Array 1 108731-108030 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MXLT01000003.1 Salmonella enterica strain BCW_1861 NODE_3_length_420879_cov_2.61779, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
    108730	    29	  96.6	    32	........T....................	GAAAAAAGCAAAGGGGGAGTTAGATGCGCTTG	
    108669	    29	  96.6	    32	............................A	ATAGCCTCGTCGATTGGCTGACGAATAAGCGC	
    108608	    29	 100.0	    32	.............................	CAAAAAATCAGACATGAATCACGTTTTAAATT	
    108547	    29	 100.0	    32	.............................	GATACGCTCATCAAATCCAATCCGCATAGACG	
    108486	    29	 100.0	    32	.............................	TTCATCAGGTAGCTGGCTCTCATGCAGCTTCC	
    108425	    29	 100.0	    32	.............................	ACGATTTCGAACGCGTCAGCGGTCCTGACTAC	
    108364	    29	 100.0	    32	.............................	CCAACAGACAACCAATGCGCAGGGGTAAGGCG	
    108303	    29	 100.0	    32	.............................	CCACGTTCGGCGATGTTGGCCCCATCGGTCCA	
    108242	    29	 100.0	    32	.............................	GCTAAAACGGCGCTTGAGAACAGTATCAATAT	
    108181	    29	  96.6	    32	..........T..................	CTTCATCTCGCAGTACGTAAACGCCTGCATCA	
    108120	    29	 100.0	    32	.............................	AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA	
    108059	    29	  93.1	     0	A...........T................	|                               	A [108032]
==========	======	======	======	=============================	================================	==================
        12	    29	  98.6	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT
# Right flank :  TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT

# Questionable array : NO	 Score: 6.19
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [4-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.92   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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