Array 1 137567-136689 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT906434.1 Neisseria zoodegmatis strain NCTC12230 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 137566 31 100.0 34 ............................... CTTTGTGCAGGGTTTGGTGCTCGTAATCGACCAC 137501 31 100.0 33 ............................... GCACAGCTCAAATATCCGTCCGCTCGCCCGTCG 137437 31 100.0 34 ............................... AACGCTACTCAAGCACAACAAATCAGCACCGTTA 137372 31 100.0 34 ............................... CAGCCCGTCTAAATAATCATCAGCAGGCGCATAA 137307 31 100.0 34 ............................... GAGCCTTTGGGTAAGCAAAACCGCTGAAACGGTG 137242 31 100.0 34 ............................... ACCGTAGTAATAAAGTAATTCGGCTTGCTTTTCT 137177 31 100.0 34 ............................... ACACATATCGCGTGTGGCAGACAGGATTAAATTA 137112 31 100.0 35 ............................... GCAAGTTGGCCGAAGCGGTCCAAGTATCGTTGACA 137046 31 100.0 34 ............................... TTTACAACAAGCTTAAACCTGAAATTGATTTGCG 136981 31 87.1 34 ......G...C.G.C................ AGTAAAAGAAACCACTTTAGCAGAATAGCCTTTG T [136972] 136915 31 96.8 34 ..........C.................... CAGCGGCCAAAGTAGCTTGCAAACGGGCGGGCAG 136850 31 93.5 34 ..........CA................... GGCAAAAGCAATCACATTTGCCCCGCTGCCGCAG 136785 31 90.3 34 ..........T........A..C........ TACAAAGTACCGAATCAGCGAAACGCAGGAAGTG 136720 31 80.6 0 ..........T.....AT.....TA.T.... | T [136709] ========== ====== ====== ====== =============================== =================================== ================== 14 31 96.3 34 TCAGCCACCTGGCGTGGCTGTGTGTTGAAAC # Left flank : AAAAACAGCTCGACAACCAAAAAAACGTATCCGTTAAATCGTTTGTGTTCGACTCGGGAACCGTTGCCTATGACTTGTTGGAAAGCAAAATCAACAGCAAACTGGAAGCAGCGCTCGGCACACCCGCCGAAACCGCAACCCAAGCCGCCCAGCCTGCCGCTGGAACAGATTACGCCTATCGAAATACGGCCACGGCCTCCGTATCGGACGATCCCATCGTTCTTATGATTTGATTGCTTGTTAAATAGGCAATTGAGGCCGTCTGAAAATTTTCAGACGGCTTCTTGAGCATATGCTACCTATTTGTTTGGGCGGAATAACAAATCAGCGCCAACCCGCAGCAAACATACGAAAGCTGCAAGGTTGGCGAAATTTTTTACTCAGATATTCAAGCGATTAAAACCAAGCCGCTGTGATATAGTCTGCTCTGGCATCTTTTTGAACCGTTTGGCGAAAATCGGGATTTAGATGATTGTCGGATAACGGTTTGGGAAGAGGCT # Right flank : CATCCCTCCAACATAAGAGGCCGTCTGAAAACTGCTTTCAGACGGCCTCTTATCATTTCAAATGCCTTAAATGCGTTTTGCCAGTTCTTCGGCTTTGCCCACATACAGCGCGGGTGTTAAAGCCAGCAGCTGCTGTTTGGCATCGGCGGGGATGTCCAGCGATTCGACAAACACTTTCAGCACTTCGGGCGTGATGCCGTCTTTGCCGCGGGTGAGGTCTTTCAGTTTTTCATACGGATTGGCCACGCCGTAGCGGCGCATCACGGTTTGAATCGGTTCGGCCAAAAGTTCCCAAGTGGCGTCCAAGTCGGCGGCTAGGGCGGCGGGGTTGGCTTCCAGTTTGTTCAGGCCGCGCAGGTGGGCGACCAAGCCCAGCACGGTGTAGCCTGCGCCCACGCCCATGTTGCGCAGCACGGTGCTGTCGGTGAGGTCGCGCTGCCAGCGGGAGACGGGCAGTTTTTCCGAAAGGAAGCCCAACACGGCGTTGGCCATGCCCAAGT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCACCTGGCGTGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCAGCCACCTGGCGTGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [23-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 143414-143248 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT906434.1 Neisseria zoodegmatis strain NCTC12230 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 143413 32 100.0 35 ................................ GGCGGCATGGCCGGACGCGGCCGCAAAGTGAAAAT 143346 32 100.0 35 ................................ ATACAGACGAAGAAAAAAGCATAGCGGATGCAATA 143279 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 3 32 100.0 36 TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : AAACCCAAACCGCTGCTTCTGCACGCGCGTCAAAGGCGACAGCATGTTTCCCACTTTAATCGACCTTGGCACGGTTTTATGGTGTGCAACTGCCAAATACACAGAGGAAGGTATCTATCTCTTCCGACAATACGACGAGATCAGAATCAAACGCCTACAACGCCTGAATGCCCACACCTTTAACATTATTAGTGATAACCCGAACAAAGGGATATATCCAACAACAGAGTTGGATTTATCCCAAACCGAGCCGCATGATTTCGAGATACTTGGACGCTACCTGTGGAGCTGTGGCATAGCCAAATAATCGAATCTGATAATTCCACGATTATTCCATGACAAAAAACGCGCAAAAATGAGCATATTTCAATCATTTTTGCGCGTTTTTTTGCGTTTTAAATTTTCACCTGATTTTTTCGTTATTTTTTGATTTCCTTAAATTTTTCGCGTTTTATGTAGTTGTATATCACATGACAAAACTAACACCACCCCACAGCGGA # Right flank : TACAAAAACAAGCCGGCCAACTTGAAAAAAAATCGTCAGCTGCCCTCAGCCGCCTAATCATTGAAAAATTCAAACGTTACCGTTTTAAATCCCCAAAAGAAACAGACGACTTATCTGAGGCCGTCTGAAAAATCATCTATTTCCAAATACCTAAAAATCCAGCTACAAACTAAATGAATTAGCTGAAATATTTTCAGACGGCCTCTCGGTTTTTTTAGTATGTTTGAAAATCTGTATCCTGCTGAAACCAAACAATTTTCCGTGCATTCACCCAAAGCGGCCATTCGCTGCCGGGTTGTAGGTTGAGATTATGGGTTTCCGAGGGATCGAGGTGCAGCTGTATTTCGCCGTGTTGCGGGTGGATGAGTATGAGTAGGCTGCGGTCGGGCAGGCGGGTGTGGGCGGTGATTTTGGCGTTTTGTCCTTGAGGGTGGTTGAAGTGTATGGCTTGTCGGGGAATGTAGCGGGTGTCGTTGACGTTGTCGGCGCCGATCAAACGG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 188805-184727 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT906434.1 Neisseria zoodegmatis strain NCTC12230 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 188804 32 100.0 36 ................................ TTCGCGCTGCAAGCGCGTACCGATGCGGGTAAAGAG 188736 32 100.0 35 ................................ ATATTCGGTCATCTGAACTGTTCCCCCGCCTGAAT 188669 32 100.0 34 ................................ AGGTTAAAATCAGCGCGTAAACTTGAACGCAATA 188603 32 100.0 35 ................................ TCATAAATCCTCTCAAAAAGGACTACGAAATGAAC 188536 32 100.0 34 ................................ ATTGCGTGTCTGCAGTAGCGGAGAAGATGGCATG 188470 32 100.0 34 ................................ ATCCGCCTTCGGGCGGATTTTTTTTGGCCTAATC 188404 32 100.0 33 ................................ ACAGCATACGTCAACAGCGCGGCAAAGCAAGTT 188339 32 100.0 35 ................................ TTTATCAGCAATGATGCCGACTTGGCCTTGTTTAA 188272 32 100.0 35 ................................ AAGAAATTCAACCAAACACAAGCCGAAAAGCTGGC 188205 32 100.0 34 ................................ TCGATGTGGCCGAAATCAGACTTAATCAGGTTTA 188139 32 100.0 35 ................................ AACAATAAAAAAACGGCCTTGAATATTACGCTACC 188072 32 100.0 34 ................................ GGGCAAAACCGCATCAATCGTGCATATGTTGATG 188006 32 100.0 35 ................................ GCCTTTTATCAGAAAACCTAATAAATCAGATTCAG 187939 32 100.0 34 ................................ AAGTAATGCAAAGGTATGTTAAATTCCTGCTTTC 187873 32 100.0 35 ................................ CACCAGTTTGCGGTCGGCCAAATAGTCAAGCTGCT 187806 32 100.0 34 ................................ AAGTGGAACGAAAACCAAATCAGAGTACGCGAGA 187740 32 100.0 34 ................................ CATATACCGACCTGAACACCCTGATCCTGCATGG 187674 32 100.0 34 ................................ CGTATTGTTGAGGCAACTGCCGATGAAATTATTC 187608 32 100.0 33 ................................ ACCATCAAAGTCCCCTTAAAGGTCAAAAAACCG 187543 32 100.0 33 ................................ GCCAAGTCGGGTCTTGTTGCAGCTTGGCGGGCA 187478 32 100.0 33 ................................ CACTCAAGGAAAGTGATGCCGACAATTGTCAAA 187413 32 100.0 34 ................................ CAGACAGTATGCTATATCGTATGGAAAATTTGCG 187347 32 100.0 33 ................................ TCTTGTTGCGAGCAATACGGCGAAAGCAAAGGC 187282 32 100.0 35 ................................ CGTTGGCAGAGGGTAAAATACAGCTGCTACCGCCA 187215 32 100.0 32 ................................ CCGACACGATGGACATTCTGCCTGCGCCCCAA 187151 32 100.0 34 ................................ AATAAAGCCGGTTAAAAAGGCCAAGCCACCTTCT 187085 32 100.0 34 ................................ AAGCGCCAACGCATCCAGCACGGCAACCGGCAAC 187019 32 100.0 35 ................................ CTAGCTCATCGCTCCCCCGAACTATTGAGTTTTTG 186952 32 100.0 34 ................................ GACGAGGGTGTCTTTTTTTGGATTTGCCATAGTC 186886 32 100.0 35 ................................ TCGTGGTGCGTCAGGCAACTCGATTAAACAGGAAA 186819 32 100.0 35 ................................ TACCAGCCGCATAAGTGCGAGATACAGCCTACACA 186752 32 96.9 34 .................A.............. ATCTTCATTTTGTTCAGCTTTCTGAAACTGCGTG 186686 32 96.9 33 A............................... ACTGCTGGAAACGCAGGATTGGGCGTTAATTAC 186621 32 100.0 34 ................................ TTTGTCTTGACCGTTGATTGGTTGCTCACAATCA 186555 32 100.0 34 ................................ TTTGTACGCTGAGGACAATATCTATACAGAGATA 186489 32 100.0 34 ................................ CCGCAAACCTGCGATGATGATGTGCTCGAAACAC 186423 32 100.0 35 ................................ TGGAGACGGTACAGTTTTTGCAGAAAAAGGGTGTG 186356 32 100.0 34 ................................ CCAAAAAACCAAGTACGCAGCCCCCAAAGTAAAA 186290 32 100.0 36 ................................ CAGACCCGCGCGCAGGCCGATGCGTTTTTGGCCGCG 186222 32 100.0 37 ................................ AGAGAATGGCAATAAAGCCGCTGAACAAATCGCGCAG 186153 32 100.0 35 ................................ GTGAGTGACCAGCAGCTCGGAAGACACGGGCGGCA 186086 32 100.0 34 ................................ TCATGCAATTGGGTAAGCGGGTTGATGCCTGCGG 186020 32 100.0 34 ................................ GGAAGACGAATTTACCGCCCTGTTGAAAGAAAAA 185954 32 100.0 34 ................................ TGATTAAATCTTACCGCTACCCTTAAGCAACTCG 185888 32 100.0 35 ................................ TATTGGAAGTAAGCTGAAATCAGGGTAATCTGAAA 185821 32 100.0 33 ................................ AATTTCTGTGTCGGCTTATTTACTACCGGCAAA 185756 32 96.9 34 ...............................T CCCTTGCCATTTTGGGCGTTGTAGCGGGGCTTTA 185690 32 100.0 35 ................................ CGGCAAGGCCGCCCAAAAATCCGCCCGCTGCTGAT 185623 32 100.0 34 ................................ TTGATTTGTTCATGATAAGTTCCTTTACAAATTT 185557 32 100.0 35 ................................ TATCAAACCCATAAAGAGGAGATGGAGCGCGGTGC 185490 32 100.0 36 ................................ AAGCATTACGCCGTGCATGATTTTGCCGAGTTTTTG 185422 32 96.9 34 ........T....................... CTCTATTACGGATAAAGTAAATGACATTTACACT 185356 32 100.0 35 ................................ CACCAAATCATTTAAGGGGCGCCGCTCTTCCGCAG 185289 32 100.0 34 ................................ ATGTGTGAATTTGTAGAAACGGGCAGCAATGTTT 185223 32 100.0 35 ................................ TACATATCCCCCCAAGTCCCCCGGCGCAACAGATA 185156 32 100.0 34 ................................ ATGCCGCGATGCATGAGGCGATGAAGTCAGGCAA 185090 32 100.0 34 ................................ TACAAACAGAATGCCTGTGCTTTTTTGATAGCCA 185024 32 96.9 34 T............................... AAGCTCCGCCTTGATGGTCTCGAGCATTGGGTAT 184958 32 93.8 35 T.......T....................... AGCCGCGAACTGACACCGGTGTTGCAAGCCAAAGG 184891 32 96.9 35 T............................... GACGTGCGCCTGCGCTACGACGAAATCGACGCATG 184824 32 96.9 34 T............................... AGATGATGCCCCAACACATCTGCCGCGTGCTGAT 184758 32 93.8 0 T............A.................. | ========== ====== ====== ====== ================================ ===================================== ================== 62 32 99.4 34 GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : AAATAGGGGAAATAGCATGTTGATGTTGATTACTTATGATATTTCGCTGGAAGATGCAGAGGGGCAGGCGAGGCTGCGGCGCATCGCCAAACATTGTTTGGACTACGGCGTGCGCGTGCAATATTCGGTATTCGAGTGCGACGTTACGCCGGATCAATGGGTAAAACTGAAGGCCAAGCTGCTGGATACTTACCAGCCCGAAACCGACAGTCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAGGTGGAACATCACGGCGCGAAAGCGGCGGTAGATGTGTTTCAGGATACGCTGATCGTGTGAATCGCTAACCCGTGGTTCTCATGAAAACATGGGGAGGTTAGCGATGCGGAATTGTTCTTTAACAATCAGGACATTAGGAAAGCGGGTGTGGCGGAATAAGGCTGTGTTATACTCGCTTTTCGCGTTTTCGGAGAGTTTTAGCGAATCAGGGCCGTGCAAGCCTTGATGGATAAAGGTTTCTGAGAAGGCT # Right flank : TTTAAACCATGTTTAAAGGGGCTTTTATGAGCGGATGTAAGGGCGCGCGCGTTTTGTCATTGGTTTGCATTTTTTTTGTCATGCACTGGTGGGAATCGAGCCATGACAAAAGCAGCGCAATTTTCCGCCATCCACACTAGAATTTAAAAACCATATTATCCACATATTTCGCCCTTGTAGAGACGCTTGCTGTGTAACTTACATGCTCCATCCCATCAAATACCGCCCAATCGTCAGGGCGGCATTCTTTTATGAAATCCAAATAATCCATAAACTCGCTGCGTGTGCTGCTGAAGAATACGAAAGGCGGGCGAACCATGTGGATAAGACGCAAAAACTCAACCATGCCGAAGTAATTTTGGTTGGCATACATGCCTTGTAATGTTGATACATACGGGGGATCGAGTACGAGCAGGGTATCGGGCTGCGATGTATATTGGGGCAGCAGGGTTTGAAACGGCTGGGAAACAATCTCTAATCCTTTCAAATAGTATTCGGCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //