Array 1 842455-843442 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015561.1 Pasteurella multocida strain USDA-ARS-USMARC-60213 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 842455 28 100.0 32 ............................ CGTCGATTCGATAGGTCGCCACCGTACTGATA 842515 28 100.0 32 ............................ TTCCGATTTTTGATAGTCAAAGACTACTGAGT 842575 28 100.0 32 ............................ AAACGGTCGTGCGTCGTTCGGGTTGTGATCTT 842635 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 842695 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 842755 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 842815 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 842875 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 842935 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 842995 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 843055 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 843115 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 843175 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 843235 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 843295 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 843355 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 843415 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 17 28 99.6 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2071136-2068047 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015561.1 Pasteurella multocida strain USDA-ARS-USMARC-60213 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2071135 28 100.0 32 ............................ AGTCAACTCAAAGTCAACTAATAGTCATCGTT 2071075 28 100.0 32 ............................ TGTTGTTTGTTGTGTTGATACGTAGTGTTAAC 2071015 28 100.0 32 ............................ TCACAGAATCTATATCGCAGTGCAGTCAAGAT 2070955 28 100.0 32 ............................ ACTGGTAGCGCGCCAATACTCTGTATTTTTCT 2070895 28 100.0 32 ............................ TCCATAAGGTCGCTTGTCGCAACCATTATTCT 2070835 28 100.0 32 ............................ TTATCCGTCACCTTCACCATGTCGTAATGCAC 2070775 28 100.0 32 ............................ GTCGGAGCTTAGGACGGGGGAGAGTATCGTGT 2070715 28 100.0 32 ............................ TTTTGAATGCTCATCACGCATTTGTTGCAACC 2070655 28 100.0 32 ............................ ATGACTGCCGCGCTTGATAATTGCAACAGCAA 2070595 28 100.0 32 ............................ TTCGTCCGTAGTTACAAACAGCATAGCTCTGA 2070535 28 100.0 32 ............................ TCTATATATTGTTTTTCATTGGGCTTGGTCGG 2070475 28 100.0 32 ............................ TCCAAGCGCGAGGAGGGATAACCATAGGCATA 2070415 28 100.0 32 ............................ AACAGCTCACCTTGGGGAACCACCTGAAAAAC 2070355 28 100.0 32 ............................ ATATCCTCACCGCTATAATGTGGTAAATCTAA 2070295 28 100.0 32 ............................ ACTACGGGAAATACCCAAATATCCTGCGGATT 2070235 28 100.0 32 ............................ ATATCCTCTACTGTTAATTAGTTGATTATTTA 2070175 28 100.0 32 ............................ GCGACCAATCAGGGACACTCGTATCACAGAAG 2070115 28 100.0 32 ............................ TGTTAGCTCACCGAAGCTACCCAGTGCACCAT 2070055 28 100.0 32 ............................ ACTACAAGCCAGCGACGACAGTTATAATTTTA 2069995 28 100.0 32 ............................ AAATTAATAAAATTGTTGTGCGATTGCGTGAG 2069935 28 100.0 32 ............................ ATTACCCCTACAAAACGCATAACATTGTTAAA 2069875 28 100.0 33 ............................ CAGGAAAAAAACCGAAGTATTTAAGAGATTTCA 2069814 28 100.0 32 ............................ ATTTACCCCTTCAATATCGGTTGTGTATTTCA 2069754 28 100.0 32 ............................ CGTTGAAGAAACCTCCACGCCTTTAAAATCAA 2069694 28 100.0 32 ............................ TTTGAAAACCCGGTATTTTGATTTTTCTCAAC 2069634 28 100.0 32 ............................ ATTTATCCCAAAGCGACATGTCATCAGGCATC 2069574 28 100.0 32 ............................ CATTTGGGGCAACGAATGACGAAAAGCGCACA 2069514 28 100.0 32 ............................ TCTTTCCGTTTATCTTTGAAAAAATATCATAT 2069454 28 100.0 32 ............................ GTTTAGTAACGGGTCAAGCGGAAGATGAAATC 2069394 28 100.0 32 ............................ AATCTTGCCGAGAAAATCGCCGAAAGAGAAAG 2069334 28 100.0 32 ............................ GATCGATATGTTTTTAAATACAGTTTGCGGAA 2069274 28 100.0 33 ............................ TTGATAGCCGTGAAAGCTACGATCACCTTTTTT 2069213 28 100.0 32 ............................ TTGTCACAAACGACATCTTTTGTCTCAACGGT 2069153 28 100.0 32 ............................ ACCCGCACTTGCTGTTTTATTCGCCCAGTTAA 2069093 28 100.0 32 ............................ ATCAACGGGAGCGTAAGCGAAATGAAGAAACG 2069033 28 100.0 32 ............................ TTTTTTACATCTGCCATTGCGCTTTCAAATTT 2068973 28 100.0 32 ............................ ACTTCCGCGAATTTCGTTAAAAAACGACCGCA 2068913 28 100.0 32 ............................ GCAACAAACGGTTATTACGAAGAAGAGATGGA 2068853 28 100.0 32 ............................ TTTGACAGCAGTCGAAGACGAAAGCGGCGATC 2068793 28 100.0 32 ............................ GAGCGTTATCGACCGTCGATGACAAAAGACAG 2068733 28 100.0 32 ............................ AATGATAGTTACTAACATTAAGCCGATTGCAC 2068673 28 100.0 32 ............................ TTGCCACACAATCGGTCGAGTGAGTTCATTTG 2068613 28 100.0 32 ............................ AGCTGATCAAAAGTTAAATTCTTGTCATCTTC 2068553 28 100.0 32 ............................ GAATGAGGCACCTGAATCTGGCAGTTCTAAAC 2068493 28 100.0 32 ............................ TCCCACCTATCCGCATCCTCAGGCCACTCACC 2068433 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 2068373 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 2068313 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 2068253 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 2068193 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 2068133 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 2068073 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 52 28 99.4 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //