Array 1 54261-55325 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOEF01000008.1 Allokutzneria albata strain NRRL B-24461 contig8.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 54261 26 92.9 33 ........--.................. GGCGTCCATCTGGGCCGCCACCTGGTCGCGGTC 54320 28 100.0 33 ............................ CTACAAGCACGGCACGCGCACCCCCGCACTGGA 54381 28 100.0 33 ............................ GTAGTCCGCGGTCGCGACGTGCATGCGCAGCGC C [54386] 54443 28 100.0 33 ............................ CGACAGACCGCGCTCCGCGTAGCGCGCGGTGAG 54504 28 100.0 33 ............................ CACCTGTCCGTGCGTCGTGCCCAGGATCCAGCC 54565 28 96.4 34 T........................... GGCGCTGCGCAAGCGCTACCAGCGAGCTTGGGGT 54627 28 100.0 33 ............................ CCGGCCAGAAGGTCGCCACCTTCCGCGACCAGG 54688 28 100.0 33 ............................ CGCCGCCCGGATCGCTTCCGCCTGGCCCGCGTG 54749 28 100.0 33 ............................ CGACCGACAGCGCCGAGAGGTCGACGGCGCTCC 54810 28 100.0 33 ............................ GTCGCTGGCCCGCCTGCCCTGTGTTCGGGCTGT 54871 28 100.0 33 ............................ GTCGAACAGGGCCGCGCCGTCGGCCACGCTCCA 54932 27 92.9 33 .................-.......G.. CAGCACGAGCCTGCCGATGATCTGGTCACCGCA 54992 28 92.9 33 ......G.G................... GCAGATCGACATCCGGATGGAGTTCGCTCGCGC 55053 28 96.4 33 ...........................T CGCGTGGCGGCACTGCTGGACCTCCCGCACGAG 55114 28 96.4 33 ...................A........ CGCTGGCTGCGCCGTCAGGTCGCCGACACCGGC 55175 28 96.4 33 ...........A................ CAGAGCGATGATCAGCGAGCGGGCTGTCGTCTT 55236 28 92.9 34 ........G...............T... CTTCAGGCTCGCCTCGCGTTCCCCGTTGTTGCGG 55298 28 85.7 0 .....................G...CAG | ========== ====== ====== ====== ============================ ================================== ================== 18 28 96.8 33 CTCTTCCCCGCGCGAGCGGGGATGGTCC # Left flank : GGCCGGCCATCCTGCGTCTGGCCAGACTTCCCTGGCTGGCCAAGCGAGAGGCACCTCATCACCTCTTCCGGCTGCAGAGCGCGGTAGGCCACCTACTCAGCTCGCCACAACCCGACACCGGGCTCACACATCTGGCTGCCCAGGCTCGAATGTCGTCTCGATTGGCCTCGATGAACGGATGGTCGCGATCCGTTCCGCTGGTTGAGGTGGCTCGTTCCAGTAGCACGCAGCTAGGAGAGAAGCCGATGGTGATCGGGGCGCGGGTGCCGTTGACACCATTGGCGATGGAGCACCCGAAGCCGCCGCAGTGAGGGGGCGTGACAGCATCGGTGTTCTGCGTGAGAGGAAGCCCTTGCTCGAGACCGTTCCCGACCGTTATGCATCCAGCGACCACAGCGCGATGCTGAACCACACAACGGCCGCACACCCTACCGTCCTACGACGGCCACAAACCCATGCAAAATAACGGAACCAGCCACCAAACCTGCAGTTCAACAAGC # Right flank : GGCGGGAAGTTTGCTGAGTCCGCCGAGCAGGTTGCCCTCACGCACCTTGCAGGTCGGAGAGCCGCGAGACGTTGTAGTCCCGACAAATCCGTGAGAAACACCCTGTCAACGACACACGCTGCTCGCCCAGGGTGACGCTTCATCACGTGCTCATCTACATGCTGGTCGATCTCTGCTGAACTTGGCACGGCTCAGCGTCGTCCGAAGCGGCGGCGTTTGCTGGCGTTGCTCCAGCCTTTCGAGGCAGGTACGGCTGGATCGGCGTCATCGGGTTGAACGGGGCGCAGCATCAGGTTGATGCCCTCGTAGTCCACGGGGATCCAGTTGTGGTCGTGGACTTGGAAGGCCAGTCCTTGTTCGTTGTCCGCGCCGTGGACCATGATGGCTCGGCCGGTTTTGACCATGTCCACGACACGGGCCCACATCAGTCCTCGCACGTGGGCGCTGATTGTGCCGACGAACACTCCGGGTGAGATTTCCAGCAGCCATCGGGTGAGGTG # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCCGCGCGAGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 57655-58417 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOEF01000008.1 Allokutzneria albata strain NRRL B-24461 contig8.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 57655 28 100.0 33 ............................ CCTTTGTGCCACAAGGGAAACCGGAGGTTCGCC 57716 28 96.4 34 ......................G..... GGTGGCGCGGTACTGCCGGATCTCGCCGGGCTTC 57778 27 96.4 33 .....-...................... CCTCTCTCGGGGGCGACGGGAGCTGGAAGCCCA 57838 28 96.4 34 ........................A... TGCCTGTCGGCACCATAGCCGATGGCGTGCCTCG C [57843] 57901 28 92.9 33 ..........................GT GCTGGCCGGTGAGCTGGCAGAGAACTTCGGCCC 57962 28 92.9 33 ...........AT............... CAGGCTCAGTGGCTCGGGCTCGGCGAGCGCCGT 58023 28 96.4 33 ..................A......... ATCGTCGGGACGGCGTTTCAGTGCGACTAGGTT 58084 28 89.3 33 ......................C.T..A CCCGCTGGTGCTAGCGGTTGTCGTAGTCGCGCA 58145 28 96.4 33 .A.......................... CGACTGGGAGAAGCTGGCCAGCACCCGCTTGCG 58206 28 96.4 33 ........................T... CAGCTCGGCCTCCCCACCTACGGGACCAAGGCA 58267 28 100.0 33 ............................ CAGAGCGAGCTGATCCGGGTCGATGACGGCGGC C [58277] 58329 28 100.0 33 ............................ GACCGAGCGGCGCCCGGACGGGAGCGAGAAGCT 58390 28 92.9 0 ..........T.............T... | ========== ====== ====== ====== ============================ ================================== ================== 13 28 95.9 33 CTCTTCCCCGCGCGAGCGGGGATGGTCC # Left flank : CGCCGTGGTTGGCGCCGGGCGCGGTGAAGCTGTGCGAGTCGTGCGCGCTCGGCGTGAACCGCTCGGAACCCCATGGATCGTTCTGCCCGTTGACGAACAGGATTCGCTGCGACTGCGTGCGCACGAGGCCGTGCGTCTTTGCCTGCACCGCCGTGGGTGGTGGTCTGCCACTTCTACGACGTCGAGTCCGGCCGGATGGAACTCAACCAACGAGGCCGCAAGTCGAACTACGAGCGGTTCGACATCCCAATCGCTCGTGATGGTGGTATTGCCGATCTCCTGACCGAAGCACACCATTCCGATCGCAGGTTCGACGTCGTCATCTGCGAATCGATGACCTGGATCGCGCGCAAGATGTACGAGACGCTGTCCGTGTACACCGGCTTCCAGGTGTACAACCGTCGTGCTCGCCGCAGTTGGGGCGGACGAAACAAGCCGAATCCGCCGGAGATGTGGATCTGGTCAAACGAACCAGCTCACGAGCCGCTCATTCCGAAAGC # Right flank : CCAGCTTCGCCGAGATCCAGGCGGCCTCCGGGGCCTCTTCCCCGGATGTCAGCCACGGCGTGCCGGCGCCAGGGTCAGCAGGCCGCAGCCGTATCCCTTGGCGGGGCCGATGCCGTTGATGAGGCTGTGCCGGAACAGCTCGACATCGTTGATCTCCAGGGTGCCTTCGAACACGGCGGTGGCGAGGGTGACTGTGGCGTGGTTCCTGGTGAACTTCAGGACTTCGCGGCCGCGGACGGCGACGTCGGGTTCCTTGTGCGCTCCGGCGGGGATGGTGAATCCGTTGCCGGGGGCGCGGTGGAGCAGCCATTGGGTTTGCTGGTCGACAGTGACGTGGCCGAAGCGCTGCGATCGGGTGGAGTCGCTGGTTTTACGGCGGTTGCCGACGGGGTTGGCCTTGAGGCGAAAGGCCCATACGTCTCCGGTGTTGAGTTTGGCCAGCAGGGGCGTGTAGTCGCGGGTGTCCCAGGTGTGGGTGGTGGGCCAGCCTGCTTGCTCGA # Questionable array : NO Score: 5.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCCGCGCGAGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 66437-67318 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOEF01000008.1 Allokutzneria albata strain NRRL B-24461 contig8.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 66437 29 100.0 32 ............................. ACGGTCCGGCGCCGGACCGCTCCGCACGTGTG 66498 29 96.6 32 ............................G GCCTGTGCCAGCAAGGAGAACCACGATGCCTG 66559 29 96.6 32 ............................G GCGATGCCGAAGCGATCGGCGCCGGTCATCGT 66620 29 100.0 32 ............................. GGCCGGGAATTGGCTGGCCAGCAAGGACGGGC 66681 29 96.6 32 ............................A TCGCTGGTGACCTCGCGGCCGGTCGCATCCCC 66742 29 96.6 32 ............................G TCCTCCAGTTTGAACTGCGCGTTCGGCGCCGG 66803 29 96.6 32 ........T.................... TCCGCTACGGCGTCCCGCTGCCGATCCTGCCC 66864 29 100.0 32 ............................. AACCCGCACATCGATCCCGTGTATCTGCACGG 66925 29 100.0 32 ............................. TCCGCGGACAGAAGCACGAGGTTGGTTGCCTG 66986 29 93.1 32 .........A..................G TGGTTCGTCGCCGCGACGACCCTCGCCGAGAC 67047 29 100.0 32 ............................. ACCACGATCATCCCGGCGATAACCAGCGTGGG 67108 27 89.7 32 ...........A.........--...... GCGTTCAGACACCCAAGAGAGGACACTGGGTG 67167 29 96.6 32 ...........A................. AGCTGGTCCCGCTGCTCATCCGCCAGGGCGAG 67228 29 96.6 33 ...........A................. TCCACGGTCATCGCCGACCCAGTCGGCGATGAC 67290 29 86.2 0 ...G.................A..A...G | ========== ====== ====== ====== ============================= ================================= ================== 15 29 96.3 32 CTCTTCCCCGCGCGAGCGGGGGTGGTCCC # Left flank : CAGAAACCCAGCCACCGCACCGGAATCATCCAGATGCTGGTGCAACGGCAGCCACCCCGTGACAACCCCCCGCTCATCACAGACCGACTTCGCCCACACCGACAACACACCCGCCCGATCCAGCATCGCCCTCCGATCCCGACAGCCAGACGCAGCAGCGCCGTCCACGCGACCTGGATACTCCAGGGGTCTGACACTGTTACCGGCTCAGCGCGCATTCCCCCGATCGAGGCAGCTCTGCTTGCCCGGAACCCAAATTCATCTAGAGCGCGGCCAGGTTGCCCGGACCGCATATCCCCTGCCGAGTCGTCATTCGACGATGCGCTCCAGTGCCCGTACCGTCTGCGCAGCAACCGCTCCCTCAACGACCAAGACAGCCAACATCGACGTCACCTGGCCACCCACGCCCAAGCGAAAACGCCCGCCACAACCAGTCCGAGCACCCCACGAAACCCATGCAAAATGACGGAACCAGGCGCCAAACCTGCAGCTCAACCAGT # Right flank : GTGGCTGCGTTCGTGAAAGTGTTGGGCAACGAGGTGAAGCTGAAGGGCGAACGGAACTGTCTAGGAATGTGCTGAACAAGCAGAGCTCGGCGACGATCAGCACGCCAATACGTCCAGCACCGACTTCGCCAGTTGTGCGAGACAGCAAGAACCCGGGCGGCCCTGTCCTCGCCTTTGTCGGTGACAGCACCGGCAACAGACCCGAGATCAACGCCCACTGCTCGCCCGAGAGCAACTGAAACCGCGACACGCCCCGCAGCCTGCCAGCACCCACCGCACGTATTTGTCAGACATGCCCTAGGTCGATGTCACCGTCCTGGGCCGCCATATCGTTGACTTTCTGCCTGATGCGTCGGGCCGACTCGTCCGGGGGCGACATATGGTCGTGACTGGCGCTGGCATGTCTTGGTTGACTGCAGTCCGCTGACTTCCACTGTTGTACGACCGGTCTCCGCCGAGGGTGATCTACCAGCAGCCGGAGGTCATCCGTCCTGCGGCGC # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCCGCGCGAGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //