Array 1 78175-75828 **** Predicted by CRISPRDetect 2.4 *** >NZ_QIXC01000010.1 Klebsiella variicola strain WUSM_KV_46 NODE_10_length_149573_cov_20.8861, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 78174 29 100.0 32 ............................. CAGCGCCTGGGAGGGATTCCGGATCCAGGTTA 78113 29 100.0 32 ............................. TCGACAGCCGTGACCATGATGCGCTGTCGAGA 78052 29 100.0 32 ............................. TTCGATGCTGACCTTAATATTGATTACGGTGA 77991 29 100.0 32 ............................. CATTTCAATAACGCGACAGTGTTCTACTGTTA 77930 29 100.0 32 ............................. AATTGGAGAGGTTTAATGTTCGGGATGCTGAC 77869 29 100.0 32 ............................. TTGGCTTACCCGGGAGATCAGTAACCCGCAGT 77808 29 100.0 32 ............................. GTAGTGAACATCAGAGCCAATGGTGATCTGCA 77747 29 100.0 32 ............................. TCCCGCCTCAACAATCCCCAGCGCATGACCAT 77686 29 100.0 32 ............................. TGTCCTCAATCTCCCACACTCGGCATGCATAT 77625 29 100.0 32 ............................. CGTGGTTTTGAATGGCAAATCGTCTTCTGACG 77564 29 100.0 32 ............................. GCGATAGAAACAGAGGGGTATTTTGGGCGCGG 77503 29 100.0 32 ............................. GGTTCGGCGGCGACGCTAAATCGGCGCAGGCG 77442 29 100.0 32 ............................. TTTTTAAAAAGGCGATAGAAACAGAGGGGTAT 77381 29 100.0 32 ............................. GTATAGAGAACGCCGCACAGCGCATTAACCGT 77320 29 100.0 32 ............................. GTGGTACGCCAGTTGTCCCGCTCCTGCTGCGC 77259 29 100.0 32 ............................. TTCGGCGACGGCTACGAGCAGGTCGCGCCGGA 77198 29 100.0 32 ............................. CATTATCGGGGCCGGTGAAATGCCGCGCCCTC 77137 29 100.0 32 ............................. CCCCATTACGGGAGGTGCTCTTGCCTGATAAC 77076 29 100.0 32 ............................. GTTGAACACTCAGGCGCCCTTGCCGTGAGCTC 77015 29 100.0 32 ............................. GGTTCATCAATCGCTCTCGTTCTGCCCGTTGA 76954 29 100.0 32 ............................. GCGATAGCGAATACTCAACATCGCAATATGAC 76893 29 100.0 32 ............................. CGCTGCCAGTGCAGCGGGACGGGGAAGACACT 76832 29 100.0 32 ............................. ATCGCCGGGGCGCTCAATACCGCCGCACTGGG 76771 29 100.0 32 ............................. CTCGTAGTGGTCAGGAGACAGAGTGATGGCAG 76710 29 100.0 32 ............................. GCGCAGCCGCTGAAAGTATCAGGTACTAAGGC 76649 29 100.0 32 ............................. TAGTAGGGCGGTGAGCCGTCTTGCTGTTCGAA 76588 29 100.0 32 ............................. CTTGAGGGAGTGGATAATTGACTGCACATCCT 76527 29 100.0 32 ............................. GCTCGTTGTTTTCCCGTCGAACGCGCCGGAAA 76466 29 100.0 32 ............................. AGCTCCGCATCCGCAGCAGAAACAAATCCAGT 76405 29 100.0 32 ............................. AAATATAATGGGAATTGCCCCGCTCCGGCGGG 76344 29 100.0 32 ............................. CGGGATCGCTGCCACCAAACGGCTGATAATGG 76283 29 100.0 32 ............................. CTCGCCCCAGTCCGGTTTGCTCATCAACTACT 76222 29 100.0 32 ............................. GCGGCAACGCCTCACAGATGCACAAATAAATT 76161 29 100.0 32 ............................. CGAAGACACGCTGGCACAGATTGCCGAGCTAA 76100 29 100.0 32 ............................. CATGTCAGCCCCTCAATGTTATAGCGCTGCTG 76039 29 100.0 32 ............................. TTCAATGCGGCGATAACTTCCTTTAAATCCAC 75978 29 100.0 32 ............................. GGTTGCGACATCGCGCCAGGTATTAATCACGG 75917 29 96.6 32 ............................A TCGACGATGTTCTGCGTGATGGTGATGTATGC 75856 28 82.8 0 ...........AT..-.........G..C | T [75843] ========== ====== ====== ====== ============================= ================================ ================== 39 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGTTCTTGCGGCAGGCGAAATTCAGCCACCCCCACCACCTGAAGACGCACATCCTGTAGCTATCCCACTCCCTGTCTCTTTAGGTGATGCAGGCCATCGGAGTCGTTAACGATGAGTATGTTGGTTGTGGTGACAGAGAATGTTCCTCCGCGACTCCGTGGACGGTTAGCCGTCTGGTTGCTGGAGATTCGCGCTGGTGTGTATGTTGGGGACATCTCAACAAAGACACGAGAAATGATATGGCAACAGGTTTCCGTTCTAGCAGAAGAGGGGAATGTTGTTATGGCTTGGGCGACGAATACCGAATCCGGATTTGAGTTTCAGACATATGGTGTGAATAGACGTATTCCGGTGGATTTGGATGGACTGCGGTTAGTATCTTTCCTTCCTGTTTTAAAACAATGAGTTATATGCTCTTTAATAATGTAAAATTGTTGCTTAATTGTTGGTGAATTGTTTTTCAGTTAAAAGCTATTGATATTGAAGTCTATTTTTTTAGT # Right flank : GCAATTAACAATCAGGCGCCATCTCATAGGCTGTTTGATGGCGCAGGATCAGCACCGCTTGCCACCAGCCCTGCGCCTGAGCTTTTTTGTGTCCTTTTGTCGGCAAAGCATTGGTAAACGCTTGGGCGGCGTCTCTATCCTCAGTTAGCGCAAAATAGGCCAGAGCTTTTGCTACTGGCCCGTGCGCATCAGGCGTCGTGCGAGCAGATTGCGTAGCCTGGCGTCGGCGCTTTCGCGCCCGGCATTTTTCGGCATATTAAGATCAGAAGGAGAAGGTGCCGGGACATATTTATCCACGAAAGCAATGAGCTCATTGACCGTTAGCACCCGTTCGGCAATGTGCGCGACATCCGGCCAGTAATTTTCTTTCGCCTGATACATCAACCACATCGCCTGCAGATAGTCGTCGCGGTTGAGCGCGAGTATCGCCTGCTCGGCGTGAATACGGCAGACCGGCGTCACAAACTCCTCGCTGATAATGTCATCACTAGACTGCTGGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 826860-827071 **** Predicted by CRISPRDetect 2.4 *** >NZ_QIXC01000001.1 Klebsiella variicola strain WUSM_KV_46 NODE_1_length_955242_cov_19.9051, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 826860 28 100.0 33 ............................ TTCAGCATCATCTAGCAGGCGCATATACGTGAC 826921 28 100.0 33 ............................ TGTTAAGCATGGTTTTGTCAGAGTATATGGACT 826982 28 89.3 33 ...........G..T..........G.. TAAAAAAGAAAAACTCTCCGCTTCCCTGTTCGG 827043 28 85.7 0 ............C.T......C.....T | C [827064] ========== ====== ====== ====== ============================ ================================= ================== 4 28 93.8 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TCAGCGTTGGCCAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGTCTCGACGGCGCAGCGCAGGATAATAGCCTCCAGCTCCCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTACGCGAAGCCACGGAAGGCAAGCATCAGTACGTCGCGCTACGTTCTGGGTATGACAAAAGCGTTTTGCGCCTGGCTGCGGGGCGGGCAGGCCAGTAGGGTATATCGGTCCTGGTCAGCAGCAAGTCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATAAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTATCGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGTTTGATAAGGAAATTAAAATGAAAAGAGCCGAATTAGACGTTGTGGTTTTAGGTGAGGATTTACCGAATGAAGGGCTGGTAAAAGGAACGCTTGGTACGATTGTGATGGTTTTTAATACGCCAACAACTGGCTATCTGGTCGAGTTTTGCGACGAGAAAGGAAAAACAATCGCAATGCCAGTTTTATTCCCCGCCCAGCTAAAGCGCTATTTCACGATTGGTAACCTGAAGTCGCTGATGGTGGAAGGTAATTATCCCGTAGCCGACCCTGTAGACCCAGATGTCATGGCAGATTTAATGCACAAAGTCGCGCCTGTTGAATGGGAGGACAAGAAAAGAAGGGTCTATGAGGATATTCAACGACTATTGATTAGTCGGCCGGACTACGCGGATATGTTCAATATTATGGATGGAGGTGAGTACAATGGCATGACATTGTACAGCCTGGTGCAGGCAGAGAACGGTGAACCTGCATGGTCGAATATCTTTGTTCGAAA # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //