Array 1 239046-240721 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHKW010000004.1 Escherichia coli strain 41309 contig00004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 239046 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 239107 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 239168 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 239229 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 239290 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 239351 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 239412 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 239473 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 239534 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 239595 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 239656 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 239717 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 239778 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 239839 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 239900 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 239961 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 240022 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 240083 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 240144 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 240205 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 240266 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 240327 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 240388 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 240449 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 240510 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 240571 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 240632 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 240693 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 256223-256739 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHKW010000004.1 Escherichia coli strain 41309 contig00004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 256223 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 256284 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 256345 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 256406 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 256467 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 256528 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 256589 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 256650 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 256711 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //