Array 1 3474-5205 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHRR01000015.1 Bifidobacterium longum subsp. longum strain MCC10070 contig0015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 3474 28 100.0 33 ............................ CCATTGGGTTATCGTGTGGCCGGAGATGCACGC 3535 28 100.0 34 ............................ AGATGAGGATCGAAATCTCGTCCGATACGGCAAA 3597 28 100.0 33 ............................ TTTCCGTAGGCAGAGTTTTCCCAAGCCCTCTGG 3658 28 100.0 33 ............................ CACGTGCGCCGGATTATTGATGGCGGGTACTGG 3719 28 100.0 33 ............................ GACCTTGTCCTGGTCGGTGATCGTGGTGAACCG 3780 28 100.0 33 ............................ TGCCAATCCCGGAATATTCTTCTTCATGCTCTT 3841 28 100.0 33 ............................ CCATTCGTTCGCTGCGGGCGGTTACCCCGCAGA 3902 28 100.0 33 ............................ AACACGGCGGCACAATCCGGCAAGACCGGTGAC 3963 28 100.0 33 ............................ CCATTGGGATTTCGACTGGCTCGATCGCATCAT 4024 28 100.0 33 ............................ GGTATTCGGCCAGTATTGGGAGGATGCGGAGTT 4085 28 100.0 33 ............................ AAAAGACCTCATGTTTGCGGGTCGCGCGCCCAT 4146 28 100.0 33 ............................ TCACCACAATGAGGGCAGCAGCAGCAATCACCC 4207 28 100.0 33 ............................ CCCTCGAACTGGTCGCGTTCGTGCCTCCGGCCT 4268 28 100.0 33 ............................ CTTCTCGACAGAAAGTGACTTGTTTAGTCGCGA 4329 28 100.0 33 ............................ CTGGTACGAGGATACGTTTTCGGGGCTTGTGGA 4390 28 100.0 33 ............................ GTGCCAACCCAATAAACATCAAGGAGCAACCCA 4451 28 100.0 33 ............................ GCGAGGATAATAGACAGGCCTGCATCTTCTGCA 4512 28 100.0 33 ............................ GAATGGCTGCCGGGTTCTGTTGCACGTAATCGA 4573 28 100.0 33 ............................ GAATTTGTCCGGACCGGCCGGCTACGGCAAGTC 4634 28 100.0 32 ............................ CATGTCACCCAACCAGAAAGGAACTCACATGA 4694 28 96.4 33 .........................G.. TGAATACCAGATGGTCCACTTCGATGCCGCCGC 4755 28 100.0 33 ............................ GATGGGCGCGACCAACGGCACCGCCGCGACGGG 4816 28 100.0 33 ............................ GGAGCGTTGGCATCTCGGAGTGTGTCGCGTTTG 4877 28 100.0 33 ............................ CGAACTCATCGACAGCGAACATCTCGATGCCGC 4938 28 100.0 33 ............................ TCATGCCGGGAATGGCCATGTGCTGGTCGTTGA 4999 28 100.0 27 ............................ CGAAACCACCGGAGAAATACTACCTAC G [5020] 5055 28 96.4 34 .........................C.. CAGTCGGAGGTCATTCCGAGTGCGTTGCCTATCG 5117 28 96.4 32 .........................C.. CACGCGCGGGCGACCTGAAATGAGCCGAACTT 5177 28 89.3 0 .A.........G..T............. | T [5180] ========== ====== ====== ====== ============================ ================================== ================== 29 28 99.3 33 ATCTACCCCGCACACGCGGGGATAAACC # Left flank : CGAATGCGCGACATGATGCAGGACGGCAGACTGCTGGAACGTTGCGTACATGATGTTTCCACTCTCCTCTCGGAGGAGCCCGATAACGAGGACAATTGTTCCGTCTGGACTGGCGGGCAACGATACGGGAAAGCCGGTCAATCGTGGGCACCGTCGTGATACGACTCGAAAGCGCTCCACAAGGACTGCGCGGACACCTATCCCTATGGATGGTGGAAATCAGCAGCGGCGTATACGTCGGAGACCTCAACACCCGGATACGTACGCGACTCTGGCAACGAGTCCTCTCGGAACTCGGTACGGGCAGAGCGACGATGGCATGGCATTCCCAGCATCAGCTACATGTCAGCAGCCAAAACGGAAAGAAGACGATAACCGCTTTCGACGGAACCATCCTAATGTCCAGACCGCCTAAAGCCAAAGACAATACGGCCTGAAAACAGGTACGCAATTTGCATAAACAGCCCTCGCATGGCATTGAAAACGTTGAAAACTAAACT # Right flank : CGATGCCCTTTTCGAATTTCGTTGAACTATCACGACTTACCCCGCGCATGTGGGGATGGTTTCTTATCCGTTTTCCAATTTGCCTGTTATATTGAATACAGTCACATAGAAATGAAAGAGGAAAAACAATGAGCCCTTCGGAAGCCAGTGCCACGAAAATCCCTGCCACCTCCATAGACCGGCACTAATTGGAGTGGGGGGCAAAAATGAATCATCCAGACCAACTCAGCCGTGAATATGCGGCGATCCTTCCCGCCTTGAAAGACCACGGCTATCGAGCCGACGTGAAAGCAAGCATCGCCGACGAACGTTTCATCTTGGTCGTCAGCGGCAAACCCACCACAAGAATCTACCGGGACGGAGGATGGGTTCGCGACGATGGTGCGAGAGGATCCACTCCAGCCGACCTACTCAGCTTCTACAAGCATGAGCATTACACGGAAGCCCTGAAACATTGGACGAACAAGGATTGGCGTGGAATCGCCCGTGACCTGCTAATC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACCCCGCACACGCGGGGATAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 773-433 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHRR01000014.1 Bifidobacterium longum subsp. longum strain MCC10070 contig0014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 772 28 100.0 33 ............................ GGCGGCCGTCGCCATTATCGCCGTGGTGGTCGT 711 28 100.0 33 ............................ TAGGCAGAATCTAATTGCCCAATTTTGGCAGTA 650 28 100.0 33 ............................ TTCATCAGGAAAAACGACACCAAAGCCAAAGCA 589 28 96.4 39 .......T.................... TAAACCTCGATAGAGCGATTGCGGTATATGACCTACCCC 522 28 92.9 34 .......T.................A.. GCGGGGCGACATGCCGTAGAGCCAACGGAAAGAC 460 28 89.3 0 ....G.........T..........A.. | ========== ====== ====== ====== ============================ ======================================= ================== 6 28 96.4 35 ACCTACCCCGCACACGCGGGGATAAGCC # Left flank : CGGATCCGAAGGCATCCAAATGGTCGTTGAACGGCATGAAATACCGCGGTTTCAGCAAACCAACCCTCATGGAACAGGCATCATGGTACGCATTCGGCCTATACGCCTACCATCAGCAAGGCAACCAGTGCAAACCCATGTACGTGGAGGGTGAACACTTCAACACGGCTTTACGCACGTTGGCCGATACCGGCGAAGACGTTGACGAGCTCTACAGGAAAATGATGAACGCGCGAAACATGCAGGAGGCCGCACCGTTCTGTCTACGTATAATCCGACTGTTTAACGAGTATGACATTCCATTGGATCACGCCCTGCTGGCATTGGATCTGGCGAGACTCAGCAAACCGGACTCGGCAAACACAGTGCGGCGCGACTGGGGCCGACTGCTCAACTGATTGTCCGCCGGCCTGCGATCAATGGACAATCAACTCAGGAAACAGGTATGCAATTTGCATAGACGGCTCACGCATGACCTCAAAAACGTTGAAAACTAAACT # Right flank : CCCTGTGAGCCACTTTTATTGACATCTGACTTTTCTCTGTTATACTGAATATGTCCACATAAAACAGAAAGAGGAACCAATGACCAACATCATCGAAAAACCCAAGACCAACACACTCATCGAAGAATACCGCCAACAGGCACTGGCATACGGGCACGAAAAAGCAATCCGCACCTTCGCCACCCCCATGCTCCAAGCATGGGAGAAAGCCTGCGAAGGATACGCCGACGAAGACACGGAACTCGAAGGGTTCGCGGAACTCATGTCCGAAGTATTCAACGTCAGGGATGCGGCAATCGCCGCCGCCATCAACCCACGATTCAAGATCGGGACCATCATCAACCTCGCGGCGAAAGCCCACACGCCATACTATAAGAGGCTTCTTTCCAAAACACTCCCGTTGTCTAAATGAAAGTGCAACACCCGTTAGATT # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTACCCCGCACACGCGGGGATAAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 71-2741 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHRR01000031.1 Bifidobacterium longum subsp. longum strain MCC10070 contig0031, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 71 36 100.0 28 .................................... CTTCCTTTCCATTATTGAAAATCTCCAG 135 36 100.0 28 .................................... TTATCAATGAAGTTGCGGACGATGTTCG 199 36 100.0 28 .................................... CGCGAACTTAACGGGGAGCCGGCGTTCC 263 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 328 36 100.0 28 .................................... CGTCTCGTGTTCTGGGCCCTCGTGTTCG 392 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 456 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 520 36 100.0 28 .................................... CATCGAGACGACGCGCGAACTTGAGGCC 584 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 649 36 100.0 28 .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 713 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 777 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 841 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 906 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 971 36 100.0 28 .................................... GCCAACGGCGCGTACACCGGCAACTTCA 1035 36 100.0 28 .................................... AAGAAGACCGCGACTATCGGCTACCAGG 1099 36 100.0 29 .................................... GTGGGAATCCTGTTGAAGTGGGGTGAGGA 1164 36 100.0 28 .................................... AGGAGGTTCAACGCAAGTATTTCACGGC 1228 36 100.0 28 .................................... AGTCATTTGGTGTGCCTTTCACGATGAT 1292 36 100.0 28 .................................... TTGCATACGATGTCGAATATCCCCTCTC 1356 36 100.0 28 .................................... TGTCCTGCATTTCGTGCAAGACCGCTTC 1420 36 100.0 28 .................................... TGTACGCTGACGAGTTTCCTGTTGCTCA 1484 36 100.0 28 .................................... CGGCCCAACGGAGGTAGGTGCTGCGATG 1548 36 100.0 28 .................................... CCAGTTCGACGCGTAGGCGCGAGTGTCC 1612 36 100.0 29 .................................... CCCTTGCGCGTACTGTGCTTGTAGGTGGC 1677 36 100.0 28 .................................... CGTAAACCTTGTTAAACAAGTTGTCAAA 1741 36 100.0 28 .................................... TGTCCTGCATTTCGTGCAAGACCGCTTC 1805 36 100.0 29 .................................... CCAAGTGTGGGCCGAACTCAACAACTAAG 1870 36 100.0 28 .................................... TCAATTCCGCGTCAACTTTCCAGCACAT 1934 36 100.0 29 .................................... CGCCTCGCCGCCGCACGAGAACGAGTCAA 1999 36 100.0 28 .................................... TATGGTGTAGCCAACAACAAAAACAAAC 2063 36 100.0 29 .................................... CCCTTGCGCGTACTGTGCTTGTAGGTGGC 2128 36 100.0 29 .................................... CCCTTGCGCGTACTGTGCTTGTAGGTGGC 2193 36 100.0 28 .................................... TATGGTGTAGCCAACAACAAAAACAAAC 2257 36 100.0 28 .................................... CGGGTAACAAGGTGGACATGCTCATTGA 2321 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 2386 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 2450 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 2514 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 2578 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 2642 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 2706 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 42 36 99.7 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : GACCAACAAGGGTGTTGCACTTCTAAATAGACATCGGGCAGCGGTTGGTTCGATGATGCAACACCTATACC # Right flank : TGCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTACGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCAACTGAATATCTTTAAACTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 11228-10792 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHRR01000032.1 Bifidobacterium longum subsp. longum strain MCC10070 contig0032, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================================================== ================== 11227 25 77.8 72 GA....-..-...........G..C.. AGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACGGTCCGA 11130 27 59.3 33 GC.ACG..C.....C...G.A..C.C. ACGGCGGTCATCACGATCGCCACGGTCATCGCG 11070 27 96.3 54 ........................A.. ATCATCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AAG [11064] 10986 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCGCGGTC 10926 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [10879] 10878 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 10821 27 81.5 0 ......A.......C....C.....CG | CC,G [10796,10801] ========== ====== ====== ====== =========================== ======================================================================== ================== 7 27 85.2 41 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : TGTGGCCGCGCTGTTCATTCTGGACTTCGTGTGCATGGCGATTCTGTAACGCTGATTGACAACGGATTAGCCTTTAAGGATTAATCCGCCGCCATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTTGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACTGACAACTAAATGTACATGGCAGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCTCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTGCGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGCTTTAGTCCTCGAACGGATCGAAGTCGC # Right flank : ATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCGATCTTCTCAACCGGGA # Questionable array : NO Score: 4.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.29, 5:0, 6:0.25, 7:-0.92, 8:0.8, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.30,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 221063-222443 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHRR01000032.1 Bifidobacterium longum subsp. longum strain MCC10070 contig0032, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 221063 36 100.0 28 .................................... CGCCGAACAATCTTATTCAGCACTGATT 221127 36 100.0 28 .................................... GGTGTTTCGCCGGCTATGTACAGGCTGT 221191 36 100.0 28 .................................... ATCCAGATCATGGGCGAGGCGTGCCTGT 221255 36 100.0 28 .................................... GCCTTCTCTCGCTTGTGCGGCCAGAAGC 221319 36 100.0 29 .................................... AATGAGATCGTGAAGTTCAGCAACCAGTT 221384 36 100.0 28 .................................... TCTACCGACGTGATGGGCAACTACACGA 221448 36 100.0 28 .................................... GGCCACAACGAACCCCGCGTAACACCAA 221512 36 100.0 28 .................................... GGTTCGGGCGTTCGTTCGATGGCATCGA 221576 36 100.0 28 .................................... AGCACGCGGGCATTACCGGTAACCCCAA 221640 36 100.0 28 .................................... TGGCGCCGTCCTCCCATTGGCCGGTCTG 221704 36 100.0 28 .................................... GCCCGGAGGGATCATACAGCCCGGTGAC 221768 36 100.0 28 .................................... TGTTCTTGCGCGGCCTTCCCCGCCGACA 221832 36 100.0 28 .................................... TCGTTGGCGTTGAAGCCCACGTCCGTTC 221896 36 100.0 28 .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 221960 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 222024 36 100.0 28 .................................... CCTTGATGTCAACGGTGATGTTCTTCGC 222088 36 100.0 28 .................................... ACGCGGAAACTGTAGAAGTGCCCGCGAA 222152 36 100.0 28 .................................... CAGTGTTGCCGCTTTTTCGGGGGTGTCG 222216 36 100.0 28 .................................... GTAAAGGGTGGCGTTTTGTCGAAGTCAC 222280 36 100.0 28 .................................... GTCGTGTCGGTATCACCGTCACCGTCAC 222344 36 100.0 28 .................................... GGTCAAGTAGGGTCATGCGGGGTCAAGT 222408 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 22 36 100.0 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : CCGTTGTCTAAATGAAAGTGCAACACCCGTTAGATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //