Array 1 65100-63850 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLSN01000014.1 Escherichia coli strain MOD1-EC5100 MOD1-EC5100_14_length_134820_cov_48.6122, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 65099 29 100.0 32 ............................. GTCACGCTGGCCGGTATTGGCGGATTGATTGG 65038 29 100.0 33 ............................. GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC 64976 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 64915 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 64854 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 64793 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 64732 29 100.0 32 ............................. TACCGCTGTTCATGCCGGAAATTGACCGGACC 64671 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 64610 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 64549 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 64488 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 64427 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 64366 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 64305 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 64244 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 64183 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 64122 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 64061 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 64000 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 63939 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 63878 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 21 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 91927-90800 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLSN01000014.1 Escherichia coli strain MOD1-EC5100 MOD1-EC5100_14_length_134820_cov_48.6122, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 91926 29 100.0 32 ............................. GCGCTCGATAGTGATTATTGGAAGGTGGGCGA 91865 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 91804 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 91743 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 91682 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 91621 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 91560 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 91499 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 91438 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 91377 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 91316 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 91255 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 91194 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 91133 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 91072 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 91011 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 90950 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 90889 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 90828 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //