Array 1 7235-6231 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYDG01000024.1 Salmonella enterica subsp. enterica serovar Derby strain BCW_2674 NODE_24_length_59746_cov_7.78136, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7234 29 100.0 32 ............................. ACGACGTTGCCCTGCATCCCGCGCAGGTTCGA 7173 29 100.0 32 ............................. TCAGGCGTCAGCATTATCCAGTTGTTGCTCGC 7112 29 100.0 32 ............................. GAGAACACCATTGCAGCACTCCCCAGCCAGAA 7051 29 100.0 32 ............................. TTCTCGCGGTAATACTTGACAGACAACATAAC 6990 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 6929 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 6868 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 6807 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 6746 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 6685 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 6624 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 6563 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 6502 29 96.6 32 ............T................ ATGCGCGTAACGGTCATTATGTTAAATAGAAC 6441 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 6380 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 6319 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 6258 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10461-12382 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYDG01000003.1 Salmonella enterica subsp. enterica serovar Derby strain BCW_2674 NODE_3_length_261532_cov_8.8713, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10461 29 100.0 32 ............................. GCGTACAACTGGGCGGCGGGCGAGATTGGCGA 10522 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 10583 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 10645 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 10706 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 10767 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 10828 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 10889 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 10950 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 11011 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 11072 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 11133 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 11194 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 11255 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 11316 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 11377 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 11438 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 11499 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 11560 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 11621 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 11682 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 11743 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 11804 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 11865 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 11926 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 11987 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 12048 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 12109 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 12170 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 12231 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 12292 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 12353 29 93.1 0 A...........T................ | A [12379] ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //