Array 1 136312-136879 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDRY010000014.1 Pseudomonas aeruginosa strain M0050 M0050pairedtrimmed_contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 136312 28 100.0 32 ............................ AACGGGTCACCAACTCAGACAGGCGTCGACGA 136372 28 100.0 32 ............................ ATGCGGTATGCACACCTCGCCCCGGACTTCCT 136432 28 100.0 32 ............................ ACCGCGCCGGCCTGCCTCCCGGCACAGGTGAC 136492 28 100.0 32 ............................ GTCAGGGTCGTGCATGACTCCGATGTGGTGGC 136552 28 100.0 32 ............................ CGTCCAGAACGTCACACGCTCGCCGTCGATGT 136612 28 100.0 32 ............................ AACCGGAGCCTTCGGGCCGCGTTGGGATCCAC 136672 28 100.0 32 ............................ TTGACTGCTGGGGCCTGACGCTCATCGCGCGG 136732 28 100.0 32 ............................ GCGACCCTGGCCAGGGCGGCGTCGCGCTCTGC 136792 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 136852 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGTCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTGGTAGGCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 147453-145745 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDRY010000014.1 Pseudomonas aeruginosa strain M0050 M0050pairedtrimmed_contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 147452 28 100.0 32 ............................ TGGAGGGTCTTGTTATAGATCGACAGTTGCAG 147392 28 100.0 32 ............................ TATAACCCCCTGGAGACGGTCTGGCGCATCGA 147332 28 100.0 32 ............................ TTTGCCCGCACCTACAGGGGCTGTGGAACTAT 147272 28 100.0 32 ............................ TGGAGGGTCTTGTTATAGATCGACAGTTGCAG 147212 28 100.0 32 ............................ ATGATGATGTTCAGCGCCTGCGGCACGCCGAA 147152 28 100.0 32 ............................ AGGTAGTGGTCTTCGATGACGTGCCAGAACTC 147092 28 100.0 32 ............................ ACCGTGACCTTGCCAGCCAGCAGGATCTCGCC 147032 28 100.0 32 ............................ TGCTGGGCTTCTACAACCCGCGGGTGTTGCTG 146972 28 100.0 32 ............................ GCGTTCAACGCCGAGGAGAAGCGGATCCGCGC 146912 28 100.0 32 ............................ TCAGAAATGGCTGAGAAAGCTGGAAGTAATTC 146852 28 100.0 32 ............................ AAAGGGAGCAAGAAATGATCGTTACGGCTCAG 146792 28 100.0 32 ............................ CCAGGCGCCGGCTTCTTCCCAGGTGATGCCGG 146732 28 100.0 32 ............................ AGGATCGCGGCGGAATGATGTCTCGCGCCGAC 146672 28 100.0 32 ............................ ATTGGCTGTTGAAGCTCAGGATCGATAGTCAC 146612 28 100.0 32 ............................ AAGGGAAAGTTCCTCTGCGGCGTCCTGGACAA 146552 28 100.0 32 ............................ TTCTTCGGCTCGAACAGCGCAATCCAGACTCC 146492 28 100.0 32 ............................ AGTGCGCCATCGTTCGCCAGGAAAAGCTCGCA 146432 28 100.0 32 ............................ AGCATGAGCGCATCGTCGGGGCGCTGCGGGCG 146372 28 100.0 32 ............................ TGACAGTGGATGCGCTCAGCAATCGACAGATC 146312 28 100.0 32 ............................ TTGCTGTGCTTGAAGAAAAGGGGTTCGTCCAA 146252 28 100.0 32 ............................ GACCCCGCCTCCAGGCCGGAGCCACCTGCCTG 146192 28 100.0 32 ............................ TCGCCGCCCTCCATGGTCTGGCTCAGTTGGCC 146132 28 100.0 32 ............................ TGATAGATTACGGAGCCGCATACGTACTGGCC 146072 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 146012 28 100.0 32 ............................ TGGTTCCGGCTCAAGCAGCGCAAGGAACTGAG 145952 28 100.0 32 ............................ TCGACATGGCGACGGCTCTTGAACGGTTCTAT 145892 28 100.0 32 ............................ AGCAGTTCGAATTCGTCATCCAGTTCTAAGGT 145832 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 145772 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 29 28 99.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGGCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACCTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //