Array 1 2831576-2835567 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHSPD010000001.1 Roseovarius sp. LXJ103 LXJ103_Chr_part1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2831576 36 94.4 30 .GG................................. TTGTTTGCGTTAAGGCCAATCACACTCATT 2831642 36 100.0 30 .................................... ACCGGAATGACGCGAAGCGTTCACTGGTCA 2831708 36 100.0 30 .................................... GGTGTCTCAGCGCATCGCGGAGGTTGATAC 2831774 36 100.0 30 .................................... GACCACCCCGCCGATCCCAGTGATGAGCTC 2831840 36 100.0 30 .................................... ACGCGACATCGCGGGCCAATATTCTGAATG 2831906 36 100.0 30 .................................... GTTCTTCATCTACACGGGACAATGCGGTTT 2831972 36 100.0 30 .................................... CTCAGCGCCCGTGCGAAACAGCGCATCAGT 2832038 36 100.0 30 .................................... AGATGCAAATGCAGCTCGCGAGTGTCACGG 2832104 36 100.0 30 .................................... CTTGACGGGCTGCACGGCCCAGCCGGTCCA 2832170 36 100.0 30 .................................... AGATTGAACCGCAGACCGTTGTGAAGATCA 2832236 36 100.0 30 .................................... TTGATCTTTGTCGTGGATGAAATCGCTTCA 2832302 36 100.0 29 .................................... TTGAAAAGCTGGTCCCCGCGCACCTGCCC 2832367 36 100.0 30 .................................... GACGGTCCCAGAGGTCGCGGTAGAGCCTTT 2832433 36 100.0 30 .................................... GACGTGGTAATCAATGCCACCGCCCTCGTC 2832499 36 100.0 30 .................................... AGCGTTTTATAACCGGCGTCGGTGACTTCA 2832565 36 100.0 29 .................................... GGTCATGCCCAGCGGAAGCTGCACCGATG 2832630 36 100.0 30 .................................... CGGCGGCGGTGTGATCAGGTGTTTCATGAG 2832696 36 100.0 30 .................................... TTATTCATGCGGTCGCCAGCGGTCCAGCCA 2832762 36 100.0 30 .................................... CTGGCGAGGCTCACATGATCTACCGCACCA 2832828 36 100.0 30 .................................... CCACGGGAGCAGCTCCTCGGGGCACGTGTC 2832894 36 100.0 30 .................................... GCCACCCGCAAAGTGACATTCACGGCCGGC 2832960 36 100.0 30 .................................... ATACGCCGAGGAGGATGCGCAGTTTAGCGC 2833026 36 100.0 29 .................................... GGTCGAGCCTCAAACCGTTGTGAAGATCG 2833091 36 100.0 30 .................................... CGCCTACCAAGAGGGCCGTATGAGCGATAC 2833157 36 100.0 31 .................................... TTCGCAGATGATGAGGAGGATGCCTAATGCA 2833224 36 100.0 30 .................................... CGCAAAGCGCGGCTGATGGAGCTGGAGCCA 2833290 36 100.0 30 .................................... GACACCCGCAAAGTGACATTCACGGCCTGC 2833356 36 100.0 30 .................................... TGCAGTCCAGCCATCATGCTACTCCGTGTG 2833422 36 100.0 31 .................................... TCGAACCGATCCGCAGCGGCCCTGGCAAAAT 2833489 36 100.0 30 .................................... CGGCAATGATCGCGGCGGTGCGCCGCTTGC 2833555 36 100.0 30 .................................... GAAGGCCCCGTGCGGCGGAAAGATCGCGCT 2833621 36 100.0 30 .................................... TAAATTATGGCGCGCAGGGCGCAGGCGATC 2833687 36 100.0 30 .................................... CACGAGCCTGTAGACATAGCTGCGCCCCTT 2833753 36 100.0 30 .................................... TGGCGCTTCACACTGATCGCTGGACGGGGG 2833819 36 100.0 30 .................................... CGACCACCCTCCTCGTGGGACTTGCCCTCA 2833885 36 100.0 30 .................................... ACCATGCAACTGAAAGACGCGAAACCCGGT 2833951 36 100.0 30 .................................... GCGCGGGGTGCAGGAGCTCGAGGCTCACCT 2834017 36 100.0 30 .................................... CCGCGAGGTTGTCTCAAGAGCAACCGCCCC 2834083 36 100.0 30 .................................... GGCGGCTGATAGCATCCGCCAGTGGGCGCA 2834149 36 100.0 30 .................................... ACATGAAGGCGACCGTCTATGCTGACGGCA 2834215 36 100.0 30 .................................... CACGCCCCTGCGCCTCCAGTGCCTCGCGCA 2834281 36 100.0 30 .................................... GGTAAAGGCCGGTGATGCAGCGGCATCGCT 2834347 36 100.0 30 .................................... AGTGATCGCACTGGATCAGGGCACCTATCA 2834413 36 100.0 29 .................................... CTGGCGTGTAATATTCAGCAAGGCGCTTG 2834478 36 100.0 29 .................................... CCCATAATCTCCGATTCTTCGGTCTTGCC 2834543 36 100.0 30 .................................... AGTTGTCTAATGGCAAAACCGACTAAACCT 2834609 36 100.0 30 .................................... CGCCGTGAAACCATCATCTTCGGCACTGGC 2834675 36 100.0 30 .................................... AAGGCATTTGTCCCGGCCACGTTGCAGACC 2834741 36 100.0 29 .................................... TGGATGAAGAACGGCAGATCCGTCGATGA 2834806 36 100.0 30 .................................... CCGAAATGCAGCCTTTACATGTGCGCGCGC 2834872 36 100.0 30 .................................... AAGTGCATCCCTTTCCCGTTGCAGTGCCAG 2834938 36 100.0 30 .................................... GCGCAAAACGGTGATGCTGTCGGGTCGGAA 2835004 36 100.0 30 .................................... CGAATCACCAGCGAATCGGGGGTGTTTCTA 2835070 36 100.0 30 .................................... GGCGCCTTGGGAAAACTGCACGAACTTATA 2835136 36 100.0 30 .................................... TTTGATCGGGCGCGCAACGATATGCAGACG 2835202 36 100.0 30 .................................... TTTTCGTTTGTGCGGTCCTTCTATGTGGTT 2835268 36 100.0 30 .................................... TGTGACGGTTGACCAGTTTCTTGGCGAGGC 2835334 36 100.0 30 .................................... GCAAAAAATCCAGGCAAGTCAGCTCATCAA 2835400 36 100.0 30 .................................... GCCTCTAACGCCCGCACCGGCGGCTGGTCA 2835466 36 100.0 30 .................................... CAATGGTCTCCGCATGGCTCATTTCTGGAA 2835532 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 61 36 99.9 30 GTTGCGGCTGGACCGCGGATTTTGAACAGCTACAAT # Left flank : GGAACCAGAGCCAGCTACTATGTCTTCTCAGGACCTCGGCGGCGCGCGGGCTCTTGCGGGTGGAAAGGGTACCCCTTGCCCGGCAACCGCTGCTTGCCGCCATGAAAGTTGCACCAGCACCCCTTTCGTTTCAGACAGTGCGGCGGCCAGTTCCTTCAAAGTAATGTCAGGTTCAGCACGCAAGATGACGAGAAAGACGTCGCGATGCGGGGCAAGCCTGCCAAAACGTCCCAGCGACCTGCCTTGTCGTTTTGCAGCGACCAAGCCCCGCGTCCGATACTCCGCCGCAAACCGCACAGCCGTAGCAGGACTGGCACAAAACACCCGTCCGGCAGTGCGCGCCGAGTGCCCTTTCGCCACATAATCACAAATCCGTTGCCGAAGGTCCAAAGAATAAGGCTTGCCCATGATCCACCTTCCAAAGGAAGTGGAGCAGAAAATGCCACATTGTGAATCCCCGTTCGCCTCACATCAAACGCAAAACGCTTTAGAAGACGGAC # Right flank : TAGATCGCCCGCTATCTTCTTGGAGTTAAAAGAAAATAGCGGGGGTCTATTGTGGTTAATCCAAGCGAATCGCATCAAAACATTACCAGTTGTTCCGGATTCTTTCGGGCCTTACGTCGACCCTGATCCGAGAAGTGAACGATATCACGATATTGTCGATCCGTAAAATTCAGAATCTGCACGTCCCCCGAATCGGGTAAATGGCGTGAAATCCGGTTCACACGGGTCTGAAACGCCTCTTTGCCGTTTACGAAACGGGCATAGACGGAAAACTGGCTGCGCTCGAAGCCCTCATCCAGCAAAAAATTACGGAATTTTCCGGCGGCCTTGCGCTGAGGTTTGGTGTCGGTCGGAAGGTCGAACATCACAAGAATCCACATCAGACGATACCCCGATAAAACTTTGATTTCATGGTTCATGCCCCCAACCCCGCAAGTGTCAGTGGGCCGGGCGTGTTTGGCAGGGCCAGCGCAAGCCTGCCCTCCTCGAAACTTTGGCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTGGACCGCGGATTTTGAACAGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGCGGCTGGACCGCGAATTTTGAACAGCTACAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.20,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //