Array 1 9549-8561 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKPQ010000036.1 Providencia rettgeri strain 2020EL-00008 NODE_36_length_40332_cov_27.594130, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 9548 28 100.0 32 ............................ ACAAAAGCGTGAAGAGATTTTAAATACAATAC 9488 28 100.0 32 ............................ GTTATCAGAGCCCGTTGTGAGCGCGTTCCTCG 9428 28 100.0 32 ............................ TCAACTAAATGAAAGACTTTAGCCAATGTTTT 9368 28 100.0 32 ............................ ATTGTGATCAGTGAGCAACGTACCGGGCAATA 9308 28 100.0 32 ............................ GCCACCATCGCCCACTGCCATGTGCGTTAACT 9248 28 92.9 32 ..........G..T.............. AATCGAAGCCGTAGTGACTCAATATTATATTC 9188 28 100.0 32 ............................ TGATTGAATGCTTGTGGCAAATCACACATATC 9128 28 100.0 32 ............................ AGCTCTGTTCCTCGATGCCGCGGATTATTTTC 9068 28 100.0 32 ............................ AGTGAAAAAAATGTGGGCAATACTGAGCACCT 9008 28 100.0 32 ............................ GCTCAGATTAAAAATAAAATAAGACTTCGCTT 8948 28 100.0 32 ............................ AGACCAAACGACTCAACAGCTACGCACCACAA 8888 28 100.0 32 ............................ ACAACAGTGCTTGAATTGTAGCCGGGGCCATA 8828 28 100.0 32 ............................ TCCATTAAGTCATGTTCCCCTTTTTGCAAGCT 8768 28 100.0 32 ............................ ATAAATAACTTGGCTCCGAGTGTTAAGTTTAG 8708 28 96.4 32 ............G............... TCATGCTGATGAATGGGATCAGGATGTTCTCT 8648 28 92.9 32 ..........G..T.............. TCTTCATTGCATCCCTGCGAGTTAAATTAATC 8588 28 89.3 0 ..........G...........A.A... | ========== ====== ====== ====== ============================ ================================ ================== 17 28 98.3 32 GTTCACTGCCATACAGGCAGCTTAGAAA # Left flank : GACCAAATTTCTAATATTGAAGCGAAACAAGGCTTACAACTGCAAGAAATTGATAAATTAGATTTCTTGGCAGATACCCGTTCGATTCAAAATGCAGCTCGTAAAAGTGAGCTGCTTGAGACCAACTGGACGGGTACTACGACGGATTACTATAAAGAAAAGGCGATGTTTGATGCATCCCAAAGTATTTTTAAAGATTTAAACAGTATGTCACTTTTTGGTAACCGTTAATAAATTAAAGGTTTAATTTTACTCACCGCGCTTTGGAGTGATTCGAGCGCGGTTTTTTTTATTTTGAGGTACCTTTATTTACGCACTATTTTTGTTTGTGCATATTGCATAAATCCCGATTTGTTTTACCCTAGTTTGACCTTTATTTTTTGCTATTTAAAAAATTAATTATTAAACAATAAGTTAGGATACCCTCCCAAAACAAAGGTATTTTGGCGTTTATAAAGCTAGTACATTGTTTTCCTTTGTTTTATCTTATTTAACTAATA # Right flank : CAGCCAAGGAGTTATTTTTACTGGATATTCTGTGAAACCCCTCGCAAATTTGGCTTTAGTGATAATTTAAGGCTTGTTTCATTGGTTAAAGCTTATTCTAATAAGATTGATTCAAAAAACTTATTATTTAAGGAAGAATTCAACTGCTTATGGATGACTTTTCACCTAGTGACTTAAAAACCATCTTACATTCCAAGCGCGCTAACATGTATTACTTAGAGCATTGTCGAGTGATGCAAAAAGATGGTCGAGTGTTGTATTTCACAGAGGCAAAAAATGAAAACCTCTATTTCAATATCCCTATTGCAAATACAACAGTTTTGTTACTTGGTACAGGAACATCAATTACCCAAGCCGCAATGAGAATGTTATCTCAAGCGGGGGTGCTAGTTGGGTTTTGTGGGGGTGGTGGTACACCTCTGTATATGTCTACAGAAGTAGAATGGATGACACCACAAGGCGAATATCGGCCAACGGAATATTTACAAAGCTGGTTATCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 55-744 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKPQ010000098.1 Providencia rettgeri strain 2020EL-00008 NODE_98_length_17374_cov_24.155447, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 55 28 100.0 32 ............................ ACTATTTTAAAGGAGCTGCTATGAAAGCACAA 115 28 100.0 32 ............................ TGCATGTTGCGCTTCCTTAAACACGTCGATTA 175 28 100.0 32 ............................ CCCCGCGCTGATCAGCCGTGAGCGGAGCGAAC 235 28 100.0 32 ............................ AGCCCAAAGAGGGTTAACCAAACCACTACTGG 295 28 100.0 32 ............................ ATTTATCGACTTTGCTAAACTATGCAATTACC 355 28 100.0 32 ............................ AGTGCTATACAACAAAACTGGCTCGCCTATTT 415 28 100.0 33 ............................ GCTTGCACTGCCTGCGCTATTTTTGGCTTGTTC 476 28 100.0 32 ............................ GCTATATCCTTGTAGTACTGGAACTTTATTAC 536 28 100.0 32 ............................ AACAACAGATAAAATAGAATCTGTGATCGGTT 596 28 100.0 32 ............................ TGTCGAAATTCAAAACTGTCAAAAGTCTTATA 656 28 96.4 32 ......................C..... AGTGGATTAAAGAGCTTAATTTATCAACTTAA 716 28 89.3 0 ...T......A.........T....... | G [742] ========== ====== ====== ====== ============================ ================================= ================== 12 28 98.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TAATAAATACCCTTAACTAATTGTTATAGCATGATTATTATATTAAATTGCATAG # Right flank : AGAATATTAAAGAATAGATATCTAGATTCTCTAATTGGTGAAAAAAATAAATGTGAGTTAAAGCTAGTTTTTTGTGAAATAAGTAGTTATACCATCTTTATCTTAAGTTAAATTTAATATCAAATATAATACGTATCTATCATTCGATAGCTTAGAAATGAAATATAGAACGGGTATTATATTACTGCCACAAAGGCAGATTTTGATTAGAGATAAATACCTGAAAAATAGATCGGGTAACCAGATAATAATAGGGATAACTAGGAGGGGTTATGAGCTTTGAGTTTGAAATAAATTGTTATTGGTTTTCAATCATCATTCGATTTTATAAATGATTTTATAAACCTGCATTTAATTAAAAAAATACAAACATCACGACTCAAATAAACAAATTAAACATCAATGACAATTGCTCAAAAGCTTGGTGGATAAGGCGTTCAGTATATCGGGGAAGGATGGAGATAATTACCCCTAACATACTGATACCTATAGTTAAGGTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //