Array 1 366099-367850 **** Predicted by CRISPRDetect 2.4 *** >NZ_CPXY01000001.1 Streptococcus agalactiae strain IT-NI-028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 366099 36 100.0 30 .................................... TACCTTGATGATAAGTTAGGCTTTTTGTCT 366165 36 100.0 30 .................................... AAGCTTATTATCAAGCAAATGAAGTACAAC 366231 36 100.0 30 .................................... AATACCATTTTCCACCCAATCAAATCCAAC 366297 36 100.0 30 .................................... AGTTAAATTCACAATTTTGGTCTTTTTCGT 366363 36 100.0 30 .................................... ATATTCTGAATTACCTTTCTCGACACGCGG 366429 36 100.0 30 .................................... AAAAGAATAAGTATATGTTCTCATCTCAGA 366495 36 100.0 30 .................................... GATATGGTGGACAGGTTCAGCAGGTCATGT 366561 36 100.0 30 .................................... AACATTAGCCTTTTCTAACTCTTCAGCTGT 366627 36 100.0 30 .................................... TATGTCTTCTAACAGTTGCTTCTTGTGCTT 366693 36 100.0 30 .................................... CCGTCAAACAAGAGCGACAGCGAAACAAGC 366759 36 100.0 30 .................................... TTTTATTGGTTTTCTAAGTGCTCGACCATC 366825 36 100.0 30 .................................... AGTTACTTCTGCTTGGGTTTGATAAGGGTC 366891 36 100.0 30 .................................... GAAATGTGGAGTCATTCAGGTTGATGATGG 366957 36 100.0 30 .................................... AAAAAATAAATGACTTTAAAGCACTTGGAG 367023 36 100.0 30 .................................... ACAATCCACAAGACAATGACTTAACTCAAA 367089 36 100.0 30 .................................... AGGACATGTTGGTGTTATTACTGGTATAAA 367155 36 100.0 30 .................................... ACCCTTGTATGTTAAATCCGCAAGATTTTA 367221 36 100.0 30 .................................... TAGTAGCCATTATTATTATGGCTTTTATTT 367287 36 100.0 30 .................................... GGATGATTTCGATTATGCGGCGGTGGTTGA 367353 36 100.0 30 .................................... TCAAACAACATTGGTGATCTTATTGCGGTA 367419 36 100.0 30 .................................... TTATTTAAGACGTGATTTAATGTTAAAACT 367485 36 100.0 30 .................................... CAAACTATCTTGATTATAAGTGGACTGATA 367551 36 100.0 30 .................................... ACCCTTGTATGTTAAATCCGCAAGATTTTA 367617 36 100.0 30 .................................... ACTCTAAATGATAGTTATGAGTTAAATGTT 367683 36 100.0 30 .................................... CAAATTACAGTTTCGACTGATTATGGAAAT 367749 36 100.0 30 .................................... ATATGTTCCACTCTATGAATTTAGGCTCAT 367815 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 27 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //