Array 1 451780-453152 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQEI010000003.1 Salmonella enterica strain L5-36 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 451780 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 451841 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 451902 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 451963 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 452024 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 452085 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 452147 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 452208 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 452269 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 452330 29 100.0 32 ............................. AACCCGGCAGCAGGGGTAATTCATACAGCATA 452391 29 100.0 32 ............................. ATTTGGTGAAGGGCGCATTTGAGGACCCGTTA 452452 29 96.6 32 ............T................ CTTGCAGCCGAATACGGTATAGAGTGGGACGG 452513 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 452575 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 452636 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 452697 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 452759 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 452820 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 452881 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 452942 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 453003 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 453064 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 453125 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCACTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 469412-472372 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQEI010000003.1 Salmonella enterica strain L5-36 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 469412 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 469473 29 100.0 32 ............................. GTTGCGACTAAACCGGACCAGCGCCCGCCCAC 469534 29 100.0 32 ............................. CCAGTGCTCGCTTGCTTCTACCCGTCCCGATC 469595 29 100.0 32 ............................. GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 469656 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 469717 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATATG 469778 29 100.0 32 ............................. GCTTTGCATACGTCACTCATAGACAAATCACG 469839 29 100.0 32 ............................. CGATTCTGGTAACGTCGCTGTACTGCCTGACA 469900 29 100.0 32 ............................. GGCGCATGAAACAACCGGCGGGGATCTCTATT 469961 29 100.0 32 ............................. ACAGCGTTAAAATGACGCCCGACGTTGTGGTG 470022 29 100.0 32 ............................. AGGGCTAACACATCACCATTATTACCAAATTC 470083 29 100.0 32 ............................. GACATTGCCCGCTGGGATGCGCGGCAACTGGA 470144 29 100.0 32 ............................. AATTGCCTTTGCTGCCCGGCTCTTCTACGGTC 470205 29 100.0 32 ............................. AGATGAATAACGCGATTTACGAGGTTACGTAT 470266 29 100.0 32 ............................. ATTAAATACCTGGAAAAATACCCCAAAGGGGC 470327 29 100.0 32 ............................. AAAAATAGCGATAACGCGCCAGATCGTGAGGT 470388 29 100.0 32 ............................. TCATTTTTTATTTTCACGTTCGGCTTTCTCAC 470449 29 100.0 32 ............................. TTAAATCGACCTACCTGTTAAACGCGTCAATG 470510 29 100.0 32 ............................. TTCGCAGTAACAGTGTCGTTTTTATAACCGAC 470571 29 100.0 32 ............................. GCGGCATTAATGCGGGATTGTGTTTTCTGAGC 470632 29 100.0 32 ............................. ACGGCAGAAACAATGGCGTCAGTAGCTCAGGA 470693 29 100.0 33 ............................. CAGTCAATGAGACTTTTCACACTGATAATGTTG 470755 29 100.0 32 ............................. CCCCTATTCCTGATCATCGCGCATTTGGCGGC 470816 29 100.0 32 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTG 470877 29 100.0 32 ............................. GAATTACGTTGCGAACAGCGCGGCGAGAGACG 470938 29 100.0 32 ............................. CGGATTGCATTCAATAAACATGTAAATAGGAA 470999 29 100.0 32 ............................. TTACCGACACCTGCGTGGCTAGCGTTTTTTCG 471060 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 471121 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 471182 29 100.0 32 ............................. CATTGGGTAATTATATTCGCAATTTAAGCGAT 471243 29 100.0 32 ............................. ATATTTTAAACCAGACTGACGCGATGATCGTT 471304 29 100.0 32 ............................. CCATCAAAGCTGCTGCGCTGGTGGCATAACCC 471365 29 100.0 32 ............................. ACTACGCGGCATGGCTGAACCCCGGATTCAAG 471426 29 100.0 32 ............................. CCCCAGGCGGTGCCTACGTCGGATGAAGAGCC 471487 29 100.0 32 ............................. CCGTGGAAAGAACCAGAGCGTTGGTTATTGGT 471548 29 100.0 32 ............................. CTCCCAAACCTCTACAGCGCTACCAACAGGAA 471609 29 100.0 33 ............................. GATCGCCCACCGGCATAAACGCGATAGCCGCGT 471671 29 100.0 32 ............................. CTGTTCCCGATCGCTTTATATCGGGGGCCATC 471732 29 100.0 32 ............................. TACCAGACGGACAGCTACGATACCGCTGACGA 471793 29 100.0 32 ............................. GCAGTACTGGCTCTAAATTTAAAACTGGTCAG 471854 29 100.0 32 ............................. TGGCCCACGTGCGCGGAGACGGCAACCGGTTC 471915 29 100.0 32 ............................. TCTCGACGCCAGATTTAATATTAATTCCCGCA 471976 29 100.0 32 ............................. CAGACGTAGAGATTGAGAACACAAATGACTCA 472037 29 100.0 32 ............................. GATTGCTCAGATTGGGAATTTGACCAGCGACC 472098 29 96.6 32 ........................G.... ACTATTTTTCAGGTGAATTACAGCGCCGCAAC 472159 29 100.0 33 ............................. GCGAAAAATTGACGCTATCAGGGAGAGCGCCGG 472221 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 472282 29 100.0 32 ............................. GCCGTGAACGCGTCGCCCGCTTTTTTGTAGCA 472343 29 96.6 0 ............T................ | A [472370] ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTTTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //