Array 1 72770-71772 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVZ01000025.1 Streptomyces thermoviolaceus subsp. thermoviolaceus strain JCM 4843 sequence25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================================================================= ================== 72769 33 93.9 28 .............................T.G. CCAGCTTCCACGCCGACTTGCCGAGCAG 72708 33 90.9 28 .............................G.AG CCGGGCTCGACGTCACCCCCGAGAAGCT 72647 33 87.9 28 .............................AGTC CGGCCGCTGCCGAGACCAGATCGGGCGT 72586 33 90.9 28 .............................T.GG TCGCCTCCCGGCCGCTGCTGTTCGACGC 72525 33 90.9 28 ............................T..TC TTGGTGTGGTCCCCCTGGTTCCGCTGGA 72464 33 90.9 28 .............................AA.C TCGTCGAGTTCCTCCACCCGCCTCATCA 72403 33 90.9 28 .............................A.GA CGAGTTCGTCGTTGGCGGTACGCAGGAA 72342 33 90.9 28 .............................AT.A GCCGCGGGCTGAAGAAGCTCGCCGGCGA 72281 33 100.0 28 ................................. ATCAAGGCCGCCCCCTGTCATGATCCGG 72220 33 100.0 28 ................................. TCGGCCGCTCGTGCGGCAGGCCGTGGCG 72159 33 97.0 28 .............................G... ACGAACTCGTTCGCGACGACGCCTTCCC 72098 33 87.9 28 .............................TTGC GCGGGTCGGACTTCTCGGTCCAGGTGAT 72037 33 87.9 28 .......T.....................T.GC GGTACCGGACAGCCGCTTCCACTGAGTC 71976 33 87.9 28 .............................GTAC GTGAAGGGCTTCAAGCCGGCCCGCGACA 71915 33 90.9 77 .........A....................A.C GGGCCCAACGCGGGCCGCGCCGTCATGTCTTCCCACCGACGGCCGCTGAACGAAACCGATGGTGCTTGCCGTACCTT 71805 33 81.8 0 ......T...A....TC.......A.......G | C [71801] ========== ====== ====== ====== ================================= ============================================================================= ================== 16 33 91.3 31 GTCCTCCCCGCCGACGTGGGGGTGTTCCGCCCT # Left flank : CGACGTCCAATCACTTCTTACCCCACGCCACAACGCCGCCGTCGGCACCGACGACGATAAAGACGAAGAACGCTCCGAACGGCAGGACGTACGCATGGTCCACCTCTGGGACCCGCACGCCGGGGTCCTCCCGGCAGGCGTCAACTACGCCGCAGGAGGCAACTGATGCCGTCCATGGTCGTCATCGCCACCACCGCGGTCCCCGCCCACCTGCGCGGCGCCCTCAGCCGGTGGACCAGTGAAGTAGTACCTGGCATCTTCGTCGGCAGCGTCTCAGCCCGCGTCCGCGACGAACTCTGGCTCCTTGTGACGGAGGTCGTGGGTAACGGCGCTGCCGTCCTTGTCCACCCGGCTGCCACGGAACAGGGATACGCCATCCGCACCGTTGGAACTCGCCGCAGGGTCCCCATCGACTTCGATGGTCTTACCCTAATTCGCATGACCCCCAACCCGAAGGCAAAGGAACTGCAAAGCCCTCCATAAGATGCAGGTCAGAAAGG # Right flank : CGTACAAGCCGGCGGCTGCCCGCCTCGCGTCTTCCCCGCCACGGTGATGACCGAGTGGTGGGGGGATGCCGGGACCTGATCGTCCTCGGCGAGAGCAATGACGGCATGGTTCAGGTGTGGTCGGGCAAGCCCACCGCCGCCGTCCGCGATCCGGCCCGGCACTCGCGTCGAAGCCCCAACGGGCCTTGGAGCCGTTCGCCGCCGGCCCTGCCCCGATGGCCCACATCGTGTGCGCCTCGCCGTGCACCCCGTCCTCGACAGGGCGTCACTGACACCCGCGGCACTGCGGTCGGTGAACGAACAACTGCGGTTGCACAAGCTGCTGGGCCGCTCCATCTCCGGCCTGCCCACATCACTGAACGGCGTGACCGGGGCTCCGTACGGGCCGGTGTGGCCGCTGGACCCCCCTGTGGCCGCACTACCTTTGGCGCGTCCGCGACTGGCTGACCCTCCAGCAGCACGCCACCACCAGGCAGTGGGCCGGACACCTCGCCGCCGCC # Questionable array : NO Score: 4.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:0, 6:0.25, 7:-0.20, 8:1, 9:0.21, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGTGGGGGTGTTCCGCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 82681-83196 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVZ01000025.1 Streptomyces thermoviolaceus subsp. thermoviolaceus strain JCM 4843 sequence25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 82681 28 100.0 33 ............................ TCCAAGGAGCACGCCCGGGTGATGGAGAACTTG 82742 28 100.0 33 ............................ TACACGGCGAGCCGCCGCGGGTCGCGCATCCGG 82803 28 100.0 33 ............................ GCCGGCATCAGGGTCCTGAACTGGCACGTGACG 82864 28 100.0 33 ............................ CGCGAGAACATGGCGCCGGCCGCGTGGGCAGCG 82925 28 100.0 33 ............................ CAGCCGGGCCGGGGTGGCTGGGGCGGGGCCGAG 82986 28 100.0 33 ............................ GAGCTGCAGACCGAGCGTGACGCCCGCGATCTG 83047 28 100.0 33 ............................ AAGAGGGAGGGAAAAGGGGGGCAGATTTCGCAG 83108 28 100.0 33 ............................ CGTCCCGCCGACCCCGCGGAGATCGCGCGCGAG 83169 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 100.0 33 TTCTCCCCGCCGACGCGGGGGTGTTCCG # Left flank : CGGCCAGCTCAGCACTCAGGTACCGGCCTGCATGCACGGAGCAGAACTGAAAACCAGACAACTTCCCTATATCGTGCAGCCCCGCACACAACCCCACAACACTTCTCGCCCGCTCAACCTCACCGACAAGCCCAAGCCCCTCGGCAATCCTCACCCGCTGATTCTCGGACAGATACGCATCCCACAGATGCAGCGCCATCGCAGCCGCATCCAGACAATGCCGAATCAACGGATACGGCGGCAGCGCCGGATCCAGCCCCCTCGACTTACCCCACACCGACTCATCCGGCGCTCCCGGTCGCCTCGCCATCATCGTCCTCACCCCCGGGGCAGATGCCGTCCCAGTACCGAAGGCGGCATTCAAGCACTTCCCAGTGACAGCGCCACCGCCATCCAGCCCCCGGTAGAGTGACGACGTGCAGCCTCAGCCATCCCTAGATGACATGCTCACCAGAGCAAAGAAAAGGCAAAGCCCCTCTTGAGTGCCTGGTCAGGAAGGG # Right flank : TCCTCTCATCGCGTCGTGGATCTAGGTGTTCTGTCCACGGAGGTTGGTGACAGCGATCACTGACGTGTGATCTTGAAATGGGTGAGGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCTCCCCGCCGACGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCTCCCCGCCGACGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 82-936 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVZ01000030.1 Streptomyces thermoviolaceus subsp. thermoviolaceus strain JCM 4843 sequence30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================================================== ================== 82 28 100.0 33 ............................ CGCGTGATAGCCATGCCCGGCCGCCTGACGGCG 143 28 100.0 33 ............................ CCGGATCTCGCACCGGATGCCGCCCGGCTCCAG 204 28 100.0 33 ............................ TAGCCGGATCGTCTCGTTCAGCCTCTCCTCCAG 265 28 100.0 33 ............................ CCCCTCGGCCGCCCCGCCCGGGTCGGGCTGGGG 326 28 100.0 33 ............................ GAAGGCCGACAACCTCAACTTCCGGCACATTCG 387 28 100.0 67 ............................ GCACATTAGGCAAGTACACCGAGAGCCAAGTGGTTCTCCCCGCCAGGCGCAGTCCCGGATGATTCGG 482 28 100.0 33 ............................ AGGGCCACGACCCAGGCGGTGACCTCATGACGG 543 28 100.0 33 ............................ TCGCGGTACCGGACAGCCGCTTCCACTGAGTCG 604 28 96.4 33 .......T.................... TAATGGGTGACCCGCACCTCGCGCCCGTCGGCG 665 28 100.0 33 ............................ GCGGTCGGCACGCTCTTGGTGCTCGGGCGCTGG 726 28 100.0 33 ............................ GCAGTCTCTATGAAGATCGCGGCTGGCTCCAAG 787 28 92.9 33 .....T............A......... ACGGGCCGCACCGTGGAATTCCACACCGTCTTG 848 28 100.0 33 ............................ GCGCGGCGTGGGCCGAGGTGCCGGCAGTCGCCG 909 28 67.9 0 ........TT........C.A..ACTGC | ========== ====== ====== ====== ============================ =================================================================== ================== 14 28 96.9 36 TTCTCCCCGCCGACGCGGGGGTGTTCCG # Left flank : CCGCGGACACACCGCGCTGAAAGGCCAGCCACCCGCCAGCCGCGTTCCTAACCTCTCAGGGCAATACATCTAGGGCCGGAGT # Right flank : CTCCTGCCGTGGCCATTCGCCCCTTCGTGCCAGCAGGCGCACCAAGCGGGGCACGAGCTCGCCGTCCGCGCATGTGTTCTGGTCCGCCGAGACCAACCCACTCTGTTGATAGCGCCGCTCCGATCGCCGACCAGTAGGTTTGGTCAGCGGCGGGCCCGCGCGCCCCGTGATCACGCCGTCGTACGCAGCGCAGCAGGCGGCTGGGGGATCACGGCCTGAGCCATGGCCTGCCGCACAGCGCGAAGGCCACCCGGAGGACCCGGGTGGCCTTCGCTAAGCCTGAACCCTGGGGGTATGGCCTGCCCTCTTCAGAGGGCTACCAGGGACGATGCCAGGGTCTTCGCTGATCAGCGTACCTACGCTCCGACTGCCGCGACCCGTCCGGCGCCCACCTCGAGGTCGGCGTCGACGTCGCGCTGGCCAGGTGCGAGGAAGGCGGCGTCGGCCGGTACCCGGGCGGGCGGCACCGATCCGCGGTTTGAGAATGGGCCCTTGGCGGT # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCTCCCCGCCGACGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCTCCCCGCCGACGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //