Array 1 465842-468052 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016757.1 Cloacibacillus porcorum strain CL-84 (T) chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 465842 31 100.0 33 ............................... GATTGACACGCTGGAACGTGTAGCTTTTAAGGT 465906 31 100.0 33 ............................... CAAATAGACACGATTATGTCCCGCACAGCCCCG 465970 31 100.0 34 ............................... GATTAAGACACCCACATGATTTTGTTCGCCCTCC 466035 31 100.0 33 ............................... GTGCCTTGGTTGGCAACGGCACCAATATCACGC 466099 31 100.0 34 ............................... ACCTACTGTAAGGTCAAGAAACATCAGCCCGAAT 466164 31 100.0 32 ............................... TTCGCCTCCTTTACTCCTTTACTCCCTTAACC 466227 31 100.0 33 ............................... CAACGATGGACGTGGAAAACGTCGTCGATGCGG 466291 31 100.0 32 ............................... TACTTCCATAATTGCCCTAAAGACCAGGTAAA 466354 31 100.0 34 ............................... TTTTTTAGATAAGTCGATAGAAAATGTTGCTCTG 466419 31 100.0 33 ............................... AAATGTAATCAATATTTGGTGTTCTTTTTTGTT 466483 31 100.0 32 ............................... CGTGTCCCTTCTGCGGGCACATGCAGTATCTC 466546 31 100.0 33 ............................... CTTCATTCGTCGTTTTTGCCTGCGACTGTCCGC 466610 31 100.0 33 ............................... TGGTGATAGAGGACCAAATATCTTTAATGCTCT 466674 31 100.0 34 ............................... CTTTTTAGTTACTATATCAGGTAATGATGCTAAC 466739 31 100.0 33 ............................... CTTGGTTAAAGGGCTGTAGCCCAGAACCGTTGA 466803 31 100.0 34 ............................... ATGTATTCGGAGCTCTTTGCCGCAGCAATCGCAG 466868 31 100.0 34 ............................... TGTCTTTACAAAAGAGATATTGAAATCGTATTTC 466933 31 100.0 32 ............................... CGCATATTCATGATACTGACCGATCATGAGCG 466996 31 100.0 33 ............................... ACTTGGAGCTTCGCTAGATTTTTCATTGCTTGC 467060 31 100.0 33 ............................... AATTACCATAGATGACAGCGGCACTATCGGATT 467124 31 100.0 33 ............................... ATAGATTGCCAAAGGTCGGCAATCGTATCGTTG 467188 31 100.0 33 ............................... CGATCAGTCCGTTTACATCGATAAAGACTTTTG 467252 31 100.0 33 ............................... TTTTCCGCCTTAAATTTATAGCCCATGTACTTA 467316 31 100.0 34 ............................... TGGAGTACGTGGTCGGCTGTCATATCGGCATAGC 467381 31 100.0 34 ............................... ATATCCGCCTTATATAGAATTGTTCGCACGGGAA 467446 31 100.0 33 ............................... GTTCCGCAAGAACGTCAATTTCACGACATGAGG 467510 31 100.0 33 ............................... CTGCTGCGCCTGGGCCTGTGCGCGCTGCTTCCG 467574 31 100.0 33 ............................... AGCACCCCGGCACGCTTACATTAGAGGCGCATA 467638 31 100.0 33 ............................... CTCCTGGGACGATTTATGCGGAGCAGCGCGGCG 467702 31 100.0 34 ............................... CGCAGATTATGTCTCCGTATATCCCATAGGGGGC 467767 31 100.0 33 ............................... GCTATCAGCTGGACGGGGACAGGAGGGGCACAA 467831 31 100.0 33 ............................... ATGTGACGGGGATCTCGCTCGACAAAGAAATAT 467895 31 100.0 33 ............................... TCCATGCCACAGTCGACCTCAATCAGCGCGTCA 467959 31 100.0 33 ............................... CATACGTTGCCGGGCGCAAACCATTGCCCGACA 468023 30 90.3 0 ...........G..T......-......... | ========== ====== ====== ====== =============================== ================================== ================== 35 31 99.7 33 GTCACGCCCTCACGGGCGTGCTAGTTGAAAC # Left flank : ATATATCTGGAAGTAGGGATGAGAGATGCTTGTTGTGGTAAGCTATGACGTCAATGTCAGCAGTGAAGGCGGTGCGAAGCGTCTACGGAAAATCGCCAAACTCTGCGAAAACCATGGGCAGAGAGTCCAGTTCTCTGTCTTTGAATGTTTGGTTGACCCGGTACAATGGTCCGAGTTAAAATTTCAGTTAGAGAAGAGCATTGATAATCAGAAAGATAGCCTGAGATACTACTTTTTGGGAGCAAACTGGCAAAGAAGAGTAGAACATGTCGGAGCGAAAGAACCATATGATCCTCAAGGATTACTTTTGCTGTAACATGTATATTTGTGTGTGCGCGAACCCCAAGCATCCGAAAAAATGTTAGAGGGTTCGCGCCCTTGTCTATATCTGGCTTATACAAAGTTTATTTAAAAAACGTACCATGAAAAAGCGGACGAAAAGATGCGTTCGCGCAATAAGGGAAATTTCTGTTAGAATGAGTGCCTTTAGAAGCACTGCC # Right flank : CTCCCGCATATCTGTACGCGAATATGGAAGCATCAAGCGATAATAACATACATACCGTCTTTGCCCTATGCCTCCTGCACCGCGCCCTTCATTGACATTGCTATCAGGTGCGAGCGGACGAAGCCGTAGCTGCGCAGGTCGTCGAGGAAGCGGTGCATACGTTCTTTCGAGGAGAAAGCCGCTTCGATGAGGAAGTCCAGCTCGCCGTAGATCTACCAGAAGTGGATGACGTCGGAGGATGAGCGCAAAATGGGGATGAGGATGTCGTTGGGCTTTTTATCGTATTTCTGGCCGCTGTTGAATTTGAAGCTTATCATCACGTGGAGCGCGCGGCCCAGCGCGTCGGTGTCTATCTCCGCTTTGTAGCCGGTGATGACGCCGCTTTCTTCCAGGCGCAGTATTCTTTCGCGCACCGCGGGACGCGTCATGCCGACCGTTTCGCCGATCTCTTTGTATGTCTTTCTCGCGTCCTGCTGAAGCTCCCGCAGAATCTTCCAGTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCCCTCACGGGCGTGCTAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACGCCCTCACGGGCGTGCTAGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1337994-1339674 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016757.1 Cloacibacillus porcorum strain CL-84 (T) chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 1337994 31 100.0 35 ............................... GTCGAGGACGGCATCCAGCGGCAGCTCGACAAGGC 1338060 31 100.0 37 ............................... GTGCCGTTACCGCCGTACTTGGTGCCTATTACTGCGC 1338128 31 100.0 38 ............................... GCTTACATAAAGAGCGTAGCCAACATCGACGTCTCCGC 1338197 31 100.0 35 ............................... TTTATACTTTGGCCACCGTTCGGACTCGCGTAGGC 1338263 31 100.0 38 ............................... GCTTACATAAAGAGCGTAGCCAACATCGACGTCTCCGC 1338332 31 100.0 36 ............................... AATGATGATGTAATTGTAATGCCCTGTTTGTTCCGC 1338399 31 100.0 37 ............................... GATCTTGACCCGCAGGGCAACCTCACGGCGGCAACGC 1338467 31 100.0 35 ............................... TTTATACTTTGGCCACCGTTCGGACTCGCGTAGGC 1338533 31 100.0 38 ............................... AGCTTTATACGTGGATGAACTTAATCGCTGCTCGAAGC 1338602 31 96.8 37 ...............A............... GACGATGATGTTATCTTTGTCGTAGGTGACGACTCGC 1338670 31 100.0 35 ............................... TTGGCTAAAACAGGCGGGCACTGTGCGTATTGCGC 1338736 31 100.0 35 ............................... GCCTCGTCCCATTCGCTTTGCATGTCGGTCGGCGT 1338802 31 100.0 37 ............................... CTGTAATGGGCAAGCAAGGCGCGGAATGGAAGCTGGT 1338870 31 100.0 36 ............................... TCACGTGCCAGGTGGCCCGCCTCACGTGCCTCGTGT 1338937 31 100.0 37 ............................... CGCATTGCGGAAGCCACGACGCGCTTGCCGAGTACGT 1339005 31 100.0 38 ............................... CCCTGCACATCGAATGCGGTACCAGGTGCGATAAACGT 1339074 31 100.0 35 ............................... TCTTTGCCGAAGTCTCCTTTGTGTTCGCGCAGAGT 1339140 31 100.0 37 ............................... ACATATCCCTATGGCGACGTGATCCATCTGCGGCGGC 1339208 31 100.0 36 ............................... ATAGCCGCCGCCTTTTACTGCCGCCGCGCCAAACGC 1339275 31 100.0 37 ............................... GAAAGATGACCCTGCATCTTTAAACGGCAGCGCCCGC 1339343 31 100.0 35 ............................... TTGATACGCTGCGGCTCGGATTATATCCCTTCGGT 1339409 31 100.0 36 ............................... GTTTATGGACGGATTTGCGGAAGATGGCGTGACGGT 1339476 31 96.8 36 ..........A.................... CGCAATGCCTTATCAAGCCCCTGAACCTGCGCATGT 1339543 31 96.8 35 ..........A.................... TCGACGATAACGCCCTTGTTGTTTACGCGGCAGGC 1339609 31 96.8 3 ................T.............. AGT Deletion [1339643] 1339643 31 77.4 0 TT.TGT...A....................A | T [1339661] ========== ====== ====== ====== =============================== ====================================== ================== 26 31 98.6 35 CACGAGCTTCGCGCTTCGTGTGGATTAAAAT # Left flank : TATACCCCATTTTATTGGAAATGACAGGAACGAGGTATTGCCATGCTTCTTCTAATAACTTATGATGTAAATACTAGTACGCCTGAAGGCAGGAGACGCTTGCGTAGGGTTGCAAGAATCTGCGAAAACTATGGGCAAAGGGTACAAAATTCTGTTTTTGAGTGTTTAGTTGATCAGGCTCAGAGGTTGGAGTTATGCCATGAACTGGAAAAAGTAATAGATATAAAAAAAGACAGCCTGCGGTACTATCAACTTGGAAATCATTGGAAAAACAGAGTTGAACATGTTGGCACAAAGGATACCTTTGATCCGGAAGGCGTCCTCATTTTATAGCGCGAACCTCAAGTGGACATGAATTTACCGGGAGGTTCGCGTTGTTGATTTTACAACGGAATAGCTAGTTTTTTAGATAAAATCCATTAGCTTTTAGTAGAATTTCGCCAAGTCCGCGTTTAGCATCGAGTAAAGTATTGATATAAGTATATAGATTCTATATACAC # Right flank : ATGTAGGAGTATTCTGTAATGTATCCTACGAAGCTCTAAATAATAGCAATCATCGCGTTTTAGTGACTTAAAATTATAGGATGTGGAGTTATTTTTCATAATTGTTACGCTATTAGGCGTCCCATCTTTGTCCTGTCGGGCAGAGGGGCGTCCTTTATTGTGTGTGCGGCTTCAATAAAGGCCGTCATCGACTCCGTCATATATTTATTTTTGTGGTGGACGAGAGAAAAGGTCCGGTCCCATTCGCCGTCGGCGCAGCAAATCGCGCGGATATTTCCGGCGTCGAGGTGGGGGATCAGCAGGCGGACGGAGGCGACGCCGATGCAGCCCTCTTCCCGCACGGCCCGCAGCGTCGAGTCAAAGCAGGCCACCTCCCATTTTATCCTGAGCTTTCTCTTCTGTTCGGTGATGAAATTCTCGAATATCTCACGCGTTCCGCTGCCATGTTCGCGCATTACGAAGCTTTCACGGCAGAGTTCGTCAAGGCTGATATATTTTTT # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CACGAGCTTCGCGCTTCGTGTGGATTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.61%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 2418095-2417862 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016757.1 Cloacibacillus porcorum strain CL-84 (T) chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2418094 36 100.0 30 .................................... GTAAAACTGTCGATTATCTTCCTTGGCGCC 2418028 36 100.0 30 .................................... AACCCTGACGGTGGAGATACTTTTATGAAC 2417962 36 97.2 30 ....................A............... ACAGGAGGCGGCAGAATATATTGCCTCCTG 2417896 35 88.9 0 .............A...........C......-.G. | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 96.5 30 ATTATAGCATTTCGGAGTGTGACAGAGGGCTATAAC # Left flank : TCACAGAAAGGATTTGAATACTGCGACAGAGACTCTTCGCTCTTGAACGTGACTATGCAAAACTGATGCCTGAAGAGCAATGGCTGGTGACAACGACGAATCCTGTGACCTTGCTTCCTATGCTGGACTCAACGACTCTGCAGACTAATAATACAATGGATCTGCTTATTGGCGTAGGTACGGTTGTTTTGACGCTTACGAAAGTTCCTCATCTCCGACGGTTATGACATGCTTCAGCTTTCCGTCTATTGCAGGATCGTAAACGGGCAAGACTCTGCGGACAAACATTTAGAACGACTGAAAAAAGAATTGCCCGAAAAGGACTCCGTGAGATTTTTGCAGATAACAGACAGGCAATATGCCGCGATGAAACCGCTGCTCGGAGTAAAAACGAAAAAAGAAAAATTCGTAGATTCCCGCCAAACATTACTCTTTTAACAAAAAAAATAAACGTCCGGATCCTTACCAAACAAGTACTGGCAAGGATCCGGGCGCTGCGT # Right flank : ACGGATGACATCTCTGTCTCCGGTGCCGGACTCAACGACTCTGCAGACTGATAATACAATAGATCTGATTATTGGCGTAGGTACGGTATATTTGACGCTTACGTTGTTTTGACGCTTACGATATTTTTATAGAAGCCCTGCCGAAATATGTACGTAAGTCGCTAGGGATTATCTGCCTAAAATATAACGTCGTGTATTTTCTTACCAGGCATACAGGGTGTTTGCGTATCTTGAAAAGCGACATTTTTGCAACTTCTCCTTTTGTCCGTATAACTTGTACATTGGTCAAATAGGGGAATTTTAGAGGAGGCTAAAATAAAAAATCCCTTGCAATAGCAAGGGACAATACAACATATGGAGGCGGCACCCAGACTCGAACTGGGGATAAAGGATTTGCAGTCCTCTGCCTTACCACTTGGCTATGCCGCCGTAACGAGAGAAAGTATAACAATCATAACCTGTGGTGTCAAGGAAACCATGGGTAAATTTGTACTGATTTC # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATAGCATTTCGGAGTGTGACAGAGGGCTATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 4 3112852-3112360 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016757.1 Cloacibacillus porcorum strain CL-84 (T) chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 3112851 32 100.0 33 ................................ ACGGCGCTCTCAGTCAGACGCGCCCCCTCGCTC 3112786 32 100.0 33 ................................ CTACGGAGCTGATAGAAAACACCGGCAAGCCCT 3112721 32 100.0 33 ................................ TAATGACGATCGACGACGAGGAGCAATCTATAG 3112656 32 100.0 32 ................................ TGGTCGTGAGCGGCTATCACATTGGCGTGCGC 3112592 32 100.0 35 ................................ GTGTCGAACCTCGGCATCCGCAGCGACGGGCAGAC 3112525 32 100.0 35 ................................ CCATATACGCCGTACATTTTCGACACAGGCGTTCA 3112458 32 96.9 33 ..........C..................... TGGCAGGGCGTCGTTCGACAAGAGCCGCCTGAA 3112393 31 81.2 0 ..........C.........C..CA..-..T. | T,TG [3112373,3112376] ========== ====== ====== ====== ================================ =================================== ================== 8 32 97.3 34 GTCGTGCCCTTCGCGGGCACGGTAGTTGAAAC # Left flank : GCCCATAATCAGCATGGAAGAACTGGCGGCGAGGGCGAAGAAAATGTCCGGCCCGACCGATCCCGTGGCGACCACGGACCGGATAATAGGAGTAGTCGAGTGGAGAGACGGCACCGTTATCGACGTCGTCAGACAGCTTAAAAAGTAAACAGCGTACAAGCGGCAGTTAAATAGAAAAAAGGGCAGAGGCGTCGCCGTGGGGCGGGGCCTTTGTCTTTTATACGGGCCAGTGTTAAGATAAGAAAAAATAGGCCGCAGTATCAACGGCTACGCTACGCGACATGAAACGTGATACGCACAAAATTATACTGAAAAGGAAGACATGTCTGCCAGCGCGAAGCTGAAGCGCGCATGATTTTTATAGGAACTTCGCGCCGCGCCGTGTGCCTGTATTCGGCGAATATTTCTTACAAACAGAGAACCATGTAAATGCGGAGATCGCACACTTCGCGCAATATGGGGAAAAATATGTTAGTATTACCATATAAAACAGTTATTCC # Right flank : TGCTTTAAACGGCACCAGCGGCGCGCCGACGGGGGTGTAGAGGACATATTTGGGAGAGCCGTCCTCGTTTTGAGAGGCGCAGACCAGGGGTTTCTTTGAACTCCGCAGGAGCGCGGCGGTCTCTTTCAGCCGCTGGCGCTCATCCGGCTCTTTGTGCTCTCCCCAGCCGCAGTATACCTTGGTGACGCGTGGATTTTTCAGCGCCGCCGCGACGAAGTCCAGGTTGTTCTTCAAGGTCATCAGTCGGCGGTAATATTCGCCGCCGGTATTGATGTCGCCCGCGGTGAATATTTGCAGATAGGCCATATTGTCTCCCGCCGCTCCCGGCTCCGAGAGCAGCCGCTCATTCCCCGTGCTGCGCAGCGCCCAGATATCGGTGATTATCATGCCGCCGAAGCCGTGTCTTTCTGCGATATCAAGGCACCTTCTTGTGGAGTTGTCGTCGTAGGCGGCGTTGGCGGAGCTGGGGTTCATGAGAACGAAGAGTAGGAGCGGGGAAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTGCCCTTCGCGGGCACGGTAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTGCCCTTCGCGGGCACGGTAGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //