Array 1 915056-916344 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LR134512.1 Streptococcus agalactiae strain NCTC13949 chromosome 1, complete sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
    915056	    36	 100.0	    31	....................................	CACCAGCAGTTGAACAAACAGCGCCAGCAGT	
    915123	    36	 100.0	    30	....................................	AAATGATTATCTATCACATAAGGTTATTAA 	
    915189	    36	 100.0	    30	....................................	CTGATAATTATGTGATGAAAACTTCTTATA 	
    915255	    36	 100.0	    30	....................................	AAGCTGTTTAGAAGACTTTCTTTTCTTTCC 	
    915321	    36	 100.0	    29	....................................	CGCCAAAATCCCAATGGTCAGACACACGT  	
    915386	    36	 100.0	    30	....................................	AATATAATTGCTCTTGCTCTTCTTCCTCTA 	
    915452	    36	 100.0	    30	....................................	ATTCGCCACTTTCATCATACGATTAGCTTC 	
    915518	    36	 100.0	    30	....................................	TGATTTAGACATAGTAATTTCTTGAAGCAA 	
    915584	    36	 100.0	    30	....................................	CAAATTTGCGATCTCTAAAGACGTTTTGCT 	
    915650	    36	 100.0	    30	....................................	CTTCCGCTATTTAAAGACTACGTATCCAGT 	
    915716	    36	 100.0	    29	....................................	TGCTCAACTACTCGTGCTGTCAAAATCAG  	
    915781	    36	 100.0	    30	....................................	TAGTCACTTGTAACATTTCCATGTTCAAGC 	
    915847	    36	 100.0	    30	....................................	AGGGAGGAGAGAATCAATGCCGAATGCTGA 	
    915913	    36	 100.0	    30	....................................	AGGCGATAACTGTACGATAACCTCAAACCT 	
    915979	    36	 100.0	    30	....................................	TTGTTTCCCATCAAGAGTTGTCATTCCTGT 	
    916045	    36	 100.0	    30	....................................	AAATTCTTTGCTTGATTAATTAATTCGTCT 	
    916111	    36	 100.0	    30	....................................	TACTTGACGAATTGAAGATGACGGAATTTA 	
    916177	    36	 100.0	    30	....................................	TACTTGACGAATTGAAGATGACGGAATTTA 	
    916243	    36	 100.0	    30	....................................	TGGTTATACATTTACTAATCCATCAGCATT 	
    916309	    36	 100.0	     0	....................................	|                              	
==========	======	======	======	====================================	===============================	==================
        20	    36	 100.0	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                               	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.70,-0.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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