Array 1 164125-162227 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDTP01000002.1 Salmonella enterica subsp. enterica serovar Infantis strain inss32 scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 164124 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 164063 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 164002 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 163941 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 163879 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 163818 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 163757 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 163696 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 163635 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 163574 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 163513 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 163452 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 163391 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 163330 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 163269 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 163208 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 163147 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 163086 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 163025 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 162964 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 162906 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 162845 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 162784 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 162723 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 162662 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 162601 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 162540 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 162479 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 162378 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 162317 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 162256 29 93.1 0 A...........T................ | A [162229] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 182023-180407 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDTP01000002.1 Salmonella enterica subsp. enterica serovar Infantis strain inss32 scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 182022 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 181960 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 181899 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 181838 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 181777 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 181716 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 181655 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 181594 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 181533 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 181472 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 181411 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 181350 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 181289 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 181228 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 181167 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 181106 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 181045 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 180984 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 180922 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 180861 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 180800 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 180739 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 180678 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 180617 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 180556 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 180495 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 180434 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //