGCTCTTGATAAAATTGCTTTTTTGTTAATTTGTCAAGGGAGGGGTCGAATCGGCGAGACTGATTCCTTTTAGTTGTAAGGAGTGTCGTTGAACCAAGAATCCCCGCGCCTTTAGGCAGGGGAGCGTCAAGATGCTCAAGTAACTTAAAAAAGAGAAGAAAACTACATCTAGCCCGCTTCGTCGGGCTTTCTTTCATCCTCATTTTCGAGGGAGTCTAAGAATCGCTGAAATGCCCATTCTTGCGTCGAGTGCTACCAACCCCAGTCAGTGTATGACTTTCAAGCTTTCAAGTGAGACAATTAATGACACTAATTCTCAATTACTCGGCTACTGACTTGACCCCCGGAATTTTACTAGGTTATAATCCTCTCAGTAAGCGGGTTCTAGATCGACCCT # Right flank : CCCGTAAGGCTCCCCCACCCCCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTGACTTCTTCGGAAGTTGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA //