Array 1 9546-11226 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUGY01000023.1 Ruminococcus sp. AF17-12 AF17-12.Scaf23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 9546 36 97.2 37 ...................................T CTGATTCGCAGCTCTGCCTCTGTTTTAGTGTTCCCGG 9619 36 97.2 37 ...................................T TATTCAGATAGATATATTTGCCCTTATGGTCTTTCCC 9692 36 97.2 35 ...................................T CGCTTGTCTTGCGTTTTGCAAGTTCCTTTTTAGCC 9763 36 100.0 40 .................................... TTTAGAAAAGTTTTTACAATCGTTATGTATTTCGTTTACT 9839 36 100.0 34 .................................... CACATAACGCCATTATAACCACACTTACAATCTC 9909 36 100.0 34 .................................... TTAATTCTCCGGCGTATTTGATACTTTTGGGAAG 9979 36 100.0 35 .................................... TTTGTTTTCCTCCTATTTTAAGTTGTGTTTTTTGT 10050 36 100.0 34 .................................... GCTGAGTACGATTGCTACTATCGACCAGTCTACT 10120 36 100.0 32 .................................... GATTTTAAATTTCGGGTGTGGTGTGAGTGTAC 10188 36 100.0 33 .................................... TTTCTTATAGTTTTCAACGCTCAGCTTTTTCAA 10257 36 100.0 37 .................................... ATGATTTTCTCGATATCGGAAAGTGAGCGCTTTACTG 10330 36 100.0 39 .................................... CACGACTTGTTTTTATGTATCATTGATAGAAAACAAGTA 10405 36 100.0 34 .................................... AATAACCTGTCACCGCTTCAGTTCCAAAATTATC 10475 36 100.0 40 .................................... GTAATAATATATTTTTTCATAATTTATTTCCTTTCTGGAA 10551 36 100.0 35 .................................... CCTTTTTGTCAAGTTTGAAAGTCGGAACTGTAATT 10622 36 100.0 37 .................................... ATTTTGAAACTTTAAGAATTAGATTTCAGACAGTATC 10695 36 100.0 34 .................................... TCCTGCACAGAAATACAGGTGATTTCATTTCCAT 10765 36 100.0 33 .................................... TGTATATTCGGACTTGGTGAATTTCTTGCCACC 10834 36 100.0 40 .................................... TTTGCACTCATATGCTTCCGGGTCATCGTAGTCCTTCTCA 10910 36 100.0 34 .................................... TCAGTTACGAATCCGGTCAATGTTGCTCTGTTTA 10980 36 100.0 35 .................................... GTGTCTGATAATTAATGCTATAATCACAACACATA 11051 36 94.4 32 ......................T..A.......... TTTTTTTGTTTTGCATTAAACATTTGTTTATT 11119 36 94.4 36 ...................T..........A..... TCTACAAACTTATCACCAAGTGCTTTCACCATGTCC 11191 36 88.9 0 ............GA.................A...T | ========== ====== ====== ====== ==================================== ======================================== ================== 24 36 98.7 36 ATTGAGAAATGTAGTTCCCCGACAGGGGACGGAAAC # Left flank : AATGTAATCTAAAAATTGAGGATATTTTGGATGCAGTAAAATTGTTTTATGAGCAGTATTATCAGGTGTTCCAGAGTAAATTTCCGAGATGTGACAGAGGTAAACCTAATACAGTATTTTTTGGTGGTGGAAGTGGTTTTGTTTCAAAAACGGTTGTTTATCCTATGTTTGGTGAAAGAGAAGGTATTGAAATAACAAAAGATATCTTTGACAGAACAGGTGTGCCACAAGATCATAAACATTATAAAGATACAAGAATGAGGGTTTCACCACATATTTTGAAATGTACCCGCTATCAGGGAAAAGAATATATGATGGGACAATGTGAAATTGATATTTCTTAATAAAAGAGAATATCTGTTTGGATTTTGCCGCGCATGGCTTAAATACTGAGTTTGCTGCCGATTTAAGCGAATGAATTTTATTTATTTTTCCAAAAATATTTTTCCCACGCAATCCCGACCATGAGCCCAGACTGGTGGCGGGATTGTAGGGATGGT # Right flank : TATCTATCCATTTATTCGAGCACAGAATAATAAACTTTATTGATAATATGTAATATACGGAGGTGAAAAATGGGATTTTTGTATGTGAATGAAAATGGAGCGACTATCGGAGTTGAAGCAAATCAGTGTACTGTGAATTATAAGGACGGTATGAAACGTCTTATTCCAATTGAATCTTTAGATGGAATTACGATCATGGGGCGTTCACAAATGACAACTCAGTGTGCGGAAGAATGTATGAGCAGAGGGATTCCGGTAAGCTATTTTTCGAAGGGTGGAAAATATTTTGGCCGGTTGATATCAACAGGACATGTTAATGTGTCAAGACAGAGAAAACAAAGTGCTCTTTATGATACAGAATTTGCTGCAACGCTTGCTATGAAGATTCTTTGTGCAAAGATTAAAAATCAAAGTGTAGTATTACGTCGATATGAAAAAAGCAGAGGGATTAACCTGGAAGAAGAGCAAAAAATGCTGACAATCTGTAAAAATAAGATCAT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAGAAATGTAGTTCCCCGACAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 166413-167687 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUGY01000004.1 Ruminococcus sp. AF17-12 AF17-12.Scaf4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 166413 32 100.0 33 ................................ TAAAAACTTCCATGTGTTATCTGCCATCAATAC 166478 32 100.0 33 ................................ AAAATAACGGGGTACAAATCAAAAAAACGGAAT 166543 32 100.0 32 ................................ TTACAAAAGCTGCTGCCTCCTGCGATATGTCG 166607 32 100.0 34 ................................ TGCCATTCTGGTTCCTCCTTATGTTCTGATTTCC 166673 32 100.0 34 ................................ AAAACAGAAGAGGACAAGCAGCTCTACGAAGAAC 166739 32 100.0 33 ................................ AAGATACAAGGCGGCTGCCTCCTCGTAAAAATC 166804 32 100.0 33 ................................ CTCAACAATGGTATAGGTTCCTACTGGAATATA 166869 32 100.0 33 ................................ GGATATGCTTTACCGCAACCAGCCAGCATAGAT 166934 32 100.0 34 ................................ CGGCAAGGGGAAAGGAAGATCAAATAAGGACCTC 167000 32 100.0 33 ................................ CGCTTACTCCACGAGTTACAGTATACTGCCACC 167065 32 100.0 34 ................................ TATCACAGGTCAGCAGAAAAGTTGTGGTACATGT 167131 32 96.9 34 .............................G.. CATAGTAAATGGTATTTGTAATAGGGCTAACACC 167197 32 96.9 34 ...................A............ TCTGTCTTTGCGGTGATCTCGTGCGGATCCGGAA 167263 32 100.0 33 ................................ GGAAAAGAAGCAATGTCTGGGATGCTTGCTATC 167328 32 100.0 34 ................................ CTGGATATGACCTTAATTTTTTTTCGCATTTCGT 167394 32 87.5 34 .........T...CA....T............ CCCGATCACATATGCGATCACTGTAGCTCCAGCC 167460 32 93.8 33 .........T...C.................. GCAAAGTAGTTAGCTGCATTCTGGTAATATGCC 167525 32 90.6 34 ............ACA................. GAGTGTAGAAGATAGTGATAGCCTGGTTGATGAT 167591 32 100.0 33 ................................ ATCAACGCAAAGAGATTCGTGGAGATTGAAAGG 167656 32 93.8 0 .............T.........A........ | ========== ====== ====== ====== ================================ ================================== ================== 20 32 98.0 33 GTCGTTCCCCACGAGGGAACGTGGATTGAAAT # Left flank : AGGAGATTTGGACAGTTATCCAGTGTTTTTGTGGAAATGAGGTGACAAAGTGTTGGTAGTGATTACTTATGATGTAAATACAGAGACAACTGCAGGAAGAACTCGTTTGCGTAAAGTGGCGAAGCAATGTACAAATTATGGAAGAAGGGTGCAAAATTCTGTATTTGAGTGTATTTTGGATAGCGCTCAAAGTGTTGCTTTGAAGGGGATATTGTCTGATATTATTGACAAAAATAAAGATAGCTTACGTTTTTATTACCTCGGAAATAATTATCAGACTAAAATAGAACATGTAGGTATAGAACGTGGAATTCCAGTAGATCAACCTTTAATTATGTAGGTGCGAATCAGAAGTACACATAAAATGCCGGCAGGATTCGCACTACAAAAATCAGAAAAGTAACATGAATAACACTAAAGAAAAGAGAGAAGGGATAATAAAAAGTAGAAAAATTATATTTATTGCATAAAAAAACAAAGAATATTTGTGAAAATTTGCC # Right flank : TAACAAAGAGGAAATCAAACGGTGTGGTACATGGGACATTCCCTATGCGGGGACAAAAACCGGAAATCGCAATTAATACTTGCATTTAACAGACATTGGTGTTACAATGAACGAAACTAAGAACTTGTTGGCATAGGAGTGGGCGAGAGCCCGCTCCTATTTGCTGAGAAGGAATTTGTTCAGAAATAGGCAGAAATAGGAAAGGCAGGTGGGAAGCATGAGCAGACGGGAAGAATATGAACAGAAGACAGAGGCGATCCTTACACCAATCGTGGAGTCCAGGGGCTTTGAGCTGGTAGACGTGGAGTATGTCAAGGAAGCCGGAACCTGGTATCTCAGAGGCTATATCGACAAGCCGGGCGGAATCACAGTCAATGACTGCGAGGACGTAAGCCGTGCATTCAGCGATATACTGGATGAGCAGGATTTCATCGAGGACAGCTACATTATGGAGATCAGTTCTCCGGGACTTGACCGGCCTCTTAAAAAAGAAAAAGACT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTTCCCCACGAGGGAACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 1 37751-37387 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUGY01000014.1 Ruminococcus sp. AF17-12 AF17-12.Scaf14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 37750 36 100.0 30 .................................... TCTATCTGTGCTTGGCAACGGAGGTGTTGC 37684 36 100.0 30 .................................... ACTGTTATCAATCGTTCCTGCTCATGGCTG 37618 36 100.0 28 .................................... TACACCGGCACCGACATCAACCATGCCT 37554 36 100.0 30 .................................... AATGGAATGTCTGGGTACCATTACTAAATC 37488 36 100.0 30 .................................... AGAGGAAAAAGAGGGGTCTCCCGAACGCAA 37422 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTTGAATACTATACGTTTTTACATCATTCTCAAAC # Left flank : ATTCCATTTATGGAATCTCCTCCTGTGCTATTATTTTTAATTTTTCTCTGAGTTTCATGTTTGTCACCTCCTTTTTTATTTGGCAAAATTAAAAGAACACATCTATTGTAACATATATTTTCATATAAAAACGGTCACATATGAACATGCATCATTGATTTCTTTGCCGTCAAAACAAACTTTTTTTAGGCTTATTAAAGCAAAAAGGACCAATCTCTCTCGACTGACCCTCAATTAGTTCGACAAACCCTCAAAACTCTGATCATTCAAAAAGCCACCATATGACAAATGACTCTTCATCTGCCATACAGCGGCTTCTTCTTTATTTTATACATTCTCTTCTTTCAAATCCTACTCTTGCATTTAAAACACTAAACTTATATCCCGAATCTATCAATACTCAAACTAATTCCCCTTAACTCAATATTAAATAAATCACAAATAATATTAATCCATATACTAATAATTGCCCTAAAATGTACATAACACTACTCCTATTA # Right flank : CTCAAATTCAAAAATGAAGCGCCTCATCTGCGCTTATCGTATGATATTCAAACCTTGAAAAGTAATAAATTCACATTTATATTATCAATTATAAAATATCTTTTATCTTTTGAGAAGTCTCTTTGTGTATTTTCAATATTTTTATTCTCAAACCAACCCCAACACCTTCAACGCATTACTCTCCGTCACAGCCACAACCTCCTCGCAGCTGATTCCCTTAATCTCCGCAATGGTCTTCACAACCTCCGGCAGATACAGGGAGCTGTTTTTCTTTCCACGGTTCGGCACAGGTGCCATGTAGGGGCAGTCGGTTTCAAGCAGGATCTGATTCAACGGTGCATACTCTGCCACTTCCTTCAGCTTCCGAGAATTCTTAAAAGTAACCACTCCGCCGATTCCAAGATAAAGTCCCATATTCAGATACTCCCTTGCAATCTCCTTACTATAGGAAAAACAATGGATAACTCCGCCATACATCCCATCCTGCATATATTCTTTCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATACTATACGTTTTTACATCATTCTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 44837-45268 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUGY01000014.1 Ruminococcus sp. AF17-12 AF17-12.Scaf14, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 44837 36 100.0 30 .................................... GATTGAAACTGCAGTGAAAATCCACACGGT 44903 36 100.0 29 .................................... TGGCATCACTGCGGATCCTGCCTTGATTC 44968 36 100.0 30 .................................... ACCGTCATGTACGGCACACAGGATATCACG 45034 36 100.0 30 .................................... AATGTATCAACTACGGTATCCCTCGCATTA 45100 36 100.0 30 .................................... TGCAGTAACCAGAATTGTTGAATTGCAGCA 45166 36 100.0 31 .................................... GAGGTGTCACGAGTACGAAGCGCGAGTTATC 45233 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 7 36 100.0 32 GTTTGAGAATGATGTAAAAACGTATAGTATTCAAAC # Left flank : GATTCAGAAAAAATTGTATTTACAGCTTCAGAAAACAGCATATGGAGAAGAGATGTTCATAGATACGCAGAAGCTGAATGCTGATTTACAAAGTTATATTTTTCGTCTGGAAAGTATTTGTGGGTATGATATTGAAATAGACACAGCTATGGATGTTCAACAGTTGTTTAAGGCATTGGGAGTAAAGATGGAAGGAGGAGAGTATGATTTTTCTGAAAAGCTTGCACAGTATATGAAACTTATGTCAGAGCTAATGGGAAAGAAAGTGCTTGTTTTTATAAATATAAGATCTTATCTTGAAAATGAACAGATTCAGGAATTGATAAAAAATGCTGTATATAATGAAATTTCATTATTATTTATTGAAAATATACAAAGAGACTTTTCAGAAATGAAAAAATATTATATAATTGACAAAGATGGATGTGAAGTCTATTGATTAAAATAGGTTGAATACTATAATGTATGTGCGTGTGAGGCACTTCATTTTTGAATTTGAG # Right flank : CAAAAAAGAGGCCCTGTATGTTGTGAGAATGTGATCCTTACAGAAAAATATGCAGGTAAAAAAATGCCTGACAGAAATGTCTGTCAGGCACCGGAAGCATAAAACAGGGGATCCGGAAATCCAGGATTGTATTGTACAGCTTTTACAGTGATTTCAGCACTTTAACAAGCCGTGAATTATCCTCCGGCATCATAATACAGAATCGTACAAATTCCCCGTCCAGGCACTGGAAGGAAGAACAGTCACGGATCATCATGCCTTGTCTGATGCAGGCTTCAAATACGTCATAGGAGGTCAGTCCGTTTTTCAGGATCCGGAGCAGGATAAAGTTTGCATAGGCGGGATAGATTTTGTAGGTATCTGTATCCTTCAGCTCCCGGATCATCCGGTCGCGTTCGGAAAGGATCAGATTTCTGGTTTCTTTAATATAATCTTCATCCTGCAGCATGATCTCTCCTGCAAAGGCACCAAGGCTGTTAAGTGACCATGGTGTCTGTTTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAATGATGTAAAAACGTATAGTATTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //