Array 1 1494558-1495743 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013685.1 Salmonella enterica subsp. enterica serovar Newport strain 0007-33 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1494558 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 1494619 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 1494680 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 1494741 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 1494802 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 1494863 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 1494924 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 1494985 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 1495046 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 1495107 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 1495168 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 1495229 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 1495290 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 1495351 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 1495412 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 1495473 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 1495534 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 1495595 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 1495656 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 1495716 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1512413-1513967 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013685.1 Salmonella enterica subsp. enterica serovar Newport strain 0007-33 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1512413 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 1512474 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 1512535 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 1512596 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 1512657 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 1512718 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 1512779 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 1512840 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 1512901 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 1512962 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 1513023 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 1513084 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 1513145 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 1513206 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 1513267 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 1513328 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 1513389 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 1513450 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 1513511 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 1513572 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 1513633 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 1513694 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 1513755 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 1513816 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 1513877 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 1513938 29 100.0 0 ............................. | A [1513965] ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //