Array 1 4126278-4126010 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033780.1 Citrobacter koseri strain FDAARGOS_530 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4126277 28 100.0 32 ............................ GCAGTATAAATATCAGCGGGACATGATACAGC 4126217 28 100.0 32 ............................ ATAGCAGCGAGGCGCTCCAGTTCTCCGGCAGC 4126157 28 100.0 32 ............................ ATGCTCGCGTACTGGTTCGTGGCGATATCGCC 4126097 28 100.0 32 ............................ AAGTTGATCACCGTTGTTCGCCGTAGCGTTTC 4126037 28 85.7 0 ....................T.C..T.T | ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAACTGCATCACTGGCCCGGACTGAGCCTGGCTTCAGGTAAACATATCCACCGCTGGGAACTCTTTGGTCCACAGGGCGCGCGTGCTGAAGTTCACTTTACACCGCGTTTGATCACTACAGACATGCTGGCGCTGCGTGAAGCGGCCGTTGCGGGCGTCGGCCTCGTTCAGTTACCTGTTTTAATGGTGAAAGACCAACTGGCTGCGGGGGAGCTGGTTGCCTTGCTGGAAGGATGGGAACCCAGAAGAGAGGTGATTCATGCGGTATTCCCGTCCCGCCGTGGATTGCTGCCGTCCGTACGCGCACTGGTGGATTTTTTGACAGAAGAGTATGCGCGGATGGTGGAAGATTAAAACAGAGCGCAATATACCCCTTTTTATTTTATGTTACTAACTTATTGATTTTATTTTATATATACAACTTGGGTGAAAAAGGGTCTGACAGGAAGACGTTGCGTTTTTCTTCAATAAATCAACGTGATTGTCTGATATTATTCCT # Right flank : TGAATGTAGAAGGAAGGGACGCTGCGGGGAATAAAAATAACGTTAATTCGCATCAACGGTATTCATGCAGGAAAGGGACAACAAAAAGGCCGGATAAACCGACCTTTTTTTATCTTTACGCCACCCGGGCGTGAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTACGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAATTCTACGCGGAACATGGTATTAGGTAACGTTTCGAGAACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTTTAAATAAGTAAAGATTTGCGCGTTTAAAACGCAGCAAATCAGGTTTGGCGCATTACTCCGAAAAACACGGCAAAGCCGCACT # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4139553-4137537 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033780.1 Citrobacter koseri strain FDAARGOS_530 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 4139552 28 100.0 32 ............................ AGGTTCAGAACAGAGGCGTATCCACTCAGGGA 4139492 28 100.0 32 ............................ ACGTCATTTTGTTCAATCTCGATTTCCCTGAT 4139432 28 100.0 32 ............................ GGGTATTATTAATGTGCTTGAGAGAGTTCCTT 4139372 28 100.0 33 ............................ GCCGGGCGGCTGGCATTCATCAACCCGCTCACC 4139311 28 100.0 32 ............................ TGGAAGCCGCAGGCAAATTCCCAAAACGCTGG 4139251 28 100.0 33 ............................ CAATAGGCACGAGAACGGCGCACCATTCGATAT 4139190 28 100.0 32 ............................ TCTAATGTGTGGACACAATGTGGACATTCCAC 4139130 28 100.0 32 ............................ TTTGATGGTTTGCCCGCGCATATCAGGAATAA 4139070 28 100.0 32 ............................ AGTACGTAGGTTCGTCTGAGTGGATGCCGGAA 4139010 28 100.0 32 ............................ ACAGCCAGAAAATGGCATTTATGGAACGCTAT 4138950 28 100.0 32 ............................ AGTGACTGCCCACGGAAACAATCATAACTTGA 4138890 28 100.0 32 ............................ AGTTATCGCCCGACAGTTTGGCGCCAGCATCG 4138830 28 100.0 32 ............................ TGGTAATTAGCACGTAATGCATTAGCCGAAGC 4138770 28 100.0 33 ............................ AGGTACAGAGTAAGTCGGCATCGGCCGGGCACA 4138709 28 100.0 32 ............................ TTAAGGCGATACACGCAGCCGCCGATAGTTCC 4138649 28 100.0 32 ............................ TGTCCCGGGGCAGTGGATTGCGTGCAGTAAAG 4138589 28 100.0 32 ............................ CCACACCGAGCGGATTTTGCCAACAATGGCAG 4138529 28 100.0 32 ............................ AGCGACAAGCCGACAGAAGATGATATTTGGGC 4138469 28 100.0 34 ............................ CATCGAGTGTGGTCTGGCTGGTGTTCTCTTTGGG 4138407 28 100.0 34 ............................ ACGATGAAATTCTGTAGCACCGGGCTGACGCGAA 4138345 28 100.0 32 ............................ AACAGGCGTGGAGAACCACGGCGGCACTTTGC 4138285 28 100.0 32 ............................ CGTCAGAATCTGGCGGGGATCCGTCAGTAAAA 4138225 28 100.0 32 ............................ TCAAAAGTCAGATAACCTCTTTGCCTGATTTT 4138165 28 100.0 32 ............................ AGATAAAATGCCCCGGCCACAGGAACCGGATC 4138105 28 100.0 32 ............................ AGCAGAGGTGGCTCACATCGATATAGCCAGGT 4138045 28 100.0 32 ............................ AGATAAAATGCCCCGGCCACAGGAACCGGATC 4137985 28 100.0 32 ............................ AGCAGAGGTGGCTCACATCGATATAGCCAGGT 4137925 28 100.0 33 ............................ CACTGGGACACAGCCCCTTTGGAAACCTTCAGC 4137864 28 100.0 32 ............................ CAAACGGGAAAGTCGATAAAATTATCGAGCTT 4137804 28 100.0 32 ............................ GTATCGCCGACTGCGTCCCGATGCGGGAGAAA 4137744 28 100.0 32 ............................ GCAACTCAGGATGATCCTTGTTCCGGGTTCAC 4137684 28 100.0 32 ............................ AAGAATACGGCGCATCATCGGCGTGAAATCCG 4137624 28 100.0 32 ............................ CGACGCGGAAGATCATAAAATCGCGTGCCGCT 4137564 28 85.7 0 ......................ACC.C. | ========== ====== ====== ====== ============================ ================================== ================== 34 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGATCAGAAAGGCGTTTCCCTGGAAGTGAGTCAGGAAGCGCGTGACTGGCTGGCTGAGAAAGGCTATGACCGCGCGATGGGCGCACGTCCAATGACGCGCGTCGTCCAGGACAACCTGAAAAAACCGTTGGCAAACGAGCTGCTGTTCGGTTCGCTGGTTGGCGGCGGCCAGGTGACCGTTGCTCTGGATAAAGAGAAAAATGAGCTGACGTATGGCTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCCGCGCATTAATCTCGTAACCGGTAAAATCTGAACGCCAGTCGCGTTCAGATAAACTCGCTAAAATCCGTAATCTCTTTTGAGGTTACGGATTTTTTTGCCGTCATGCCCCGGATACCTGGAAACCCTTTTTTTGAGTGTTTTTTTAACGCTATGATTTTTATGTGTTTATATTAGGTGGCGATAAAAGGGTATTTAATCATTTCGTTGATATTTTTCTTTATTAACACCATGATAGCGACGAACTGCTTCA # Right flank : CCACAAATGTAATTATTTATTTTGAAAGCTCTTTTGTTGATTTTTATCATTTCATCTGCCGGAGCCTCATCAGTACTATCGATAACACATAAAATGACGGGGTTTAAATAGATATGTCTGCAAATTCAATTATGCCTTCGGATTTAAAAACCATTCTGCACTCTAAACGCGCCAATATATATTATCTTGAAAAGTGCCGTGTGCAGGTAAATGGTGGGCGAGTTGAATACATTACGAGTGCAGGTAATGAATCATATTACTGGAATATTCCTGTCGCGAATACTACGGCAGTGATGCTGGGTATGGGCACGTCAGTGTCACAGGCGGCGATGCGGGAGTTTGCAAGGGCTGGCGTGATGGTTGGCTTCTGTGGCACTGATGGTACGCCGCTTTATTCCGCAAATGAAGTTGATATTGATGTGTCATGGCTGTCACCGCAAAGTGAATATCGACCGACTGAATATTTACAGCATTGGGTCTCTTTCTGGTTTAAAGAAGAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //