Array 1 163340-160809 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZNK01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462391, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163339 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163278 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 163217 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 163156 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 163095 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 163034 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 162973 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 162912 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162851 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162790 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 162729 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162668 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162607 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162546 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162485 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162424 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162363 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162302 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162241 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162180 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162119 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162058 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 161997 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 161936 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161875 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161814 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161753 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161692 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161631 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161570 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161509 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161448 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161387 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161326 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161265 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161204 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 161143 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161082 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161021 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160960 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160899 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160838 29 93.1 0 A...........T................ | A [160811] ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181462-179847 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZNK01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462391, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181461 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181400 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181339 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181278 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181217 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181156 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 181095 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 181034 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 180973 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 180912 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 180851 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 180790 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 180729 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 180668 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 180607 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 180546 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180485 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180424 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180363 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180301 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 180240 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180179 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 180118 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 180057 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 179996 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179935 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179874 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //