Array 1 8724-7172 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJOR01000010.1 Streptococcus intermedius strain BCC01 D8824_contig010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 8723 36 100.0 29 .................................... CAAACCCTTTTAGCATGTGCGCTTACTTG 8658 36 100.0 30 .................................... TATACTGGCTTTGTCAATGTGATTGCGGAA 8592 36 100.0 30 .................................... ACCACTACCCAAAATGAGTGACACGCCCCA 8526 36 100.0 30 .................................... TTGTTAAAGGCAATAATTCCAAATATCTAT 8460 36 100.0 30 .................................... AAATTAAGGGAGGACTTGTTTAATGGCATC 8394 36 100.0 30 .................................... CATTTGTAGAAAATCAATTTTCTGAAGGGT 8328 36 100.0 30 .................................... CTGTAGATAGTGTGAAACCTTATGCAATCC 8262 36 100.0 30 .................................... AAAATTATTACATTAAAACCCAAGGAAAGC 8196 36 100.0 30 .................................... ATATCTTCATCTAAGTCGTATTTTGTGTAA 8130 36 100.0 29 .................................... TGAGTCATTATTACAATCACAATCAAATA 8065 36 100.0 30 .................................... TGGTAATAACAATAATGTCCCTAGCGATCA 7999 36 100.0 30 .................................... GTGCAACGTTTATACCGAATACCTCTCACA 7933 36 100.0 30 .................................... TGATAAGGAAATTTCCGACCGCCAAGAATC 7867 36 100.0 30 .................................... TTACACTATAACATAAAGAAAGGAAAATAT 7801 36 100.0 30 .................................... TTAATTATTTTTTATACTGTTATTATATAA 7735 36 100.0 30 .................................... AGGAACGTAATACCAGAGATAGTACTTTAT 7669 36 100.0 30 .................................... TTAATAATATAAATGTTGACAATTGGATTA 7603 36 100.0 30 .................................... TAGGTAAAGCAATAGCGAGCACAAGGCGCG 7537 36 100.0 30 .................................... ATTAAAGGATTGAATCCCTGCGGCAACCGC 7471 36 100.0 30 .................................... GGGCAGTTTATCCGCTTGCAACACTCGCAC 7405 36 100.0 30 .................................... GTAAAAAGTTCCAAGAAACTTGGGACGACA 7339 36 100.0 30 .................................... GAACAAGCACACGCACACGGAAATCGATTT 7273 36 100.0 30 .................................... AAATTATTAAACGTAAAATGCCACGTCCTC 7207 35 77.8 0 ..................AA-..C.T.G.A.....T | C [7176] ========== ====== ====== ====== ==================================== ============================== ================== 24 36 99.1 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC # Left flank : ACGATTACTTGAATTATTGCTCATTTGTAAAATGTTGCGAGCAACTAGAGGAGATGGCCGACAATTACAATAATTTTAGTGTCATTATTTTCCCGTCAAATGAAGGCTATCTTTATTTGAATCGCGAGAATATGGAATACGTCAATATTGTTTCTGATTTGGTTGAACATTTTTATGAATTTTCTTTTATGTATGAAAGGTTTATTGGTCAATATCCTACTAACGACGTACCTACAGAAGATGATTTCATCGTCTCTTTGCAAAAGATTTCACCATATTTATTTAGTAAAGACGTGACACATATGAGTTTATCTATCCAAGATATGGTAACCTTGAAAATTATGAACAGTTTATACCATTACAACAAGAAAATTCATTTTGCTTATAATCCACCTACTCAATTATTAATTAATTTTTTAAAAAATTAAGATTGACAAGCTCATCAAAGGACTTTATAATCAATGTAAGGGTACAAAAATCAAAAAATTTTTTAATTTGAG # Right flank : TATAGAACTCATTATTGGGCATTATTTATGTAAAAGAAATTTAATCAAATAGTTATCTATGCAAGATATTAGTGGAATTGTAATTTAGGTTGAAATGTTTTATAATGAAAAGGAACAAGTAATATTAGGGGGATTTCTAATGGAGAGAAAAATAAAAAAATCAGTCGTTGCGACCGGCTTAGCTGCAACGACAATCATTTCAGGTAGTCTATCACATGCAGTAAATGCAGAAGAAGCAAAACCAAAATCCACTGAACCAAAGACATCTGAAAAAATTACAAAACCAGTTACAGAATCAGATATTCAATCAGCAAAATTGGAAGCAAATGCTGCGAAAGTTCAGAAAGATACGCAACAGAAAGTTGTAGATCAAGTAAAAGAGGATGTAAATACTTCAAAGGAAGCAGTAGCAAATAACAAGAAAGCCGTAGCAGATGCAGAAACAGAAAAAAATGCAGCGACCTCAGAAGTGATTAGAACTGCAAAAGAAAAAGTAAAAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //