Array 1 182-805 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLXO010000054.1 Lactobacillus helveticus strain H-9 NODE_54_length_11718_cov_100.933052, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 182 30 100.0 36 .............................. TAGTATTTTAGAAAGAAGACTTATGTCAGTACCTAA 248 30 100.0 37 .............................. TTGATCCGGCTTGCTAGGTCTCAAAAAATCGTTTTTA 315 30 100.0 35 .............................. ACACAAGCAATTATTAACGTGCCAGCTTTAAACTT 380 30 100.0 35 .............................. TTAATTCTTACTAACTTTAAACCTTACGCTTACTA 445 30 100.0 36 .............................. ATCGTAAAAACTCATATCTTGCGCCACCTTTTCATT 511 30 100.0 35 .............................. TAATTCAGGTGGTAACGGAATGCTTGAACCCATTG 576 30 100.0 36 .............................. AAACTTGAATGATCTATAGTACCTCTTTTTGAGTGA 642 30 90.0 38 ............T.............G..T TTTTGAAAGTTTAATCTAAAAGTTTTAGTAGTTGGTAG 710 30 83.3 36 ..C.........TC....G..........T AAAGCCGAATTTTACACCAACTTTACTAAATATGCT 776 29 80.0 0 .A......C..............-A...TT | T [795] ========== ====== ====== ====== ============================== ====================================== ================== 10 30 95.3 36 GTTTTTATTTAACTTAAGAGAAATGTAAAG # Left flank : TGACTAAAACGCTTAAGCTTAAGGCAGTTCAATCAGATCAGACTCTTTTCTATTGAATACTACAACTTGAGTCTAGTCCGATTGGACTTTTTTATTAACTAAAACGATTTAACTAGCACCACGCGTAACTTAATAGAAATGTAAAGATGCTAAGCGTGAAAATATTAGTAAGACACGGTATG # Right flank : TGTGTGATTAAAGTCAATTAAATATAAAACATAAAGATTTATATTTAATTTACGGGAAGGAAACTACAATCAAACATCCTACTAAAATCCTACCAATTAAACTGGTAAAATAGATAAGTAAGTATAGAGAACAATTTTTATAAAAGGGGAATAAAATGGCAGATGAAAAATTACTTCTAATCGATGGTAACTCTGTAGCTTTCAGAGCCTTTTACGCTCTTTATCGTCAACTAGAATCTTTCAAGAGTCCGGACGGCCTGCACACTAATGCCATTTACGCTTTTAAGAACATGCTCGATGTCCTTTTAAAAGACGTTGATCCAACCCACGTATTGGTAGCTTTTGATGCAGGAAAAGTCACTTTTAGAACAAAAATGTATGGTGAATACAAAGGTGGACGTGCGAAAACTCCAGAAGAGTTGCTCGAACAAATGCCTTACATTCAAGAAATGCTGCATGACTTGGGTATTAAAACTTATGAATTGAAGAATTATGAAGCA # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATTTAACTTAAGAGAAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 6208-6418 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLXO010000042.1 Lactobacillus helveticus strain H-9 NODE_42_length_14969_cov_92.304137, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6208 29 96.6 32 ............................C ATTAGGAGCTTTCCCGAATAGAAGATACGAAG 6269 29 100.0 32 ............................. TACTTAAAATTATGCACTACTGGAGGCATTTA 6330 29 100.0 32 ............................. TGTCTATTTTTTCTTTTTGCGCCTCCGTGGCT 6391 28 79.3 0 .....................-CA.C.AA | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.0 33 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : CCTATCTGGGTTTACAAAATATATCCTCGTTATCCGATGTATAAAACAAAATATGTAAAAGCATATAAATTAAAGCCTGGAGACACACCCATAGTAAGACATCGTGGTGTTGACTGGGGTTGGACCGTTGGAAAGTCTTATCGTTATTGTATTTTAAAAGACAGCTTTTCTTGGTTTGATGGCTATTCAAAATATAAATGGGTTGACCAAGGCTTACTTGATGGCTCTATGAAAGATGAGCATTTTGCCTACAAATTCACTTGGAAACAGTATTGTCAATTAATTAAAGCCGGTATCTACACAACAGTACATCCAAAGAAATTATGGAACTCCAAAATTAAGAAGATGATTGAAAGATGGAAGCCTGAGACTGATAACAGCTAATAAAAAAGCCCGCCTACTCAAACTAGCAGACGGGTTGTATTTAACACATTAAAAGAACACAGGTTCACTAAAAAGGAGGTGAACACAATGCCAAAAAGAAAAAAATACCGCTATTA # Right flank : AAAACAGGACTAACTCAACCAGATTAGTCCTGTTTTTCATCTATATTAAAATATTTCTTCGCTGCATCGCTCATGCGATCAGGCGTCCAGACCGGATACCAAACAAATTCAACATCAACATTTTTTACTTCTAGCACTTTTTTAACTGCCTGAGTAATACTATCAATTAGGTAGCCAGTTAACGGACAAGTAGGGGTAGTCAAAGTCACATTGATTAAACAGATTCCATCTTTGTCCAGATCGATTTCATAAATTAAACCTAGATTGACTACATCAACATTCAATTCAGGATCAATAACTGTCGCCAATTGATTGATAATATCGTTTTTAATTGTTTCACCGTCACGCATTTTGTCACGCATCCTTGCCAAAAATTTTAGCTTTGATTGCTTGGCCGGTTGGAGTACCAGCTAAGCCGCCGATTCCGGTCTCACGCAGGGATGCTGGCATTTGATGACCAACTTTTTTCATAGCATCGATACATTCGTCGGCTGGGATCA # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 163-849 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLXO010000060.1 Lactobacillus helveticus strain H-9 NODE_60_length_10899_cov_91.963331, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 163 30 100.0 35 .............................. AAAAAAACTTACATGGAAGTAAGTCAATCAGGTAA 228 30 100.0 36 .............................. AAGTGCCCCTGCGCGCTTATATGCACTCATGCTAGT 294 30 100.0 35 .............................. TTTGCTCACAGCCAGGGCTATGCGATTGATTTTTC 359 30 100.0 35 .............................. TCCGTCGAAGTATTTCATAGCATCGTCTTTCCAGA 424 30 100.0 37 .............................. TCTCACCGTCAACCACAGCAGAAGTCGGGCCATTGTC 491 30 100.0 37 .............................. GATCAGTAAACTTAATTCCGTCTAATCGATAGTAGAA 558 30 100.0 35 .............................. CAGAAGTTGTTGTTGAAGACTTTTCATTTTTAGGT 623 30 100.0 37 .............................. GAAGAAAGTTAAAGAAATATCGAAAAATGGTAAATCA 690 30 100.0 35 .............................. CTTTTAGTAGTAACCACAGAAGTTAAATAATTAGA 755 30 100.0 35 .............................. CTTTTAGTAGTAACCACAGAAGTTAAATAATTAGA 820 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 100.0 36 CTTTACATTTCTCTTAAGTTAAATAAAAAC # Left flank : TTCAATCGAATCCACAAAGGCTTTGGTCAGGTTCAGGATACCTTAGAATCCTACTTTGATTAAATAAAAGATTAAAAAATCAATCTACGAGAAAAATCTATTTACACAAAAAATTTGACAGTTTCCTACTTTCACCCATTGTTTTAGCAACGGCAGAAATACC # Right flank : CAGTTGCAACTACCAGTCCTACTGTATCAATAGATTCAACGGCCCTATCTGTCGACCTAACCAAAAACGCATCCAAAAATCACTAAAATCATTAGACAAATCGCACAAATATCATTGTACCGGCATTTTGCAAATCTGTCGATCTCCCAGGATTTTCTTCGTATCTTATATCGACAGATTCTTCTTTAGAATATATCCGACGTTAAATCAGTTAAATCCTGACCCATAAATTCTTTATCAAGCCAATCTTTATTTCTATTTTTGAATATAATCACTGAATCAACGTTCTGTCGAATCCATCTATCCAACTCATTCTTCAAGCTTTCAAGCTGGGACTTGGTTAGTTCACCTTCGAATACTGAATTTTGAACATGAGTTAAATACTTTTTACATATTTTGAAAACATGTCTACTTACTTTAGCACCTTGTTTATCCATTACGATATCGTAAACCAGAATCACATACATATCTATTACCATCCCATAACATAAGGCTCATAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACATTTCTCTTAAGTTAAATAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 227-915 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLXO010000174.1 Lactobacillus helveticus strain H-9 NODE_174_length_1048_cov_79.548317, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 227 30 100.0 36 .............................. CAGCACAAATTAAATCTGCAAAGGCTCATGGTCTTA 293 30 100.0 35 .............................. ATTAGTAGTGGCAGCTTTCCAGTTGTCATTCATTC 358 30 100.0 35 .............................. GGTGAGAGTGCTGCTAACATCCAATCACTAAATGA 423 30 100.0 36 .............................. TGATGCCATAAAAATTGACTATTTGTGCGGTAGCGA 489 30 100.0 36 .............................. TACTTCTCAATCAGCTTTTCAGCATCTTTTTTATCT 555 30 100.0 37 .............................. GCGATCACTGGACTAAGCACAAAACCACTTCAGTTGA 622 30 100.0 35 .............................. ACTTCCGAAGTACCATTGCCACCAGCCACTGCATG 687 30 100.0 36 .............................. AACGGCATAAACCATTGAGTCGACATTGTCATCGTG 753 30 100.0 36 .............................. AAGCTCCATTAATGCTGACTTAATCCCCCATGCAGT 819 30 100.0 37 .............................. TTATCGGCTTACTGGCTGGCGTAGATTTGATTCTGTG 886 30 96.7 0 ...............C.............. | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 99.7 36 CTTTACATTTCTCTTAAGTTAAATAAAAAC # Left flank : CAATTGATGGCTATTCGCAGAACAATTGAAAGCGACTTTTCACTTCTAACTTATTACAACGCCGAGAACAATCGAGCGCGCAGTTTAACTGGCTTTCAAGCACGATTAGAAATTGCTATTCTGACTTGTAATCTAGCTTATTGTCTAGAACGATTTAACTAGCACCACGCGTATTAAGTTAAATAAAAACTCAAATCTAATTATTGATGATATTGAAAATAGAAGAC # Right flank : TACTTTCGAGACTGTAAAATAGTTTGTGTAAGGATGAATGATTCCTTAAATTAATTTCTTAAAATATTAGAAAAAGGAGTTCCTTTCTCGTATGATTGGTTTGAACAAAAAAACACATACAGAAAGAAGAACT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACATTTCTCTTAAGTTAAATAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //