Array 1 62925-61033 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYD01000003.1 Moraxella catarrhalis strain CCUG 57283 contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 62924 28 100.0 32 ............................ GTCGGCTGATGATATTGGGGTGTATTTTTAGT 62864 28 100.0 32 ............................ AAAAACCCTGTGATGATTGGCGTTGAACAAAT 62804 28 100.0 32 ............................ GCTCCAGCTTTGGCGGCGGCGTTAATCAAATC 62744 28 100.0 33 ............................ CTGTGATTTTATCAGCTAAAACTTGCCCACGGA 62683 28 100.0 32 ............................ AACTTTCAATAAACTGCTGCCAGCTTTGATGC 62623 28 100.0 32 ............................ ACATCAGGTGATCAGGCAGTTTTGGCAAGACT 62563 28 100.0 32 ............................ AGCAAATACAGCCAAAAACCAAAGCCAAGATA 62503 28 100.0 31 ............................ GCGATGGGCGGTATTTGATGATGTATTTGAT 62444 28 100.0 32 ............................ ACCATCTACAAGACCATATATTTCACCCTCTG 62384 28 100.0 33 ............................ CGCTAAGAAATCATGGAACAATATTAAACGCAG 62323 28 100.0 32 ............................ TTGAACGCACGCTAACAACAAACAATCAAAGC 62263 28 100.0 32 ............................ TGCTCAAGCGAACATGGTAATGCGTGTATTTC 62203 28 100.0 32 ............................ ATCAGCGTCTGCCGATGTTGTACCACTTGCCC 62143 28 100.0 32 ............................ TGATAGCATGTCTAGCACTTTATCAGCGTCTG 62083 28 100.0 32 ............................ AAAGTTACTTGTGTTTTAGTTTGGGCAAGATA 62023 28 100.0 32 ............................ AGACCAAATCCGCCATGCTTGTTTACTACCAC 61963 28 100.0 32 ............................ TTATCGTTTTTATGATGCAGTGACACGCTTTT 61903 28 100.0 32 ............................ TTAAAGTATATCAAGAAGTTAGTAATGTTGTT 61843 28 100.0 32 ............................ TGCTGGTTTTGTCTTGATGTGTGTATTATATA 61783 28 100.0 32 ............................ ATTTAGTGCTTATGTTGATGTTACTCAACAAA 61723 28 100.0 32 ............................ AATTTGCGTCGGCGCAAATAAGAGGGTTAACA 61663 28 100.0 32 ............................ GTTGTTAAGCTTTGATTAAGTGTGTTAATACT 61603 28 100.0 32 ............................ AAGCGTTAATAGCTTAAGCGAAAGCTTAGCAA 61543 28 100.0 33 ............................ AAAAAGAAAAACCGCCAGCACATGCCAGCGGTT 61482 28 96.4 32 ..................T......... ATATTGAAGCGTCTTAGATAAATCTCTAACTT 61422 28 100.0 34 ............................ AAAAAAGAAAAACCGCCAGCACATGCCAGCGGTT 61360 28 96.4 32 ..................T......... ATATTGAAGCGTCTTAGATAAATCTCTAACTT 61300 28 100.0 32 ............................ TCATTATTATCGCCAAAACTCACCCAGTCAAA 61240 28 100.0 31 ............................ AAAAGTTCGGTAAAACTTTTAAGTTATCTGT 61181 28 100.0 33 ............................ AACCGCTTTAAATGCAACAGATAAGGCATCTGT 61120 28 100.0 32 ............................ TGGGGAAGTTAGGCATTTAAAATGGCAGGATA 61060 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 32 28 99.8 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGACGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //