Array 1 325-56 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHFI01000179.1 Acinetobacter baumannii strain MRSN32304 MRSN32304_MRSN32304_contig00179, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 324 29 96.6 31 ............................A GAATGTCTAAAATATCTGAGGCATCAGCAGA 264 29 96.6 31 ............................G TCATCAATACGCTTCAGTGCATCAATGTCAT 204 29 100.0 31 ............................. AACAGAAGCGCAAAAAAAAGCGTATATCATT 144 29 100.0 31 ............................. TCACCTGCAAAGTAAATCGCATAAATCTCGC 84 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= =============================== ================== 5 29 98.0 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : TCTCCCATTCTTCATCTGACTTCAGAAAAT # Right flank : AATTTCAGCGTCAATAGTCTCAATATGATCGAGTTCTTCATCGCATAGATGATTTA # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4-1352 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHFI01000059.1 Acinetobacter baumannii strain MRSN32304 MRSN32304_MRSN32304_contig00059, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 4 29 100.0 31 ............................. ACAACGCAGTATTTTTGCGATGTTGCAAAGC 64 29 96.6 31 ............................T AATGCTCAAAGTTATAAAAATAAGACTCCTG 124 29 96.6 31 ............................T GTTGGGCCAATAATCAGAGTGTGGCCTACAT 184 29 96.6 31 ............................T CAAGGATTGACTCACAAGATCGGTAATTGTA 244 29 100.0 31 ............................. GTCTGACCATGGCCCGATATTCCCGATCCGG 304 29 100.0 31 ............................. TTAGAACCAAAAGTTACTTCAAAAGAACGAA 364 29 100.0 31 ............................. ACTATTCCTAAAATAATTGATACATAGATAA 424 29 96.6 31 ............................T CTACAGCAGCCGTCCAACGGTGTGTATCGAT 484 29 100.0 31 ............................. TCAACAACAATGGTTAAACTGCCATTAATCA 544 29 100.0 31 ............................. AAGACAGTATTTTGGTAGCGCATCTCCTGCC 604 29 96.6 31 ............................C TTGTACGAGCGTATTAAATGTACCTTCATCA 664 29 100.0 31 ............................. ACCGATGAAGCACGAAACACAATCATGCTTT 724 29 100.0 31 ............................. TACGGCGGATGATGTGGTTCGCCTTCATAGC 784 29 96.6 31 ............................T TTAGCCACAGCACCGTTTACACTTGGAGCAG 844 29 96.6 31 ............................T AGTGCACGTAGGTCATGAAAAGATGGGCGTT 904 29 100.0 31 ............................. GAAGTACGAATCAATGTGAATGAATAACCAA 964 29 96.6 31 ............................G TACAGGGGAATTCACGTAGTGCTGGAACAAT 1024 29 100.0 31 ............................. ATCACCATCATCGGTGGCATTAGCTTCAGAC 1084 29 100.0 31 ............................. TCACCAGTGCCAGTGCCAGTGCCAGTGCCAG 1144 29 100.0 31 ............................. ATATTCAAGAACCAGTTTCAAATATTGTTAT 1204 29 96.6 31 ............................G TATGTAGAGTTGAAATGTAGTCCTGCGAAGA 1264 29 100.0 31 ............................. CCACTTGTCTTGACAGCAACTATTGAATCCA 1324 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =============================== ================== 23 29 98.7 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : TATG # Right flank : | # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [5.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 32-421 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHFI01000060.1 Acinetobacter baumannii strain MRSN32304 MRSN32304_MRSN32304_contig00060, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32 29 96.6 31 ............................T CACAGTATGAAAAGATTGGTGATGCTTCGGA 92 29 100.0 31 ............................. CTTGATGCAGGTCAGTGCAATAAAAATGATC 152 29 96.6 31 ............................G ACATGGCTATGAAGTTTTATACACATACAAT 212 29 100.0 31 ............................. CAACAACGCTGTCAACCTTTAGCTAATAAAT 272 29 100.0 32 ............................. TTAAGCCTTTGATTCCATTGGGTTTTTCTTAG 333 29 100.0 31 ............................. AGAAAGGTCTAGCAATTGGGGCTGTAGGTAC 393 29 89.7 0 ........................AT..T | ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.6 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : TCCCGGAAGGCTTGGCTAAACTTGTACTTTTG # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAGATGGCGTCAATTGAACAAATATAATAATATACTGATTTATCTTAATTAATTTTTATAAAAAAATCCCAGTGTACATGACAGTGTACAAATTATATGTTGCTGGCCTATTTCCTTCGGGTTTGGTTGCTATATACGGAGTACAACTCATGTATTAAACACCTTACTGGCAATCCAGTAACACTACCCTACTCCACCACTTACACAGCATCACTTCGACATCTCGTCAACGCAATTTTGCGTTCGGCATTGTTTTCAAAAGTTTATCCAGAATTAGACGCACCTAAAACCCGATAAAACCCTATCAACTCTTATCATTAGCTCTTAATAAAACGTAGTCTTTTATCCAGGTAGCTACTACGAATTTCTCGTAGTAAGGCACTGTATTTGAAACATGGAAATGAGATTCCTTAAATTAGCGATAAACCTTGTTGTATATAGCTTCAAG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4244-3737 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHFI01000058.1 Acinetobacter baumannii strain MRSN32304 MRSN32304_MRSN32304_contig00058, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 4243 27 75.0 27 T...C.-....A......AG..G..... TTAATGCTTAGCATTGATTGATATGTG 4189 28 85.7 29 ...T.G.............G.......T ATAGGGCAATTCTGATCTTAAGTATTTAT C [4181] 4131 27 78.6 39 ....GC..C.AT...-............ GCCCTATTTTTCATTTTTCCTTCAAAAGTAATTTTGAAA G [4113] 4064 28 85.7 32 C..T......A.C............... CAGCGTTCTGCTTTACCGTTTACATATCGCGG 4004 28 92.9 32 ............CC.............. TTGCTTAGGCAAATGCACTGATTTTAAAGAAG 3944 28 100.0 32 ............................ TATCATGAACATTGTTCCTTGACCCACGGACA 3884 28 96.4 32 .........T.................. ATTCGATAGACTGATTCTATAAGCTTATTTGC 3824 28 96.4 32 ...G........................ TGAGGGTGCCACACATTGGCAGGCTGGAGTGT 3764 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================= ================== 9 28 90.1 32 GTTATTCATCGCATAGATGATTTAGAAA # Left flank : TGCTGCTAAAACTGCGCTAAAGCAATTCAAATGCTCACCTAAATCTACTCTATTTTGAGGATATGGCATGAATGAGCAACCTGTTGTTAGGTTGTGAACTTCATAATCGCCATTTGCTTGAACATTTTGATTGATAATGAATTTAGACATAGTTCTTACTCCTCACAAATAGTAGTGATCGGAGGTAGATCTAGGCCGTGTTGTAGAGTCGAGTATGACAAAAATTTAAAATGTTGTGCTATCATTTGGATAGTCCTTATTTAAGTAGTAATAGCTTTGAAAATGGACAAAAGCAGGTATGAAGTTTGGTCACGGAATACCTGCTTTTTTTTATGCCTTTTCATAAATTAAGATATATTTGTCCAAAATCCTTGTCAAACATTATTTTTATTTAAATAAAATTTTACTATCAATCTTATCTAAGTATTAAGGGTAGTGATTTTTTAAATGAATATTAAGTATTCCTAATTAAGATTTGTTATGATACAACTCTTACATAG # Right flank : ACATTCAAAGAGGCTCATCGAATCCAATCGAATTTTATCATCGCTCAGATGATTCAAAATTTCTCTTTCAAAATTTAAAACGACATGTTTTGTCGTTAAAAGGCCGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAATATTATATTTTTATTACATTCGAACTTTAACAATAAACTATGCATGTCATTCTCATCTCTGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTTTGGATAGCTATGCTATTCGTACAGGACATTCATCTTGGCAAGCACCAATGACAATGGAAGGTTTAAAAGAAATTCGTAGCGCATTAAAAAAAGTAGCCACCCGACAAACTGCGGTAGCTGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTTGGAGCAAAACATAAATTTGCCCATGACGGTGCATATCCAGTTGCATCGACCAAGAAACAGCAAAAGTTATTGATGCTAGATGAATGGGT # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 9800-12229 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHFI01000058.1 Acinetobacter baumannii strain MRSN32304 MRSN32304_MRSN32304_contig00058, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9800 29 100.0 31 ............................. AGTGAATACATCTCAAAACTTACCCCAAAAA 9860 29 100.0 31 ............................. AAACGGATGCTACGTCATAAGGCTTTAATTC 9920 29 100.0 31 ............................. ACAGCAGTAATCGCAGCAGTACCGTCAGTTG 9980 29 100.0 31 ............................. ATGTATGTTTATTTTGATGCAGGCGGTAAAA 10040 29 96.6 31 ............................T AGGGGCATAAGGTGTTGAGCTGGATGCATTG 10100 29 100.0 31 ............................. ATGAGTTTTCAAACGAGGTTTGTGAGCTTAC 10160 29 96.6 31 ............................G ACCACATGTCGATGAATACAACTATGTTGAT 10220 29 100.0 31 ............................. TCACGCAAATTCACCGCGCCGTTTGCACAGC 10280 29 100.0 31 ............................. ATGCTTCAATCCACTCTTGATCAGTGTGACC 10340 29 100.0 31 ............................. GATGTTGTACATGATTTTTCAGGACAACCGT 10400 29 96.6 31 ............................T CTCTAAATAATGCAGGCATTAACTGCTACAA 10460 29 96.6 31 ............................C GTTACAACTTGCAGCACCCACTGCAAATTTA 10520 29 96.6 31 ............................T CACTCACAAGCGGCTCATTCTAATAGCTCGA 10580 29 100.0 31 ............................. CCAAGAGCCTTTATGAGATCAGCGTCGTTCA 10640 29 96.6 31 ............................T GAATACATTCTTGAGCATGAGTCAATGACGG 10700 29 96.6 31 ............................T ACTGGAGTGCCGACCAGTGGAACATGCCTTC 10760 29 96.6 31 ............................T TCTTCTCGAATAGTCACAAAACGGCAGATGT 10820 29 100.0 31 ............................. ATTGCCTTTATGTTCGATGTTTGGCATACGG 10880 29 100.0 31 ............................. ACAACTAAAGTGCAGGCTCTATCGAAAATGA 10940 29 96.6 32 ............................T GAACAGGTGATCGCTTTGTTATCTGCCACGAT 11001 29 96.6 31 ............................T CCACCATAGATTTTAATGTTCTTGTGTTGAC 11061 29 100.0 31 ............................. ACAAGGAATAGTACAACTCCGATCAGTGACC 11121 29 96.6 31 ............................T GTGTAAGCTTGCCGCCTGCAATAACTCGTGC 11181 29 96.6 31 ............................T TGTAACGTTTAGTAATGGCTTCCTGCTTAAG 11241 29 100.0 31 ............................. CCCCGAAGTCACGAATAAACTGTTCTGGTTT 11301 29 96.6 31 ............................C TGCGAACAATCGTGTTATTTATCATGAGCAA 11361 29 100.0 31 ............................. TAGTCGCTTGCGGTACGATCTTAGCTGCACC 11421 29 100.0 31 ............................. AATCAGTTTTAAGGTGTAACTGGTGCAATCA 11481 29 96.6 31 ............................T GCAGTTCTGCGTTACGTGTTTCAGGATGCAT 11541 29 96.6 31 ............................T AAAGGGCGTGGCAAAGGCATTACGTGTGAAA 11601 29 96.6 31 ............................C TCTACACCTTCGCGAATAAGTACGCAGGGCT 11661 29 96.6 31 ............................T TCATGCGTGATGCAAAGCGACTTGCTGCAAT 11721 29 96.6 31 ............................T GAGCAGGTCGGTTATTCTGAACCTGAAAATA 11781 29 96.6 31 ............................T CCAAAATACCTTTGAGGACCTTGTAGAAGCC 11841 29 96.6 31 ............................T AAAACCATTGTTACTAGATGTACCTGTATTT 11901 29 100.0 31 ............................. GTCAGGCCCTAGCTTTTGAGTCACACTTTCG 11961 29 96.6 31 ............................T TCTGCACTCTGAAGATAAACATTACAAGTAA 12021 29 100.0 31 ............................. CAAGCGATAACTTGCCGCCAATCACTGTTTA 12081 29 96.6 31 ............................C TCAAGACATCAAGATCAATAAGACAGTTGAG 12141 29 100.0 31 ............................. ACAACGCAAAATTTTAAAGATCAATAAAACA 12201 29 96.6 0 .....................A....... | ========== ====== ====== ====== ============================= ================================ ================== 41 29 98.1 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCACGACACTATTGCGGATATAGCCAACAGCTACCTCGATCATGGAAATTATATTGCCTATGGCTATGCGGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCTTTACCTATTCTACACGGTAAAACACGTCGTGGAGGACTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTAATGCCAATCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : A # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 10437-10586 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHFI01000063.1 Acinetobacter baumannii strain MRSN32304 MRSN32304_MRSN32304_contig00063, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 10437 30 96.7 30 .............................T AGTAAAGGCCAAGACTACACTCTAAAAAAA 10497 30 100.0 30 .............................. AGGGCGACTGCAAAAAATACTTCTGGACTA 10557 30 93.3 0 ............................AG | ========== ====== ====== ====== ============================== ============================== ================== 3 30 96.7 30 GTTCATGGCGGCATACGCCATTTAGAAATC # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACTAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : ACTATCCAGAAGGTGAAGTGCCAGATGCGAGTTCATGGCGG # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 32-2043 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHFI01000064.1 Acinetobacter baumannii strain MRSN32304 MRSN32304_MRSN32304_contig00064, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 32 30 100.0 30 .............................. TCACTAATTCGCTATTAAGATTCATTCTTT 92 30 96.7 31 .............................A TGTGCAAAATATCAAAAGAAGCCTTATTCTT 153 30 96.7 30 ............................G. GTATTGAAGTTATTTGATGTTACAGATCCA 213 30 96.7 30 .............................A TTGACTTAATAGTTAGGAGTGCCTAATATT 273 30 93.3 30 ............................AA TATTTTTTTTGTAATTACCAGTTTTCTTGG 333 30 96.7 30 .............................G CTACAGATATAACTAATCAGTTAAATAACT 393 30 96.7 30 .............................A TCCATTTTCTGATGGTGGCGCATTCTCTTC 453 30 96.7 30 .............................C AAGCAAATCCCGATGATCCTACAGCACCTA 513 30 93.3 30 ............................AC AAGTTAGAGCTATTAGAAAGAATTATTTAA 573 30 100.0 30 .............................. TCGGGGTGGTTTTATTTTGCCTAAATTAAT 633 30 100.0 30 .............................. GTATTGTTGGGTTTCTAGTTACCAGAGCAG 693 30 96.7 30 .............................G ATTCAGTAGGTGCTAACTGGTATAACTTGA 753 30 93.3 30 ............................CG TTGTTGGGTCTTGGTTGCGTAGTGGCCCCC 813 30 96.7 30 .............................A AACCATTATTAGGGTTTACGGTATTACTTG 873 30 93.3 30 ............................AG TCCATAAGACCCTCCATTTGTTTATATCTT 933 30 96.7 30 .............................C AAACTCACAACCTAGAAAAGATTGCTAAGG 993 30 96.7 30 ............................A. GAAAAAGCCCCATTCGTTGTGAATAGGGCT 1053 30 93.3 31 ............................AC CAAAAGCTTTACGGTAAGACACGTTATGCAG 1114 30 96.7 30 .............................A CGAAAACAAAAGATACTCATGCACCAGAGA 1174 30 90.0 30 ...............T............AA CAGCATTTACACCAGCAACCTTTAAAGCAG 1234 30 96.7 30 .............................G TTACATGCCCAATTGGTTGGCGCATGTCAT 1294 30 100.0 30 .............................. CTAAGCGAAGGCTAACGCTCACATTCAAAA 1354 30 96.7 30 .............................G TAAAACCGAATCCCAAGCTGAATAGGTTTT 1414 30 93.3 30 ............................GG ACATGTGAGCTTCACACCATCCTTCAGGCA 1474 30 100.0 30 .............................. GTTGCGGCTCTCGCATGATGTGGTTTGATC 1534 30 93.3 30 ............................AA CTGAAAAGATGTTGAGTGCAGGTTGTTCTT 1594 30 100.0 30 .............................. GATGCTGAAAACTTCACAGCAGGCAATCCA 1654 30 96.7 30 .............................G TAAAGGATGTGAGGAACGTCGTGAGTGGAT 1714 30 93.3 30 ............................AA CTGACTAGTGATTTGAGGAATGTGCTCACC 1774 30 93.3 30 ............................CA AACACAGCATTATTGGGCCTTCAATACGAT 1834 30 93.3 30 ............................GA TGCAGGCGGAGTCTGCTATGCGACTGGTAC 1894 30 90.0 30 .................T..........AA ATAACCACGGTTATGGTAAGTCACTTTTAC 1954 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 2014 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 34 30 94.6 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GTCTGATATTTCGCCTGATCAATGCGGCCAAG # Right flank : TAAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAATAGACAAAGCCGAACAGCCTGCTGAAGTTGAACAGATTAAACAGTTATCTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGCCAAAGTGACGGTGAAATTACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCTTTAGAGCTTGCTCAAAAAGCAATTGCCGATGGCGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAA # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.23, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //