Array 1 27972-27649 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCSM01000017.1 Rothia kristinae NBRC 15354, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 27971 36 100.0 34 .................................... GAGACGCTCTGTATGACCCCCTGGGAGCCTGAAA 27901 36 100.0 37 .................................... TCGCGCGTGTTCGGTCATGCGAGGGTGTTCGGTGACG 27828 36 100.0 36 .................................... TTCCGCGACAACGGCGACGGGACCGTGACGATCGAG 27756 36 100.0 36 .................................... GTGCGGCAGGTCCGGGCCCTGGATGACGCGAGCGGC 27684 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ===================================== ================== 5 36 99.4 36 CTCGCCTCCCCTTCGTGGGGAGGCCTTCGTTGAGGG # Left flank : CCTTCACCGCGTCCGTAAGTTCCCCGCGGAAC # Right flank : AATGTCGACGCCGAGGTGCAGGTAGCACACGCGACCCACGCTCCCCTTTAGGGGGAGGCCTTCGCCCGCTCCAACAGCCGGACGCACCTCAGGCATCGTCGACGTCCGCCACAGTAGAATCGAAGCCACAACGACGTGCGCCACCGAGCAAGGAGCGATCAGCGATGGTCCGCCTCAGCGACCTCATCTCCGTCCCAGCGATCCAGTTGGAGGTCGATGCCGAGGACTGGCGCAGCGCCATCCAGCACGCCGGAGCGCTCTTGGCCGACGTCGGCGTCGCCGGGCCGTCCTACACCCAGGCCATGGTCGACGTCGTCGAGGAGCACGGGCCGTACATCGTCATCACGCCCGGCTTCGCCCTGGCTCATGCCCGACCGGACGCCTCGGTGACCGCCACCGGCCTGTCCTTCGTCCGCCTGGCCGCACCCGTGCGCTTCGGTCACGCCTCCAACGACCCCGTCACCATCGTGATGGCGCTGGCCGCACAGGACCCTGGCGCC # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCCTCCCCTTCGTGGGGAGGCCTTCGTTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.90,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 69529-71712 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCSM01000015.1 Rothia kristinae NBRC 15354, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 69529 36 100.0 35 .................................... CAGTCCGGGAGGAAGAGCAGATGAGCACGTCACCC 69600 36 100.0 34 .................................... AGTCGCAGAGCCTCCTCTTCGGATTCGGCTTCGA 69670 36 100.0 37 .................................... CCGCGCAGCTGGGCGTGGTCCGCTCGGGCCGCGGTCG 69743 36 100.0 35 .................................... GACAACCCCAGCCCCAACGAACCGACCGGGACCGC 69814 36 100.0 36 .................................... TCGGCGCCACAACGACCGTGGATGATTCCGCGAACG 69886 36 100.0 34 .................................... GACAACGAGACCTCGAAGTGGAGGCAGACCCTGA 69956 36 100.0 35 .................................... CCATTGGCGGGCTCCCGCTGTTCCTCGAGCCAGGC 70027 36 100.0 36 .................................... CCGAGGACGAGTCTCGGGCCGCAGTGTGCCCGAGAC 70099 36 100.0 35 .................................... AGGGCCCGCGCCCGTGGCTCGGCGCTCGGCACTGC 70170 36 100.0 36 .................................... TCTAGTCATCCCCTGACTAGATGCAACTTCCACCTG 70242 36 100.0 35 .................................... GCGGACGCTGTCGAGGAATTGGTTGCGTCGCTTAT 70313 36 100.0 37 .................................... CGGCGACTTCCGCCTGCGGCTTCGTCAAGTCCAGCTG 70386 36 100.0 36 .................................... CACCAACAAGTCCGTCCATGACCTGACCGACGTGCC 70458 36 100.0 35 .................................... CTCAAGGAGGCACACGATGGACGAGAAGCCGCTGT 70529 36 100.0 35 .................................... ACGCTCAACGGCATCCGCATTCCCAAGGAATCCTC 70600 36 100.0 36 .................................... CGGCACGGTCTGGAGCTCCGGGCCCGGTAGGGCCCG 70672 36 100.0 35 .................................... CTCCACATCCCGGACTCGGAGAAGAAGGCCAGCCC 70743 36 100.0 35 .................................... GCCAGCGATGAGGAGCCCGCCTTCTGCCCGGAGTG 70814 36 100.0 36 .................................... GGGGATTTCACGGCCACGGGCCCCATCGTGTGCTCT 70886 36 100.0 35 .................................... ATGTGCCCGGCGCGGGCGGCGGCCACCTGCAGCTG 70957 36 100.0 35 .................................... GTGGTCCTGGTAAGCCTTCTTGCCCGGCCACGGCA 71028 36 100.0 36 .................................... CTGTGGGTGGTCTGCGCGTTCTTGGAAATCACGCCG 71100 36 100.0 37 .................................... CGCTGCAGCTGAAGACCTCGAGCGTGTTCGTCCGGCA 71173 36 100.0 35 .................................... ACCCCACCCCGCTACCTCACACCCCCACGCACCAC 71244 36 100.0 36 .................................... TGGTAGTCGTCCCAGGTCTTGCCGTTCGTGCTGTTC 71316 36 100.0 37 .................................... ACCCCGGCACAGCAGGACTCACCACCGACGAGTACCT 71389 36 100.0 36 .................................... CGCAGGTCTACGGTGGGCCGCGCACCATCCAGGGAG 71461 36 100.0 34 .................................... ATGATGTTCGATCCGACGGAGGCCAGGAAGGCGT 71531 36 100.0 36 .................................... GTGCATGCATGCTGTCCTGCCAGCCTGCTCGCGTGA 71603 36 100.0 38 .................................... TCGTCGTGAACGGTGGTGGTGAGGGTCGCGTGGAGTGC 71677 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 31 36 100.0 36 CTCGCCTCCCCTTCGTGGGGAGGCCTTCGTTGAGGG # Left flank : CCGGGATGACGTCCGCCGGTATCTCGTCACCTATGACGTGGCTCAGGACCGGCGCCGGACTCGGCTGGCGAAGGAGTTGGAGCACTATGGGGACAGGATCCAGTACAGCGTGTTCCTCTTCGACGTCTCACCGGCGGCGATGCTGCGATTGAAGACGGAGATCCTGGATCTGGTGGATGCGGGTGAGGATTCTGTGCTGATCTGCGATCTGGGGCTGAAGTCCGAGGTCTCCGACAAGAACTTCCAGTACCTGGGAGTGGAGCGTCCGATCACGGACGACTCCGTGATGATCTTCTGACGGCCCTGGTGCGTACTCGAGGAACCGCGAGCGCTCCGGCGGTAGCGGATCCTCGGCGAGCCGTCGCGCCACTGCTTTCCCCGGTATTCCGCGGCGGAGCGCCCCATCCCGGGGTGACACGGCCGGCTTCCGCTAGGCTGTGGAGCGAGCGCTCGCATGACCCTCGGTTTCCCATAGTCAGACCGCGTCAATTTCGGTCAGG # Right flank : GAGGCGTTCATCAAGCAGGCGGATATTTCCGAGTCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCCTCCCCTTCGTGGGGAGGCCTTCGTTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 33-764 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCSM01000036.1 Rothia kristinae NBRC 15354, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 33 36 100.0 34 .................................... GCGGTCAGCTGGTCGGGTTCGAGTTCCACCCCCA 103 36 100.0 35 .................................... ACCGACCTGATGGGCTTCACTGGTGATCCCACGAA 174 36 100.0 36 .................................... GGGAACATCTTCTTGGCGCCCTCGAAGGACCCGTTC 246 36 100.0 35 .................................... GACCCGCGCGCCTGGGGATTCCACCCGGCGCTGGG 317 36 100.0 34 .................................... TGGAGTCTGAGCGTTTCATGGAGGGGGTTTCCGG 387 36 100.0 37 .................................... GGTGGGCTGGCCGGAGGGTGCGCTCGGTGAGGTCCGG 460 34 72.2 23 ................T.A.G.--.CAG....G.C. GTCTTTTATGCGCAGGCACCGGC Deletion [517] 517 36 100.0 35 .................................... GGGTCTGCCAGCGTCCCGGAGGTCACCTTGCAGTC 588 36 100.0 34 .................................... TCCAACCTCGTCTCTCCGGCACATGAAAGCCCGG 658 36 100.0 35 .................................... ACGGCTCAGGTCGGGCATACAGCCCTCTTGCGAGT 729 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 11 36 97.5 34 CTCGCCTCCCCTTCGTGGGGAGGCCTTCGTTGAGGG # Left flank : CCACGGCGAACCCGGACACCCTCCGGGCCGTGC # Right flank : TGGTGGGCCGACTGGTACGACAATGAGACCTCGAAC # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCCTCCCCTTCGTGGGGAGGCCTTCGTTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [11.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //