Array 1 343349-345695 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYCN01000002.1 Salmonella enterica subsp. enterica serovar Havana strain BCW_2696 NODE_2_length_471387_cov_5.27696, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 343349 29 100.0 32 ............................. CTGCACCTGAGCGCCCCCTCACTAGATGGACT 343410 29 100.0 32 ............................. CCTCGCTGGGGAGAAAAAAAATGACCGAATTC 343471 29 100.0 33 ............................. AGCTCGTTACCGTAGTGGTTGAGCATGACTGGC 343533 29 100.0 32 ............................. CTTCGACAATGTGTCAAGCGGCGCTGGCATGG 343594 29 100.0 32 ............................. GAATTTTTCGAAAAAATTCCGGCGTGTGATAT 343655 29 100.0 32 ............................. AATGCAGTTTCACGCACACCTCGCCGGCAACG 343716 29 100.0 32 ............................. ATGTGTTCGATAAGGCTTATCGTCGCGCATCC 343777 29 100.0 32 ............................. TGCAGGAAACTAAATATTTCATCAGGCTTAGA 343838 29 100.0 32 ............................. AAAAACTGAATCAGGTCGAATTTGCCGAATTC 343899 29 100.0 32 ............................. TTACCCATGACGTAACTTATGACTGCCCATTA 343960 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 344021 29 100.0 32 ............................. ATCGGTATAACGAAACAAAGGCGGCGTTTAAT 344082 29 100.0 32 ............................. GAGGTCATCTACTGCAACAAGACGATTCACAC 344143 29 100.0 32 ............................. ACGCGCAGTCTTATCTTGATTATCAAAACCAG 344204 29 100.0 32 ............................. AGTGCCATTCCATCTTCTATTGGTGAGCGTAT 344265 29 100.0 32 ............................. ATAACAGCACTGGCTTCGTTACTTTTGCCAGC 344326 29 100.0 32 ............................. GGCCACTTATCAGCAAACCGGGCATCCAGAAC 344387 29 100.0 32 ............................. GTTGTCGCATTCCTCGGCGTGCCGATTCACCG 344448 29 100.0 32 ............................. GCAGGAAGTACGCCGGATACATGGCAGCGGCA 344509 29 100.0 32 ............................. GCGGTCAATAATGCAACGCGCAGCATGGGTAA 344570 29 100.0 32 ............................. CAAAAGCTGCTTGGCCGCCGCTGCGGGCGTTC 344631 29 100.0 32 ............................. GGCGCGGATCGCGTCAGGAAGCAAGCCGAATA 344692 29 100.0 32 ............................. GTTTTGCCATGGATGAGGATGGAATTTCCAAT 344753 29 100.0 32 ............................. ATAACAGCACTGGCTTCGTTACTTTTGCCAGC 344814 29 100.0 32 ............................. GGCCACTTATCAGCAAACCGGGCATCCAGAAC 344875 29 100.0 32 ............................. GTTGTCGCATTCCTCGGCGTGCCGATTCACCG 344936 29 100.0 32 ............................. GCAGGAAGTACGCCGGATACATGGCAGCGGCA 344997 29 100.0 32 ............................. GCGGTCAATAATGCAACGCGCAGCATGGGTAA 345058 29 100.0 32 ............................. CAAAAGCTGCTTGGCCGCCGCTGCGGGCGTTC 345119 29 100.0 32 ............................. GGCGCGGATCGCGTCAGGAAGCAAGCCGAATA 345180 29 100.0 32 ............................. GTTTTGCCATGGATGAGGATGGAATTTCCAAT 345241 29 100.0 32 ............................. ATAGTTATTCTGCGTACAGCACGTCAGTGCAT 345302 29 100.0 32 ............................. CTCTGTAATGTTTTTTTCAGCGTCTTCTTTTT 345363 29 100.0 32 ............................. TCACATTGAAATGCTGGAAGACGCTGCCGATC 345424 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 345485 29 96.6 32 ............T................ ATGTTTTGCGAGCCATCAGAAACCTTAAATGC 345546 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 345607 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 345668 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 39 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCACTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTAACTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATTATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTGCCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 361964-363335 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYCN01000002.1 Salmonella enterica subsp. enterica serovar Havana strain BCW_2696 NODE_2_length_471387_cov_5.27696, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 361964 29 100.0 32 ............................. TGGCAGCAGGCAATGAGGCAAATAAAAATTGC 362025 29 100.0 32 ............................. TTGAGCCATTCGCTTTCAATTTTCGGCGCATA 362086 29 100.0 32 ............................. TAGGTGCGGAAATCATCAGACTTATCGCCAGC 362147 29 100.0 32 ............................. ACGTATCTGGCCTAGCCAGACAATACGAGAAA 362208 29 100.0 32 ............................. TAAACACGGCACATTCCGTTCTTTTCCCACAG 362269 29 100.0 32 ............................. GGGAAAACCCAAAAAACGCGTTAAATCTTTTG 362330 29 100.0 32 ............................. ATAATCACCACATCGCTAAAGGTGGCTAACTA 362391 29 100.0 32 ............................. CGTCTAAAAGTCGCGCTGGCAAAACATCAGCG 362452 29 100.0 32 ............................. AGCTTGTGCCCAGCGTTGGTTTGACAAAAACA 362513 29 100.0 32 ............................. TTTACAGGTAAAGAGTGGCAAGAGGCGATGAA 362574 29 100.0 32 ............................. GGGTGATCATGACGACCCAGAGCATATTGCCC 362635 29 100.0 32 ............................. AATGCAGTATATCTGAAACCATTAGCCGTGAA 362696 29 100.0 32 ............................. TATATAGCGCAAATTTTGCGAATTATGCACTG 362757 29 100.0 32 ............................. ACGCCGTGAGGCAGACGAGTCAGGTTGTCGGC 362818 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAGCTGGACAAG 362879 29 100.0 32 ............................. TGCGGCCACGCCCGCGTAGCAGATAGCCGCCA 362940 29 100.0 32 ............................. AATAGCGTTCCTGACGTCTGAATTTCATATCC 363001 29 100.0 32 ............................. TTGGAGACTGTGGGTGTGATCTCCATCGGGAA 363062 29 100.0 32 ............................. GACGTTTGATGGCTGGAAGGTTCTGTTTGAGA 363123 29 100.0 32 ............................. CCTGGAATTGTTCGCTTTCAGTGTCGCTATTT 363184 29 100.0 32 ............................. GCAATCAAATAACGGACGTATCCGCTCAGGTA 363245 29 89.7 32 ............T............GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 363306 29 96.6 0 A............................ | A [363332] ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCTTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //