Array 1 47059-46634 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUYS01000016.1 Parapedobacter luteus strain DSM 22899, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 47058 46 100.0 30 .............................................. TTATCAATGTTTTTGTAGTAGTCCATTTCG 46982 46 100.0 30 .............................................. TTAATTTCAGTGGTGATAATTATGTAGGTC 46906 46 100.0 29 .............................................. GACGACTGGCGCAACCAAGCGCATCGGTA 46831 46 100.0 30 .............................................. CAGACCGAGCGCCAAGCACCGTAGCTTCCT 46755 46 100.0 30 .............................................. GAGACAATGTTTTTTTCATTGTACATTTCG 46679 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 6 46 100.0 30 GTTGTGATTTGCTTTCATTCTTTGATTTACTGATATTAGGCACAGC # Left flank : GCCTGCTGGGATACCGCACATTGTATTTCAGCATGAACCGTTTCATGGATACGGTCTCCCAGACCAGGCTCGACGGTACATACCTTAAGTGGATCAAAGCCATATCCAACCACAGATTACTTATACTCGATGACTTCGGACTGAAGGCGATCGATGCAGACGCCAGGCTGGCACTATTGGATATACTGGAAGACCGATATGGCAACAGTTCGGTGATTATCACTTCGCAGTTACCGGTGGAGGCGTGGTACAACTTTATCGATGAACCTACACTGGCCGACGCGATAATGGACAGATTGACAGCATCGGCACATAGGCTACCCCTTCAGGGCAAGTCTATGAGGAAGAAAAAAAATCACTAACTTTGAAAACCCAGTGGCGCAGCTGCGCAGATTATTGGCCTCTTCACTGGTGTACTTTCATCCGGAACGGGTGGTGTACTTTCCCCGGAATATTCAATTAGGCACAGCCCCCGAAGTGCCTTGAAGCGCACGGACTTG # Right flank : GTACCATCAAGTATTTCAATGTGAATCAGTGGATTAACTCAAAAATTAGAAATAAAAAATCCAAGCCAAAATAGCTTGGATTTTTTATTGATTTGTTATTTTTCCTTATCCTATTTCTAACCCTTGGCTGCTGCTCTGTTACAAAACGAATATGTGGAAAACTTTTTCTATTATACCAACGACGGATGGATTTCTTTTGGAAAATTCATCATACTAGCATTTCTAAAATGCCGATTCTCTGGAACGTGGAGTTTGTAGGGCCTGTTGAATGCCTCTTGGGACAGATTAAATCGGCTGGCCAACTTACGGATAACTTCTTTAGAAAGCCCTTTTTTATAATTCAAGATATCTGAAATATATCCTTTGCTAATACCCAAATAATTGACCAAATCCTTGGGTCGCATGTCGTGATCTTTCATGAGCGATTTCAATAGTTCGATAGGATCCATTTCCTTGAAACTATTATTTGTGGTATCGTAATGTTCAATCAATAAAGTAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTCTTTGATTTACTGATATTAGGCACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.22%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCATTCTTTGATTTACTGATATTAGGCACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 25213-25639 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUYS01000011.1 Parapedobacter luteus strain DSM 22899, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 25213 34 82.9 28 C..-.A.C................G...T...... AGAAAGAAATATCGAATCCGCTCTCATA 25275 35 100.0 30 ................................... GTATGAGGTTTGACGAATATGAGAAGAAAA 25340 35 100.0 31 ................................... TAGCCAAGCTTGAAGCAAGGGTTGACCAGCA 25406 35 100.0 31 ................................... CAGTAAATACGTTCTTTATGTTGGATTGAAG 25472 35 100.0 31 ................................... TGACATTGCTTTCTTATCTAAGTTCAACAAG 25538 35 91.4 31 .....................T.G....T...... AATCACACCCCTAGCACAACACATAATTGAG 25604 35 82.9 0 ......................TT..CA.C....A | T [25636] ========== ====== ====== ====== =================================== =============================== ================== 7 35 93.9 30 TTGTATATACCTTTCAAATTGGGATCTGCAACACC # Left flank : TCAGCCCTTTTTCTTGCCGGTTGCCAGAAGAACGAATCGGACGGTATCGTCATGATTTCCGCAATGTAAGCGGCGAAACGCTGAACAATCTATCTGTCAATGGACAGCCTTTAGGCACTCTTTCGAATGGCAAGTCTTCGGGTGTCAGGCGGTTTGACGCATTCGGCACGGATTCCGGATTGCCGGACTGTCAGATCGAAGCAACAGTGGACGACCAGCTATTGGAGGGAGTTTCCACGTTTTTCTGGTGCGCCACGGAGAAATCTGCGTTGAAACCGGGGCGATATACCATTGAAATTACGCTATCTCCCTGGACCTCATATAACGAAGCCGGAGAACTAGTGACAAGCGACTATTTGTATTTACAGTTTAAATAGGTTAATTCCCAAAATCTCACAGCGGGATTTAGACTTGCGCAGTTGGCCTTCCACGACAGCTACCTTTGCCGCCTGAAGCAGTACCTGTTCATTTTCCATTACTTCTGAAAGATGTGCTGCCTG # Right flank : AGCAAGTTAGCGAATAAGCAAATTCGCAATAGAATAAAGTATTCAGTGAGTGTTAACCTGACCTCACCTTGCGGCTGTACAAGCAGCCTCAAAGATTTTAAAGAGCTTACAGGGCGTTTGTTATGTACGAAAGCTTAATCAATACCTAATCCCATAGTGGCTCTTGGCGATTGTCAAACAAATACAGGAGTATAATTTTTGAATCGGTGACTTCGTAGACCAGAGACGTTTGTTTGGAAATGACACACCTTCTATATCTCGGGTTCACAGGTACAGCATGAAACAGATAAGGGTGCGTCTGAATTTTGCCAACCATATCGTCCAATTTTTTCAGAAAACGATTGACATACCGGTCGCCCAATCACGCCCGATTATCGAAACTGTAGCTGATAAGGTTTCTTTGTAGGTTTCGGTATATTCGATTTTCTTAAACACGAATCGGTACTAACGACCCAATATTTCACGATGGGATTTAAACTTGTGCAGTCGCCCTTCAGCAA # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGTATATACCTTTCAAATTGGGATCTGCAACACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //