Array 1 102309-101976 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACERL010000007.1 Pectobacterium aroidearum strain MY11 7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 102308 29 100.0 32 ............................. CGATTGATGATCGACTCGCAGAAATCGCCGCC 102247 29 93.1 32 ..G..........T............... TAGGAGTTATCGCTATCATGAATATCAGTACG 102186 29 93.1 32 ..G.....T.................... GGATAACAATTTCACCGGGCTATTTATATGAC 102125 29 100.0 32 ............................. GTCACTGGTACATAAACTCCTGCAGCTATAGC 102064 29 93.1 32 ..G........A................. GTAATCAAATTCCCCGGACCTGAGTCGGGGCA 102003 28 86.2 0 ........-...T..........G...G. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 94.2 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTTCGATGGGTGAAAATCAGATGTGGTGTAAAGAAGGATGCGCTTTCCTTCTTAGTATGTCGTCGTTGTCCTACGCTTGACTTCAAGTATCTCGCACACCTGTGGTATTTCGTTGATTAGTTCAAAGATAATGCGGTAATCCCCAACCCGTAGCCGATATTGTTTACCAGACGATTCGAGTTTTTTCAGATCCAGATTCACATCTGGAAATGTACTCAGCTCGCCCACTTTTTCTTTGATTCGTTTTCGATATCTGGTGTCAATGGTGCCGAGTTGTTTTAATGCCCGTTTTGACCAACTAATCTTAAGCATGCATCCCTCAAACGAAATTCTTCCCTGATATAAGTTAATTATAAGACAATTTAAGGGTTATGTTCATTTTTCTTATTTTTTTTGTTGATGATTATGCTGTTCCTTCAGGGACAAATCGCGGGAATTTGACGTTGGATCAGAGCCATATAC # Right flank : TTATACCCCTTGTTGCATGTTGGTCTACATGTTCTCCGCATGGGCCAAATCCCGTTTCTGGCTGGCGTGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCGTTTTTGCATTCGCCGTCACGGTGATGCGCGATGCCCATCATTTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTCTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCCACAGAGCATGCTGAGAAAGCGGCACTGTCCGAACAGCTTCAGTCTTATCAGGCGGGTAGCGGTGCTGTTCCTGTTGGTCAGACGACGCGGTATGATTTCACCCGCATTAGTCCCGCCGAACTGTATGAAACGGTAGAAGGCCTTGTCAGCAGTGGGCGGTTAGGACGTGAAGAAGGCTCCGCGCTACTGGGTTTTATCTCGTCGCCGCGCGAAAATGTCGGCAGTGTGCCGCCTTCCAATGTCTTTCAGCCGATTAATG # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 104736-103181 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACERL010000007.1 Pectobacterium aroidearum strain MY11 7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 104735 29 100.0 32 ............................. CGTTGATCTGGAATAACTACGAGGTCGATGAA 104674 29 100.0 32 ............................. TCGGATCTCGACCTGTAGTACCGCATCGCCCC 104613 29 100.0 32 ............................. AAACGACTCATACGATCCGCTAGCCTCACTAC 104552 29 100.0 32 ............................. CTGGTTGCAGAGATGCGCCAGAACCCTATCGA 104491 29 100.0 33 ............................. TTGGGCCATTCGATCTATGAAGTGGATATATGC 104429 29 100.0 32 ............................. ATCGTCAAGACAAACGATGATGTCCTTGATGC 104368 29 100.0 31 ............................. CCAACCCATGCACGTCGATAACGCGGCGGCA 104308 29 100.0 32 ............................. TGGCGTCAGCATTAGTTACCGCATTCTCAACC 104247 29 100.0 32 ............................. TGCAGTGGCCGCCGCCCCCATCGTTTTCTGGA 104186 29 100.0 32 ............................. ACTCGAAAACCTGTTTAATAAATATCTGCGTA 104125 29 96.6 32 ............T................ GAACGTATGAAACTTTCTGATGTTGCAACCAT 104064 29 100.0 32 ............................. CACCAACGACATGATGTCGCGCTCTTTAACAT 104003 29 100.0 32 ............................. TTAGCGGGTCTTCTCGATTGGGACGCATTGGA 103942 29 100.0 32 ............................. TAAAATCTTTCGCTATTAGTCTCGAACGCATC 103881 29 100.0 32 ............................. ATGTATTGAGCCCCCTCGTCGGAATGGCAGTA 103820 29 100.0 32 ............................. CCGTAATTTCAAATGGCCGGCTGTGGGTATGG 103759 29 100.0 32 ............................. CGCTCCAGTGCCTTATCCGACCATCGCCTACC 103698 29 100.0 32 ............................. ATAATCGGTTTTGATATGGGTTTTGAGCCCAC 103637 29 100.0 32 ............................. AAAATGAGCATTATCACATTTGGCAAGCCCGA 103576 29 100.0 32 ............................. GGGAGAAAACTCGGAAATATAAAGCCGAGGCC 103515 29 100.0 32 ............................. CACTCCCTCGCCATCTGTATTAGCACCGATAC 103454 29 100.0 32 ............................. GGCGATGCGGCCGAGCTGGCAGAAAATGAGAT 103393 29 89.7 32 ..A.........T..........G..... TAGGGCATAACAGAGGCACTAAAGACGCTGCT 103332 29 96.6 33 .............G............... TGGCACCCCACGGGATGCCTATATCTGCACAAC 103270 29 96.6 32 ............T................ TCCTATATAGACACGACAGCGGCCAGCACGCT 103209 29 93.1 0 .............T..............C | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAAGAGGTGTTGTCTGCGGGTGGAATTACGCCTCCGCTACCGCCGGATGATGCACAGCCGCCTGCGATCCCTGAACCGAAACCGTTTGGCGACAGCGGCCACCGGGGGCAGGGTTAAATGAGTATGCTGGTGGTTGTGACGGAGAATGTCCCACTGCGTTTACGTGGCAGATTGGCGGTGTGGTTACTGGAAGTCCGTGCGGGAGTGTATGTCGGTGATACTTCACAGCGGGTGAGGGAGATGGTCTGGCAGCAGATTATTGAACTGGCGGAGCAGGGCAACGTTGTGATGGCGTGGGCGACCAATACGGAGTCCGGTTTTGAGTTCCAAACGTGGGGAGAAAACCGCCGAATGCCGGTAGATCTGGACGGTCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : TAGTCCGTGGAAGCGGCTAAAGGATTAGCTGTTCTGGTTCGCAGTGGTACAGCTTAGCCAGTTTTTCTCGGGTGCGTTTCTGCGGCCTTGAATCTGGGGATTCAAGCTGAGAGACGGCTGCTTGGGTCATGCCAAGCGCGGTTGCAACTTCTTGCTGAGAAAAGCCTCTGAAAATTCTCCAGGCTGCCTGTAAGCTGACGTCTTGATCAATGTGGATGCTAACCACTTCGTGAGGAATAGAGACGTCATCCTCTGCGCCATGATCGTAGGGAATGCTCTCATAGAGGGCGGGATCGTCAGCATTTTCAATAAGTTTCTGATATAACTCATACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTTCGATGGGTGAAAATCAGATGTGGTGTAAAGAAGGATGCGCTTTCCTTCTTAGTATGTCGTCGTTGTCCTACGCTTGACTTCAAGTAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //