Array 1 108423-106525 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHEH010000003.1 Salmonella enterica subsp. enterica serovar Infantis strain SI-11 NODE_3_length_250283_cov_6.518393, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108422 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 108361 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 108300 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 108239 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 108177 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 108116 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 108055 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 107994 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 107933 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 107872 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 107811 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 107750 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 107689 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 107628 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 107567 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 107506 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 107445 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 107384 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 107323 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 107262 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 107204 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 107143 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 107082 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 107021 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 106960 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 106899 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 106838 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 106777 29 100.0 11 ............................. CGGCCAGCCAT Deletion [106738] 106737 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 106676 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 106615 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106554 29 93.1 0 A...........T................ | A [106527] ========== ====== ====== ====== ============================= ================================= ================== 32 29 97.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126321-124705 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHEH010000003.1 Salmonella enterica subsp. enterica serovar Infantis strain SI-11 NODE_3_length_250283_cov_6.518393, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 126320 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 126258 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 126197 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 126136 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 126075 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 126014 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 125953 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 125892 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 125831 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 125770 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 125709 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 125648 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 125587 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 125526 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 125465 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 125404 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 125343 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 125282 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 125220 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 125159 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 125098 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 125037 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 124976 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 124915 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 124854 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 124793 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 124732 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //