Array 1 221255-218356 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLFY010000002.1 Clostridium perfringens strain QHY-18 NODE_2_length_406179_cov_113.900289, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 221254 29 100.0 36 ............................. GGTTTAACTTGATGCAAATAAGCACTTGCCTGCCCC 221189 29 100.0 37 ............................. CTAGCGACATTGCTATCGGTTAATTTTATTATACACT 221123 29 100.0 37 ............................. TAGATAAACCTAAAACAGAAAGCTTACCCTCTCCCCC 221057 29 100.0 36 ............................. ACTGTGGCATAAGTAATTAATCTTCATATTTGTACC 220992 29 100.0 36 ............................. CCAACAACATCAGGAGCACCAACAACACTGGGAACA 220927 29 100.0 36 ............................. AGGAAATAGATGGATAGGGATAAGAAATGATTATTT 220862 29 100.0 36 ............................. GTTCTAGCATCATAATATAAAGATTTATCTTTCCCC 220797 29 100.0 36 ............................. TTTAGTAAGATGGGTGTTGATACTATGGCTAAGCAA 220732 29 100.0 36 ............................. GGAAAGATATGGACTTGGTTAGTAGATTCTTTAAAT 220667 29 100.0 36 ............................. CCAATAACAGGCGTAAATTTAGGCACTTTAGACCAA 220602 29 100.0 37 ............................. TACTTATGATAGAAGCTTAAAAAACAATATGGTTGTA 220536 29 100.0 36 ............................. GTGGTGTTGTAATAATACCCTCTCTGAGACACCGAC 220471 29 100.0 36 ............................. ATAAATGTGCGGTAATTGATAAGTTGCAGCAAACAG 220406 29 100.0 36 ............................. CAGCCTATTATACCTACAGCTCCAAGACCTAAACCA 220341 29 100.0 36 ............................. GAAATAGCTTGAACATTACTCATTGCAGCTTCAAAG 220276 29 100.0 36 ............................. TATCGTCATGTATACAATAACGACAATTATTACATA 220211 29 100.0 36 ............................. ATTGTTTTTATATAGTTATAATAATGTCTTGAATTA 220146 29 100.0 36 ............................. TTATAAGTTTGCACAAATATACCATAAGAACAACGG 220081 29 100.0 36 ............................. AAAGATGCACAAAAGATATTATGTGAGGAAGGTTTT 220016 29 100.0 37 ............................. TTGGGAAAAGGTCAAAAAGAAGAACTAGAAAGATATC 219950 29 100.0 36 ............................. CACTAATAGTAGAAGCGAAAAATATTAATGTAAAAA 219885 29 100.0 37 ............................. ATGTTTCAAGAACATCATTAAAGCTCGTTATCGCCTG 219819 29 100.0 36 ............................. TTCATTAACTTATAATAGTTATGAACTAAATGCTCC 219754 29 100.0 37 ............................. TTACAAATCCATTCATCACACTATACCCTCCATAACT 219688 29 100.0 36 ............................. AATGGTAATCAAGCCTTATCAGGATATGAATATAAG 219623 29 100.0 36 ............................. TTTAATAAACTCAATTATTTTCATAATAATACCTCC 219558 29 100.0 36 ............................. TATTTTTCTCTTAAAGCCAACAACTCATGTGTCATA 219493 29 100.0 36 ............................. ATACTACCATTAGAAACAGAAAAATTAGGAATCAAA 219428 29 100.0 36 ............................. ATAGAACCACTAAAGCCAGTTAATAAAGAAGAATCA 219363 29 100.0 36 ............................. TACTACAAACATAACCTTACTTAGCACAACGTATTA 219298 29 100.0 36 ............................. ATCATAGTACCCATTATTCCAATTCCAATTGGAAGT 219233 29 100.0 36 ............................. TGAATTACTTCCTGGGAAAGTTTCAGTATAAATACC 219168 29 100.0 35 ............................. AAAGCTTAAAGCTTCTAAATTTAATGAAGCATATG 219104 29 100.0 37 ............................. TGTAAGAGGTAACCCCGCCCGCTCGGGCTTAATTTCG 219038 29 100.0 36 ............................. CATAAGGACGAGTTATACAGTAATAAGGTTACTATA 218973 29 100.0 36 ............................. ACGCCCTCATCGGTATATATTAAGCCATCTACATTC 218908 29 100.0 36 ............................. TGTTTTTATTCTTAAAGATGGAGCTATTATTTCAGA 218843 29 100.0 36 ............................. TAATGTTTTTCCTCCACTTTACTCTTTATAATATTG 218778 29 100.0 37 ............................. ATGTATTGTGATGGTGTTACAAATGCAACTATTTTAA 218712 29 100.0 37 ............................. TTAAAGACATATGATCTAGACAATGAAATGGATGAAG 218646 29 100.0 37 ............................. CTTTCATAGTACTTTCCAACTTTATGCATATAATCCT 218580 29 100.0 36 ............................. GTAGAAGTACCAAATTTAATAAGTATAGAAATATCT 218515 29 96.6 36 ................A............ ATTTTTTGCTCTTACCCTTGCCTTCCCATTTGAGCG 218450 29 89.7 37 A......C...........A......... TCATCTGATAAAACTCTTAAAATAATATATTGATTAC 218384 29 82.8 0 ............T.....T.GG......A | ========== ====== ====== ====== ============================= ===================================== ================== 45 29 99.3 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AAACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGTAATTATTCAGAGTTAGGATTTACTAGAAACACCAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGAAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAAGAGAGAATGAGGCTATTACTAGTTTTTAGCATTTTAAATTTGGG # Right flank : AAATAAAAAAAGCATCTTAAAAAGATACCTTTAAACTTAGAATTTTTTGTTTCAATAGCAAGTGCACCTAATGCAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAACATTGCCATTTCAGAGTGTAATAAATCTTTTAGGCGGTTATAACATAGAGAGTCTATCATACTTAATACTTCCAATATACATGGTAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATAAGTAATTTTAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGATATCTGTCCATTTTTACTTAATTATTAATATATACTTATTAAATTAAATTTAGAACTTTAAATCTAATAATCTATGCATTTAGCAGTTTACATCTAATAGCTCCCTTGAAATTTCCTCAAACCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCATTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //