Array 1 159-662 **** Predicted by CRISPRDetect 2.4 *** >NZ_WOAA01000011.1 Paenibacillus campinasensis strain 3CS1 NODE_11_length_142911_cov_38.0426, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 159 32 100.0 38 ................................ CGTTGGATATCCCCCGTTCCACGGCACCTTAAATGCTG 229 32 100.0 35 ................................ TATCACAATGTACTTTGCTCGGCATGGATCTGGCA 296 32 100.0 36 ................................ ATTTTTCTTCGTGGGGGATAACCCACGAAAAACGTT 364 32 100.0 33 ................................ AGACCAAAGAACTGTCAGTTTAGTCTGACGGTA 429 32 100.0 35 ................................ TGCTTTCCTACTCAATTTAATCCCTCCTGTAAATC 496 32 100.0 36 ................................ CGCTGCGCGCTGTAGCGGAGACCCGGGGCGATCTTG 564 32 96.9 35 ...........................T.... CATATAAGCCTCTATTCCGCTTGCTACTCGAAAGA 631 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 8 32 99.6 36 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : GCTTAACCTTACCGCTTCTTCTTTGAATGTTTTGTCGTACCGATTCATTCTCGCTCATCCCCTCATTAGCTTTCATTTTATTTCATACGAGGGTGTTTTTCGACTGCATTTTTATCGTAGCACTCCAGTCATCTGGCTGCTTTTTATTATTCGCATCTG # Right flank : TAGGCGCCCAGGCAAGCTGCCCACTCGCTTTACGGCGTACTCCATGTGAGTGCATTGAAATTGTGCTCCGGTCCCGAGGCTAACAGGCAATCAAATAAACATGTGTGAATGAAGAATGACGCGAGTTTTGCGTTGTTCTTTTTTTCATGCTTAGTGCGGCTCTAAGAATGCCATGTCTTTTTTGGTACAATAGAATGCAAGTTATTGGGCAGGGGAGGAGAGAGTATGATTTATTTAAGGAGTTTTAAGATTTCCAGTTATACAGATCGAAATCCCAACATATATCCGGATCATGTGTTTAGGCATATCGCTGGCGAGGTGCTCTGGTTTGATCGAATTACGGTGCTGTACGGCAATAATGGCAGCGGCAAATCGACTTTGCTCAATGTCATAGCCAATAAGTTGAATATTAAGGGTGCTGAGAAGATGACCAGTCATGGGCACAGTATCTATGTTCAGCGGTTTCTTGAGATGAGCAGCTGCCAGTTCGGGCAGGATGA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 8791-9968 **** Predicted by CRISPRDetect 2.4 *** >NZ_WOAA01000011.1 Paenibacillus campinasensis strain 3CS1 NODE_11_length_142911_cov_38.0426, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 8791 32 100.0 35 ................................ GGCAATTTGCGGCTTGTATTTTTTCCCGGGTCGAG 8858 32 100.0 34 ................................ CGAAGTGTCTATTGCGCCATGCCAATTTGTTGCG 8924 32 100.0 36 ................................ GCATCTTCGCACTGATCGGCGGCAGCGTAAGCCAAA 8992 32 100.0 39 ................................ ATGCGTTAAATAGATGTTGCCTTGATATGCTCTTACAGA 9063 32 100.0 34 ................................ AAGGTAGGACCCCCATCATCGTTTGAAGATCAAA 9129 32 100.0 36 ................................ TTCCACCATCCGAAGCAGGAGCCGTCTCCCTCGTGC 9197 32 100.0 34 ................................ AGTTGACGGTTACGCAACTGGTTACGCTCCTCGC 9263 32 100.0 36 ................................ AACGCCCGTATTATCTACTTGCTCGGATGATTGTTG 9331 32 100.0 36 ................................ CGAATGATCTCCTTTTTGATACTTGGTTAAATTTAC 9399 32 100.0 34 ................................ ATTACGTCGTCTCCTTTAACGCGAAAATAACCTC 9465 32 100.0 38 ................................ GTCCATCGTCCACCAATCCCAAAATACTAATTGGAGGT 9535 32 100.0 35 ................................ ACCCATATCAGGAGGATGAATCCCATATGACAACT 9602 32 100.0 35 ................................ ACCCATATCAGGAGGATGAATCCCATATGACAACT 9669 32 100.0 38 ................................ CTGCCGATGCGCCTGGAACCCTACCAGGAGCGCCCGCT 9739 32 100.0 33 ................................ AATAATGGCGAAATCGTAGGAGCCTTTGCGGTG 9804 32 100.0 36 ................................ GCAGCTTTCACCCTCGTATACCTACTCCCAGATAAC 9872 32 96.9 35 ...............................A GATATATCCGTATTGTGTCCAGTGTGCCAGTGCTT 9939 30 81.2 0 .A....A....--.........CA........ | ========== ====== ====== ====== ================================ ======================================= ================== 18 32 98.8 36 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : GGCGGTCAAATTACGACAGAACAAATGCACAAGGCTGTTCGGGATTTCGGTGTTGAACTGCGCGGTGCGGGGACAGACGAGAGCCCTTACGTATATCGAAAGCTTCAGGATGTGCTGGATGCACATGCAGAGACCATCGAAGTCCTGCATGTATTGAAGCCAATCGGTGTGTGCATGGCCGGAGCGGATGAATTCGATCCTTATAAGGATTAAGGGCATGTGGCGAGAAAGCAAACCGGGAAATTCATTATGGATGTCATTGATGTAAAATAAAATGAAATCGAATGAGATTACAGCAGTTTATACCATAATACAGATGAACGGCAGGCCTGGTGCGAACCCCAAGCGAACATGAAATCCCTGGGAGGTTCGCACCTCGCGTCCCACAAGGACTCCCGGCGATTTAAGTGGAAAATATGCTCATTTTATAGTACTTTAAAAAGAGGTTCGCACTATTGCTCTTAAGAAGCGTTACTGCATAAGGGGTTATAAGGTGGGCT # Right flank : TCCCACTAGTGTATCCGCAGAGATAACCATGATGCGTGCGGATCCCCTATGAATGCATGGATTCATACTCCGCTCCTTCCATCTCCTGAGGCGCACACCATTACAACAATCGGCTCCTGCCCAGGGCCGATTGATTTTTCTAATGTCCCTCCGCTCCAGAGCAAGCGGAGGGCTTTTTGTCTTCCCGAATTCATACACTTCCACTTCTCATCTGTTAATGGAATTCCCCCGCCACCAAAATTGTTTCATTATGCAACAATCATCTATAATCCATTGATCGGTTTTTGCCGATAAAACTCAAGTGAGTAGCAAAAAACAACAAATGGATTTCGGAGGGGTTAGATTGCGCAACAAGAAATGGACAAAATTTTCTTTTAAGGAATGGAACCGATACGGCAACAAGCTCATACTGTCTTTTTTAGTCATTCTGTTAGTGCCAAGCTCGGTGATCGCCTTCACTACCTACACAAGCGTTAAAGGAATGATAGACACACGCTTGC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 16158-18484 **** Predicted by CRISPRDetect 2.4 *** >NZ_WOAA01000011.1 Paenibacillus campinasensis strain 3CS1 NODE_11_length_142911_cov_38.0426, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 16158 32 100.0 36 ................................ TCGTATATCCTGCATTACTCGACGATGCTCCTTTCC 16226 32 100.0 36 ................................ TTTGGTCATTTGCAACAACAATTGAATTGAGTTAGC 16294 32 100.0 34 ................................ TCTTCATCGGTCCAAGTATCGCCGTAGAGCTCTT 16360 32 100.0 36 ................................ CAATTTAATCCCAAAAGTCACATTTTTGCACACAAA 16428 32 100.0 38 ................................ CTCATTGGTTCGGGGTGACGATGATTAATGACCTTTAC 16498 32 100.0 35 ................................ ACCGAAGAAACCGGGATCCGGGTACAGAAACAGGA 16565 32 100.0 34 ................................ TGAAAAATATTAAATGCAACGAAGTATAGCATCA 16631 32 100.0 36 ................................ GTATCTCAATTACCGCCAGAACAACAGGCAGAGTAT 16699 32 100.0 38 ................................ CAGTCTCCTGTAAACACACCCGCGATAAAATCAACAAT 16769 32 100.0 36 ................................ CTTAAGCCGATAACTCAGAGAGCGCTCAAGTTCTTA 16837 32 100.0 35 ................................ AACCGAATTTGTGGAGGAAGGCCAGACGGATATAT 16904 32 100.0 34 ................................ GAACATCAATCCAACAACGTGCGTGACGCCTTCG 16970 32 100.0 35 ................................ ATTGGGAGAAACGGTGGGAAACCTGAATCAGCCGG 17037 32 100.0 36 ................................ TAAAGCCGTGTTTAACTCGGATGAACTAAGTTTCTA 17105 32 100.0 33 ................................ AGGGCACCATCATGATCGACGACGTATACACGT 17170 32 100.0 40 ................................ TAGGATCGTTTAAATCTTGGCCTGATATGTTTTGCGCAAA 17242 32 100.0 35 ................................ CCATCAGTGACGGATATTGATCCGGGATTTATAGG 17309 32 100.0 35 ................................ ACCTCCGCCTCAAAACTACCGTAATTCGTAACAAC 17376 32 100.0 36 ................................ AGATCGGCAATGATTTGGTCTTGATCTTCCAGGCTT 17444 32 100.0 35 ................................ ATGCTTATTGTCGGCGGTTTTATAATGCTCGCGCA 17511 32 100.0 36 ................................ TTGGTGTGGTCAGAAACACCGGACGTACCGAAGATG 17579 32 100.0 36 ................................ GATAACCGTCCAATTATTACTAAAGAAATTAACCAC 17647 32 100.0 36 ................................ TTCCAGCGCCCTGTTATTTTGTCTAGTGCCGTTCCA 17715 32 100.0 34 ................................ TGAAGATCCTTCGACCGGAACCAATAAGGTGACA 17781 32 100.0 33 ................................ TGCATCATGTCTGGTGGTGAACCCGTTATCATA 17846 32 100.0 38 ................................ TTGTGAGTTTCAGACGAAAACCAAGCATCCTTAAACAT 17916 32 100.0 35 ................................ TGTTCGCTCATTGTTATCTGCCCTCCAATATACGA 17983 32 100.0 36 ................................ TATTTCACAAAGAAGGGATGATCATGTTGGATATCA 18051 32 100.0 36 ................................ CGTCCATACCATATAAGAAAGCAATCAGCACTTCCT 18119 32 100.0 38 ................................ ATACCCGTATTGACATGGAGGCAACTGGCCGAGACATG 18189 32 100.0 35 ................................ CGACAAGAGTATCACAATGAGATATATCGGAATGG 18256 32 96.9 35 ..........G..................... GTTCCATTCTTTCCATCTCTGTAATCCTGTCTCTG 18323 32 96.9 34 ..........G..................... TCCTGGAGGTGGGAAGTGGAGCGCTGGCACTATT 18389 32 93.8 33 ............T...........C....... ATGATGTACAAGTACAACCAGGGTCAGGACCCT 18454 31 78.1 0 .............C.......ACA.G..-C.. | ========== ====== ====== ====== ================================ ======================================== ================== 35 32 99.0 36 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : TGTGGAATCGAGATCCGGAGGACTGGCTGACACGTGATCAGGACAAAATTGTGGATTACATCAAGCAGATGAAAGCCTCGGGCTCGATCGTTATTCTGCATGAGTCTCAAGCAGTGGTAGATTCGCTTCCGGAAATTATCACCTACCTCAAGAATCAGAATTTGAGTATTGTCGGGTTGCGATAAACGGACATTTCATAACAAGGCGATAGACTGGCGGATGCAAGATTCGTAGCCAGGAACAACATCCGATGGTTGAATAAGATGGTTATCCTTTTGGCGGTGGAAACACGGTTTAAAGAGGATAACCTTTTTTAGTTCAAGGGGGTCCTGGTGCGAACCCCAAGCGAACATAAAATCCCAGGGAGGTTCGCACCCCGCGTCAGACAAGGGATAACGCGATTTGCATGGTAAATTCAGGGTGTTTATAGTAATCTAGAAATGAGGTTCGCACTTTTGACCCGCCAAACCCTTGAATCACAAGGCCTTGTCAGGCGGGCT # Right flank : TGGATTTAACCGATCTATCCCATTTCTGTTAGATCACCTCATCCCTCTCCATCGCTACTTATCTCCCACACGCGACCGTTTCCTTTGACCCTAAAGCTCTCCTAATCCCAGGAGGGCTTTTTTCATTTGTTAACAAATCCCCGCTGTTTCCTCAGAATCTATTCATAAAATTAACCAACTCCTAAAATGCGGATAACATCCAGATTACAATTGAAAATTACAGTAGAGGTATAGACGTCTAGACAATTTCGATGAAAGGAGAATAACTTGAACAGGTTGCAGGCCAGTCCCAAATACGGACTACTGATTACAGTTCTCATCTGGACCTTGTTTCCGATCTACTGGATGGTGATCGTGGCCACACAGACCGATTTGTTTGCGGATGTGTCGCTATTCCCCCGTTCTGTTACGTGGGAGCATGTGATCAGTGTTTTTACAGAAGAAAATTACTTAGGGGCGTTAATCAACAGCTTTACCGTTACAGCCATCTCCTTGCTGAT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 36270-37521 **** Predicted by CRISPRDetect 2.4 *** >NZ_WOAA01000033.1 Paenibacillus campinasensis strain 3CS1 NODE_33_length_37656_cov_38.736, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 36270 32 100.0 34 ................................ AAAACCCTGTACAAGATCGTTAAGTGACAAGTTA 36336 32 100.0 34 ................................ AGTTGGGGAATCTGATGTGAATACAAGATTTATT 36402 32 100.0 35 ................................ AAATCTTCTGTATCATCGCTCGTTTCCAACAAATC 36469 32 100.0 36 ................................ TGTATCTCTCGTATAAGACAGGCCCCCTGAAACGAC 36537 32 100.0 34 ................................ AAACGAATAGCAGCCAGTTATCCAAACTGGAAGG 36603 32 100.0 36 ................................ ACCGCGATATCAAAGCTGGTAATCATACGCATTATT 36671 32 100.0 35 ................................ CTAACGGTCGCAGAAGTGTTCGGAAGGGAACACAA 36738 32 100.0 39 ................................ GTAGTCAACAGCGAAACTGTCGACGTGGCTTTCGGTGTC 36809 32 100.0 39 ................................ CGACTAGAATGTTTGAGCCGTGGCAAGCAGGTGTCGGAG 36880 32 100.0 37 ................................ GAGGGCATTCCTGCGCGGTATGTGACAGGTTTTGCCC 36949 32 100.0 35 ................................ CATATCGCGATCGTCTGTTGAAAGAAATGGAGGAC 37016 32 100.0 36 ................................ AACCCGAATGCGAAGAATCCTAAGTCTTCCGCAGCC 37084 32 100.0 37 ................................ TTCCAGCATCCAAGAAACCCGTACTGCAACCAATCCG 37153 32 100.0 36 ................................ CGGCGGCGCTTGCGGTAGCTCCGTCCGCGTATCCGG 37221 32 100.0 35 ................................ AACTCTGATAGTAAGCTTGATTCAGGAACACACCA 37288 32 100.0 36 ................................ ACTCTGCCTTAGAGTCGATATTGCCAATGTTTGAGG 37356 32 100.0 36 ................................ TCTTTTCCGTCATCTTGTAGTATCTGTTGACCGGAG 37424 32 100.0 34 ................................ AAAATCCGTACACGCCAAGTGGCCCAACCTTTAA 37490 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 19 32 100.0 36 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : ATGCGGATACAAAGACAGTGCTGCTGCGGGAGTAGCAGCACTGAAGTGGACCCTGGGCGGCCTTCGAACGAGACGTTCGGGGGCCGCTGTTTTGTATATAAATGATTCGCCTTGAAAATCACTGATGTAGCTGTCAGTGATTTTTCTATATGTTTGTAATAGAAGCCAATAAAGGTAATAGAGGGAGGGTCTTCTTGCAGATGATCTTTGTCCAGCTACCCCTGGGCCGGTAAGGGATTGCGAGATTAGCAGTGCCGGAGCGCAGTGAAGGGGTGCGGTGGGCTTGTGACGGACTTCCATGGAAACAGGAGGATCAAATAAAAGGGCCTTGAGTGCGAACCCCAAGCGCACATAAAATCTCTGGGAGGTTCGCACCTGGCGTCCTGCAAGGGTTTTCGGCGATTTGAGTGGAAAATATGCTCAATTTATAGTACTTTAAAAAGAGGTTCGCACTTTGGGCTTTCTGAAGCCTTGCTGCATAAGGCTGTATAAGGCGGGCT # Right flank : TAGCTGTCTGGAGTTGTCAAAAAAAGTGCAGTTTGAAAACACACTCATGAGAACCCCATGATTAAGCTGCCTGTGACAGCATTCTTTCGCGATAAATAGCTGGGGGCCAGCCCCCTGGATTAGAGGTGTACACCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3326-2819 **** Predicted by CRISPRDetect 2.4 *** >NZ_WOAA01000046.1 Paenibacillus campinasensis strain 3CS1 NODE_46_length_13423_cov_36.4797, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 3325 32 100.0 34 ................................ GCTTGGGGCAATTTCAACCAGTTTCCCGAGATAC 3259 32 100.0 34 ................................ AAGTGCCGCCCTGTACTCGACAAAATTAATATTC 3193 32 100.0 39 ................................ GTGGCGGATTGGCGTATTTGTGTTAAGAAGTAATACCCC 3122 32 100.0 36 ................................ TAAAATTATATTTCAAAAAAATAAAACCCTTATCTA 3054 32 100.0 35 ................................ TATCATCGTTACCCCGAACTGCAGCTGAAGATCGT 2987 32 93.8 38 ...............A..A............. GTTTAGGTCCGAAAGGATCTGCGCAATCTCTGTGAGCC 2917 32 90.6 35 .............TAA................ TGATAGTATTTGGGTCAAGTGGCATCCGCATTAGT 2850 32 78.1 0 ..T.........GTAA....T......A.... | ========== ====== ====== ====== ================================ ======================================= ================== 8 32 95.3 36 GTCGCACTCTATACGGGTGCGTGGATTGAAAT # Left flank : CTCCTGCATAAACAGCTTCACTAACCGGTCAATCCATTGCTCCTTAATGGTGATCGTCGGTGCTAGAATTAATGTTGGCTTATTCAGCCGCCTTATGATTTCGAGTCCAACCACGGTTTTGCCTGATCCCGGAGGTGCCACAAGATGAAAATGACGATTGCTCAAATAGCGGTCAAGCTGGTCCAGCACCTTCTGCTGATAGCTTCTCCAGGGATAGATAAAAGCGAGATTTGCTGGGAATGATTTCATAATGGCATCCTTTCTATGGTGGGTATGCTGTTTACATTTTACCAGAATGCAGCCTATCATGTTGAGGAATACCAGCTTCCCTGGTGCGAACCCCAAGCGCACATGAAATCCCTGGGAGGTTCGCACCCCGCGTCCCGCAAGGGGTTCAGCCGATTTGGTAGAAAATAGGGGGAGGTTATAGTATGCTAAAAAGGAGGTTCGCACTTTTGAACTTATAAAGCCTTGTACAACAATGGGTTATAAGGTGTGCT # Right flank : TACCCGCATTGTCCGAATGAAATCGTGCCTGGTGAACATTTTGTAAGTCGCAAATTCTTATCTCCATGCAACCCAAAAGGTTGCTTTTTTGTGATTTTCGTAAAACTACATTAATAGTAGTGCTAACGCGTCAGTTTTTCAGAGAGAATAATTACAAGGTGGCTAAGTCAGAGGGATAGATCTATCTTTTTACCTATTTATTGGTGAAATCTGGCGAATTATATGGTAAAATGTAACTAATTGTTATGTCATTTCGCGAGGAGATGTGCTTAATGTATATTGCACACGTTCGAGAACTCGATAAAGAAATTCAACCAATAAACAAGCACCTGCTTGGAGTACAACGGCTGGCGGAACAGTTCGGGGAAAAGCTGGGCCTGAAACATGTCGCTGGGTTAGCCGGGCTGCTTCATGATCTGGGAAAGTATAGTGATAAGTTCCAAGAATACATAGACATCGTTGCCTTTCACCCTGAATTGCCTCAGCCGAAGCGTGGTGAG # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 5963-6399 **** Predicted by CRISPRDetect 2.4 *** >NZ_WOAA01000041.1 Paenibacillus campinasensis strain 3CS1 NODE_41_length_20777_cov_36.4838, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 5963 32 100.0 34 ................................ ATACGATAAATATTTATTAACAAAAAAAACCCTC 6029 32 100.0 37 ................................ TGGACCCGCCCAGCCCTGATCGCATCGATCCACTGGC 6098 32 100.0 36 ................................ TTGATGCTGGGCGTCCTCATTCCAAATTTCATGGGC 6166 32 100.0 34 ................................ GGTTATATCCGGGCTTACAATCTGGCTACCAGCT 6232 32 100.0 36 ................................ AGTTTGCTGTCCGTGTACGCGGTATCCGTGGCTGGG 6300 32 96.9 36 .......................A........ TTGAAAGCCAATTATACTCACAAAGTCCAAGAGATT 6368 32 71.9 0 ..........G......CC.A......ATTTG | ========== ====== ====== ====== ================================ ===================================== ================== 7 32 95.5 36 GTCGCTCTCCATGTGAGAGCGTGGATTGAAAT # Left flank : GATGAGTATCCGCCATTCTTATGGAAGTAGGTGAGCCCTAATGCTTGTACTCATTACTTATGATGTTCAAACGTCAGGAGCAGGAGGTGCTGCAAGACTTCGTAAAGTGTCTAAGGCGTGTCAGAATTACGGGCAGCGGGTGCAGAATTCCGTGTTTGAATGCATTGTGGATGCAGCTCAGTTCACTGCTCTTAAATTGGAGCTAGCCCAATTAATTGATGAAGAAAAAGATAGCTTGCGCTTCTATCGGTTAGGCAATAACTACAAAACCAAAGTAGAGCACATTGGGGCCAAGCCGGCGATAGATTTAGAAGAGCCGCTTATCTTCTAGTGGTGCGAACCCCAAGCGCACATAAAATCCCTGGGAGGTTCGCACCTCGCGTCATTAAAGGATTTGTAGAGATTTTGGCTGAAATTAATGAAAAAATTCGTGCTCGCAAAGTAGGTTCGCACTTTTAGGCATGCGAAGCCTTGTGGCTCAAGGCTTCGCAAGGCCCGCT # Right flank : GGCTCCAACCTAATTACCAGTGCTTGAAATCATAACAGGCTTGAAGCAAAGGGGAAGAGGGAGACTGGAGAAGCAAAGCGCTCGCCTTTGTCCCCGGATTTCAACCGCTGAGGCGGTAGTAATCAAGAAATCTGGGGGTGGGCAGCGATCGGAAGTCCCCTCATTCCCCGAAGCGGCATACTTCTCTGAAAATCAAGCACTGATCTCTGATTTGAGCCCTTTATTTTGATGAAAATGGATGAGCGGTTGCACGCCATGCGAGACGTGGTCTTGTGTATATCGCCCATGGACCTGCTAACAGCGTATTGCCATTACCGTTAACACTAAGGTAGTGAAAAATAGCACATGGCTTACAAAACAAAGTGTGTATAATCATCAGGTAAGCGAATTTGCTTTCGGCAAACTCGTGATTTTTTTCACTTATATTGTGAAAAAAATAACAAACTACGAGAAGGAGTAGGTAACATGAGACATCTTAGGGGCAAGTACGGAAGAAAAAG # Questionable array : NO Score: 9.04 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCATGTGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : NA //