Array 1 367153-370949 **** Predicted by CRISPRDetect 2.4 *** >NC_002967.9 Treponema denticola ATCC 35405, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 367153 36 100.0 30 .................................... TATAGGAGGTTTCAAAATGGAAAAATCGAA 367219 36 100.0 30 .................................... TATCAAGTTGAGCCTTCTTTAAAGCTCCGC 367285 36 100.0 30 .................................... TATAGGAGTTCCAGACCCAGCACCATCACC 367351 36 100.0 30 .................................... AAAATCGAATGTATCGCAAGATTCAAACCA 367417 36 100.0 30 .................................... TACAAAATCGAAGCAGAAGAAAGGAACTTC 367483 36 100.0 30 .................................... GGTTCCAATCTTTTTGGAATGATTAACAAT 367549 36 100.0 30 .................................... GATTCTGTATTTCAACGCGATGTTGCTAAT 367615 36 100.0 30 .................................... CTAACAAAAGGTGGAATTTTACCGAACAAT 367681 36 100.0 29 .................................... AATTAGTTGTCATTGAAGGTGAAGCCGGA 367746 36 100.0 30 .................................... GCGGAAAAACTATATCGTAATCTTCATAGA 367812 36 100.0 30 .................................... GCTGGAACGCCTATAGCGACGCAAGCTCCT 367878 36 100.0 30 .................................... CGCTGGAACGCCTATAGCGACGCAAGCTCC 367944 36 100.0 30 .................................... GGTTCCAATCTTTTTGGAATGATTAACAAT 368010 36 100.0 30 .................................... CATCTAGAATCCTATAAGGCACGAAGTAAT 368076 36 100.0 30 .................................... CCTTTTTTGTAACTCCTATTTGCAGCTATG 368142 36 100.0 30 .................................... ATTACTTTTCGAAAAAAAGCCGTATTATAG 368208 36 100.0 30 .................................... TCTTTGTATTATAAAGTTAGCAGAGGAAAA 368274 36 100.0 30 .................................... GAATCTACCACCCTCAATACTCCGCCTATT 368340 36 100.0 30 .................................... GTCAACATCACCGCGATCACTACAAACAGC 368406 36 100.0 30 .................................... GAATGAAAAGGACAAGGAAAAAGCTGCCCT 368472 36 100.0 30 .................................... TGATTATTTGGAAGGCATGAGTAAATGCTG 368538 36 100.0 30 .................................... GCAGTAACTCACAAGCCACTTTGAGAGTTG 368604 36 100.0 30 .................................... TTCGACGCTTGTCGAAAAGGCAATCAAGGC 368670 36 100.0 30 .................................... CGAGAAGTTATTATTCTGAACTTCACATCG 368736 36 100.0 30 .................................... CTTTGGTATCAATTAGGATTTCCTAAAGTC 368802 36 100.0 30 .................................... TACAATGATTGCTTGTTGTTCTGATGGAAC 368868 36 100.0 30 .................................... TAGCCTCACCATTATAAAGCAATTCGCATG 368934 36 100.0 30 .................................... TGTTACGTCAAAAAATCCAATAAGTTGAAG 369000 36 100.0 30 .................................... CCTGATAAGGAAGATTGGCGAAAGAAGGTA 369066 36 100.0 30 .................................... TGCTACATCAAATAACCCTACAAGTTGAAG 369132 36 100.0 30 .................................... CCAAAAGTTCACAGTCATCCGAGTAGACGT 369198 36 100.0 30 .................................... CTATCTACTTTTGGGAACCCTAATTGGTAC 369264 36 100.0 30 .................................... TTTCTTCTGTTTGTCCATGTCCAAACCTCC 369330 36 100.0 30 .................................... AACAATGTGTGATTTTTCGGACTTAGTCCC 369396 36 100.0 30 .................................... AAGGGAATAACCTTACCATTCTGTCTTATG 369462 36 100.0 30 .................................... TTCCCAAAAGTTGATGCTGATACGATTGGT 369528 36 100.0 30 .................................... AACAATCAGCCGTGAGGGAATACGCCGCGT 369594 36 100.0 30 .................................... AGGTTAATGATGAAAAAAATAATAACTACT 369660 36 100.0 30 .................................... GGGCATATTATGCAGATATGCAACGAAACG 369726 36 100.0 30 .................................... CTTGGAAAAGAATTTATAAAATGCGAAGTT 369792 36 100.0 30 .................................... GAACATATGCTCGCTCTTTCTCGAGTACTC 369858 36 100.0 30 .................................... AAACTTTGAGGTACTAAATAAAACAAGTCA 369924 36 97.2 30 ...........................G........ ACCTTTCAATAGTAGCATCGGGCAAACCAG 369990 36 97.2 30 ...........................G........ GTCTCTAGTTACTTTACGTATAAACTCTAT 370056 36 94.4 30 ...........A...............G........ GGGCATATTATGCAGATATGCAACGAAACG 370122 36 100.0 30 .................................... CTTGGAAAAGAATTTATAAAATGCGAAGTT 370188 36 100.0 30 .................................... ATGCGATATATCTATGACTTTACCTATTCT 370254 36 100.0 30 .................................... AAACTTTGAGGTACTAAATAAAACAAGTCA 370320 36 100.0 30 .................................... ATATCTTTTGTCGTTAAAGTTAGTAAAAAA 370386 36 100.0 30 .................................... TTTGAAATTCCCCAAATGTCAATTGTTTTC 370452 36 100.0 30 .................................... GAAAATGCAGGCGGTTCCACTGGAGAGGTT 370518 36 100.0 30 .................................... TAATTCAAAAAAAGGTCTTGGTTTGAAAGG 370584 36 100.0 30 .................................... AGCCCGCCCTGCGGAATTGCACGGCCCGTT 370650 36 100.0 30 .................................... ATTGAGCGTCAAGCACCCGGTAAGCCCACC 370716 36 100.0 30 .................................... TTGGTTATTCGACTTTTGATTTGAGCTATC 370782 36 100.0 30 .................................... CTCGCTCGAGCACAACAGGTGGCTGTCCAC 370848 36 100.0 30 .................................... TTTCCAGCTAGAGCATCAAAGTTTATAGGG 370914 35 88.9 0 ..........................C.A.-...G. | A [370940] ========== ====== ====== ====== ==================================== ============================== ================== 58 36 99.6 30 GTTTGAGAGTTGTGTAATTTAAGATGGATCTCAAAC # Left flank : TATTTCCGATGAATATAATTACCTAAAAACATGCACCATAAAAAGCGAAATATTAAAACATATAGACGATGTACTTCTTTCTTTGGATATACCTTTAAAACGGAGTGAAGAACTGGACTTGATCAGCATATTTAAAGCTGTTAATATCTCTTTTGAAACAGAATATACAAATTTACTTGAAAAAATTATAGATTATATAAGCGCTTCTGTGGAATTAAATCAAATAAAATGCTTTATTTTTATAAACCTAAAACAGTTCTTACATTTTAAAGATTTATCCGAGTTATACAAATTTGCCTGCTATATAAAAACAAATCTATTTTTAATCGAGGGGTCATACACATCTACAAAAGAAGATTGTGAAAAATCATATATTATTGATAAGGACCTTTGCGAAATATATTGACAATAAATACTTCTCATGGTAGTATTAAAAAGTAATCATCTTAGACTACCGCTATCAATAGTGTGATAGGCTCTCCACCTACGCCATATCTGAC # Right flank : CACAATGCTTAATGGAACCTCGAAAAATTTCAGCTTTTTGAGGTTCCCATTGATTTTCATCATGTATAAAATATAGAATATTCATTTATAATAGGCTTTCCTTTTTTTTGATTTTTCTTTATAATATAGATATGGCTAAATTTAAACGGAAAACAAAAGAAGAACGGACGTATGAGATAATAGAAGCTGCAAAAAAGGTGTTTTTGAAAAAGGGCTTTCATAATACTACGATGGAAGATATTGTTGCCGCTACAAGCCTTTCAAAAGGAGGGGTTTATCAGTACTTTAAAAGTACGAAGGCTATAATGTTTGCCATAATGCAGGAAGGAAACTATTTTCGATACAGACGCAATGAAGAAATCTTTAGTTCTGCAAAAAAAATTGATGACCCTTACGAAATTGTAACCCAAGCCTTAGAAGCAAAACTATTTGATAATGTTCCCGAAAAACGGCTTTATCTAATGTTTCTTGCCGAAATTCTATATGACAAAGAATATGAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTTGTGTAATTTAAGATGGATCTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTGAGAGTTGTGTAATTTAAGATGGATCTCAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //