Array 1 517935-518612 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007171.1 Listeria monocytogenes serotype 1/2a str. 10-0813 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 517935 29 100.0 36 ............................. TCTTTAGTTGTTACTTGTTGGTTAATGAGATCTACC 518000 29 100.0 36 ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 518065 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 518129 29 100.0 37 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 518195 29 100.0 35 ............................. CGCTCTGACCTGTTCCTTGTGCAACACTCGTTACA 518259 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 518323 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 518388 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 518452 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAACGTGTAGTATT 518518 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [518541] 518584 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 11 29 95.3 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 2679124-2677040 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007171.1 Listeria monocytogenes serotype 1/2a str. 10-0813 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2679123 36 100.0 30 .................................... TCGTGATTTCTTCCTCATGCGCGCTTTTGA 2679057 36 100.0 30 .................................... TTATCAGCAATTGAAACTATTAAAAATGAC 2678991 36 100.0 30 .................................... GAATATACAGACAAGATTGACGCTCCTTTA 2678925 36 100.0 30 .................................... CCTAGACCTAGATGCTACTAGAGTGGACGA 2678859 36 100.0 30 .................................... TAATGCATCTTTATATTGATTTACCTCACC 2678793 36 100.0 31 .................................... TGGAAATGAACGATTGTCGGCATTCACGAAT 2678726 36 100.0 30 .................................... AGATATGGGCGAACTACCCGACGACAACAA 2678660 36 100.0 30 .................................... GAAGAAGTCACTAGTTGGGTCAAGCAAGGC 2678594 36 100.0 30 .................................... TAGTGCCAGTAAATTCAGTTCCTCCAAAGG 2678528 36 100.0 30 .................................... TGTAAATGCGTTTAAATCGATGGGAAGCGC 2678462 36 97.2 30 .............A...................... ACACGTGTGGAAGAAGAGGGCTCTGACGCT 2678396 36 100.0 30 .................................... GTATGAAACGGTTAAATGGATCTCTATAGC 2678330 36 100.0 30 .................................... ACCAAGTCTAAGTGTAGACTGGCGTGCGCA 2678264 36 100.0 30 .................................... TTTAATGATTTTCTTTTGCGCGCCGTTGGT 2678198 36 100.0 30 .................................... GAATTTTTTTGTAAGATCGACAACTTTTTC 2678132 36 100.0 30 .................................... TTGATAATGATAAGGCTGTACGGATTATTC 2678066 36 100.0 30 .................................... TAACAGTGTATTTCTATTGCTCGGTGTGTT 2678000 36 100.0 30 .................................... TGGAGATAACGAAGAGTAAAGCGAGGCAGC 2677934 36 100.0 30 .................................... GCGTTGAACCAGAAGGTGGGAAAGAAACAC 2677868 36 100.0 30 .................................... TGGTAATTTAGTATCTATTACGGCTGGGAA 2677802 36 100.0 30 .................................... AGTTCATGCAGATGTTCCAACAGACTATGA 2677736 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 2677670 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 2677603 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 2677537 36 100.0 30 .................................... TAGTTATTTGCTTAGAAATGTCATCCATCA 2677471 36 100.0 30 .................................... CTAGAAGCTTTGACATTAATATTACGCTTA 2677405 36 100.0 30 .................................... AAATAATTTTTTTGATCATGTTGCAACAGC 2677339 36 100.0 30 .................................... TGCAATATTGTCTGGATCTTTTTTCTTGTT 2677273 36 100.0 30 .................................... AGTTAGATAGATAAACAAACTAAACAAAGG 2677207 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 2677141 36 100.0 30 .................................... TGTCTGAATGTAGTTGATATCTTTAACTTG 2677075 36 72.2 0 .........A..CA.....C.....A.C.A..C.TA | ========== ====== ====== ====== ==================================== =============================== ================== 32 36 99.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GAGACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAGGACGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATCCGAATTTTGAAATGAATGTTGACCAAGATAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTTGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATTTTATATGATTATATTCTAAATGCGAGTAAAAATGGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //