Array 1 1177946-1180619 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065707.1 Streptococcus oralis strain FDAARGOS_885 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1177946 36 100.0 30 .................................... AGACAAGACAATCAGTGTTTCAACTGCAGA 1178012 36 100.0 30 .................................... TCGCTCGCTTGAATGGGCAGGTCGAAAGTA 1178078 36 100.0 30 .................................... AAACAATCTATAGTTTAGAATTTAATCATA 1178144 36 100.0 30 .................................... CGCTAGCTCTGAATATAGCTCAGTACATCG 1178210 36 100.0 30 .................................... ATGTTTCAAGCTAGTTCAGAAAAGTTTTTC 1178276 36 100.0 30 .................................... CGCCATCCTTACCAGCGACACCATCTCTAC 1178342 36 100.0 30 .................................... GTGCTGATTGCGTTTATGTTTGCGATGCAG 1178408 36 100.0 30 .................................... TGTTGCTTGCAAATGCCTTTAACATGGACA 1178474 36 100.0 30 .................................... AATTGACGTCATTATTAAAGCCGAACAGTT 1178540 36 100.0 30 .................................... TTTGGAGTGGTTCTGGTGCTGTTATGGCAA 1178606 36 100.0 30 .................................... TAAAACAATTTTAATACCTGATTTGAATTT 1178672 36 100.0 30 .................................... GTATACCAACCTCAGTACCTACCTAGGACA 1178738 36 100.0 30 .................................... CTTGATATCGATATTGTTTCGTTTCAGTGT 1178804 36 100.0 30 .................................... CTTGACTATGAAGACCATGCAAGCGACGAC 1178870 36 100.0 30 .................................... ACCAGCGTAAGCCAGTTGCCTTCCTCATTT 1178936 36 100.0 30 .................................... TATTCCCGTAAATGTCATATAATTCAATTT 1179002 36 100.0 29 .................................... TTTCACCAGCACCAACATCTCTAAACCAC 1179067 36 100.0 30 .................................... TAGCAGGGCCATTACCAAGTTTGTTGTTTA 1179133 36 100.0 30 .................................... CTTTTTTAGTTGTTTCACGGAATTCGATTT 1179199 36 100.0 30 .................................... TTATCGCGTCCAGAAATAACTGTATCTTCA 1179265 36 100.0 30 .................................... CTGAACTTATCCAACAGCAACAAGAAATTC 1179331 36 100.0 30 .................................... AAATCCACAACCAATCATTTTAAATATTGA 1179397 36 100.0 30 .................................... AGAGGACTTCAAAAAGGGCGCCGAACTTTG 1179463 36 100.0 30 .................................... TTGATTGCGATTTCAAAGCGTTGTTTTCGT 1179529 36 100.0 30 .................................... ACTCTTCAAGAAATCTATGTGCACCCAGCT 1179595 36 100.0 30 .................................... TATTTCCCTAGCATGGACGGAATACGTTGG 1179661 36 100.0 30 .................................... TTTGCCAGTTATTGTGATACCATTCAATGA 1179727 36 100.0 30 .................................... CCACATCAACGGTGACGGACTTGACCACCA 1179793 36 100.0 30 .................................... TAGGTCCTCGCATACCAAATATTCTGAATC 1179859 36 100.0 30 .................................... CTAAGGTCAAAGGCTTTGTAGATAAACGCA 1179925 36 100.0 30 .................................... CTGTCCGTGCTATGCTAAAGCTAAGAGCAG 1179991 36 100.0 29 .................................... TTTTTATTTTGATTTAAAAATTAGTAGGA 1180056 36 100.0 30 .................................... TACACTGATAGGCGGATGGGCTAGAGTGCA 1180122 36 100.0 30 .................................... AGATAAAATATAACAAAGTGGACATCTCCA 1180188 36 100.0 30 .................................... TTGCTCTGTGCGACCAAACTGAGGATATTT 1180254 36 100.0 30 .................................... TTCTTAAAACGTAGTATACTCTTATCATCT 1180320 36 100.0 30 .................................... AATCTTCACAGTAGAGTCATACTTGTCTTG 1180386 36 100.0 30 .................................... AGCCTCACCTTCATTGTATATTAGACCTTG 1180452 36 100.0 30 .................................... AAATTCCAAGCTTTTGAGCTAATTCTTTCT 1180518 36 100.0 30 .................................... CGTTTGCAACATCCAAAATATCTCTAGAAC 1180584 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 41 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GGATGATTTTCTATCCTATAATGATTTTGTTGAATGTTGCGAGAAAATGGAGTTTTTGATTAATCATAGCGATTCATTATATATTGTTTCATTTCCTTCCAATGAAGGTTATCTTCATGTATCGAAAGAAGTTTTAGAGGAAATCAATATTGTTTCCGATTATGTTGATCATTTTTATTCTCTAGAATTTATGTATGATCGCTTTACCAATCAGTATCCAATAAATCAAATACCTGATGAACAAGAATTTTTAACCTCTTTAAGAAAAATTGGATCCTATTTATTTAGCTCGGACATTCTCCACATGAGTTTATCTGTAGAAGATCAAGTAGCATTAAAAATTTTGAATAATTTGTATCAGTACAAAATAAAAACAAAATTCCGTATTGAATCAGTCAATCCAATGTTATTGAAATATTTGGAAGAATAGTATTGACGAGTGAGATTTAAGGCTTTATAATGTTCTTGAGGGCACAAAAATCAAAATTGACGAATTTGAG # Right flank : CTGCAATTCAATTTATTGATTTACTCTCATTGTGATATATTCATACAAAAACCGCTCTGCTGAGCGGTTTTCGTCTATTCTTACCTTTTGCTACAATACCCACGTACGGATGGCATGGGCGACGCCAGATTCGTCATTTGTTTTAGTGATGTATTTGGCAATTTTTTTGAGTTTTGGATTTCCATTTTCCATAACAACTGGGTTACCAACGACTTCGAGCATGGTGCGGTCATTTTCTTCGTCACCGATCGCCATGGTTTCATCTTTGGTTAATCCGAGTTTTTCAGCTAGGTGAGTGATGGCTGAACCCTTGTCTACATTCTTTTTAAGGAGCTCAAGGTAGAAAGGAGCAGATTTGTTGATGGAGTAGCGTTCGTAAAATTCTGCTGGGATTTTTTCAATCGCAGCATCGAGAATCGCTGGTTCATCGATAAACATACACTTGACGATTTCCTTGCCATCCATTTCTTCAGGAGTGCGGTAAAAGATAGGCATGTTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1333952-1336307 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065707.1 Streptococcus oralis strain FDAARGOS_885 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================== ================== 1333952 29 96.6 46 ...C......................... TTTTCCTTAACGTAAGCCTTATGGTATTCAACTTCCAGCTGTTTTT 1334027 29 96.6 37 ...C......................... AGAAGGACTGTATGAATTGGTATCTTCATATTTAAGT 1334093 29 100.0 48 ............................. TTAAAGCGTTGCATTTTCTTGATTTCTGGAAGGTTATCAATCTTCAGA 1334170 29 93.1 42 ...C...........A............. TCTCCCCTTTTGACAGACAGGATATAGGAAACCGTATATTTC 1334241 29 96.6 38 ...C......................... GTTTTAACTTTCGAAAAGTGCTAATCGTTAAAAAATCA 1334308 29 100.0 38 ............................. GCTTATAAGGCAATCGATATTTCATTAGCTCATCCCGG 1334375 29 100.0 52 ............................. ATACCATCAGCTGAGTCGCCACGGAGAATCTTGTAAAGCAACAAGGTATTAT 1334456 29 100.0 52 ............................. GTTTAGAACCCCAATATACATAGGTGCTATTTCTCTACTATGCTCATCTAAA 1334537 29 100.0 51 ............................. GCTTGACCCCAGAGACCGTTGGTTTCTGCGTCAAAGCTAAATAGTTTGATT 1334617 29 100.0 44 ............................. AATATTTGGTATTTTACCAGCTCTTCCCGGAAGAAACTCCATGG 1334690 29 100.0 46 ............................. AATAAATCTTTCGCGGTCATACAAACCACCTCCAAAAAATATTTTT 1334765 29 96.6 43 ...C......................... AAGGAACTATCCTTCTCACCAGTTTTAGGTAGTCCTTTTTCTG 1334837 29 96.6 51 ...C......................... ATAACGTCATAAGACAATGTAAGGTCTGTTTCAGCCGTATATTCTGTTCCT 1334917 29 96.6 48 ...C......................... ATTCCAATCTCATCACCCAGACATTCAATTAAAACATAAATTTCTCTA 1334994 29 96.6 46 ...C......................... TTAAATTTCTCCTTCTCAGCACGTTGTGGGAAATTCTCTTGATAAA 1335069 29 100.0 39 ............................. TTTACTGTTAAATATCTTAATTTAGCATTTTCTCCTTTT 1335137 29 96.6 34 ...C......................... AGGTGATTCGTTAGCAGCAGTGATACCGTTCCAA Deletion [1335200] 1335200 29 100.0 42 ............................. TCTCCCCTTTTGACAGACAGGATATAGGAAACCGTATATTTC 1335271 29 96.6 49 ...C......................... ATTGTCTTTAAATCGACAAAATATCCTTTGGAAATATTCAGACTGTCAA 1335349 29 100.0 44 ............................. CTAATCGCAAAGCTAATAGCTCCTGGAACAGCAATTACAAGATT 1335422 29 96.6 43 ...G......................... TTTTGGCCGTGACCAAATTTCATTTTCGCCGATTTTGCGATAA 1335494 29 100.0 46 ............................. AGATATCCAGATTTTAAATCAAATCTATCAACTTGTGAATGTTCTT 1335569 29 96.6 47 ...C......................... CTATTAGGATATCATGAATTCTTGCTAAAAACGATGGCTCTTCATCT 1335645 29 100.0 40 ............................. GAATACGTTCTTTTTTCGAAATTTCATCTTGAATTTTATA 1335714 29 100.0 47 ............................. TCTTTGATGATTGGACGGATCTTATCTTCTTTGATCTTGTTCTTGTC 1335790 29 100.0 46 ............................. TTCCATTTGTGGAATAACTTTCTCAGCCACCCAAGGGTTTACTTCC 1335865 29 93.1 32 ...........................TT GCTCACTCTCTGTCTCCTTTGTGATATAATAG Deletion [1335926] 1335926 29 93.1 40 ..A..............G........... GTTAGAGTCCCAAGATATTTACTAGCACCTTCTCGGAATA 1335995 29 96.6 42 ..A.......................... TCTGTTTCTGAAAGAAAGTTGCCTGCCTTTAATGAGTCATCT 1336066 29 93.1 42 ..A....................G..... TTTTTTCTGATAAATTCCAATGAGTGTAAATAGCAATACTAC 1336137 29 93.1 42 ..A........................G. CGTCAATTCTGATTTGACTGCAATTCGTTCTTCCATTGGAAC 1336208 29 96.6 42 ..A.......................... TTTATTTAGAATACCTTGAAGATATTCTAGCTCCTCTTGATC 1336279 29 86.2 0 .........................GTTG | ========== ====== ====== ====== ============================= ==================================================== ================== 33 29 97.2 44 GTTATACCTTACCTATAAGGAATTGAGAC # Left flank : TAGTGATATAATCAAGAATCCTATTCCAATCAATTGTCTGAAAGTTAAACCTGGAATCTCTTTTGAATTTGGCTTTTATCTGAAAGATTGTCAGCTTTCAGACGGAGTTAAGAAGGTTACGGTTGAACAAAAAATAGAGTTATTTAAAAGCATCTTGACTGATGTAGGTATTGGCGCCAAAACGAATGTTGGTTTCGGACAGTTAGAGTAGCAGAGCTCAATCGACAAGGGGATTTACAAATCGTATCTGAGGGACTTGCGCAACTCAAATAGCTCGAAAAGGTATAGAGGAGCTTGTTCAGATTAAGGAGTCTGAATATAAGGCAGCATTTACAAAGAGTTTAGAAACAAGTGAAGTCAGCTATCGTACAGGGATAGGAGTTCAATCTTAGTTTGCGATAGCGATGGGTACAAAAAGATCGACCGACTTTTTCCATCGAAATCTTGAAAAAAGCCCTGTTTTTTGATACAATCAATCTAGAAACAGCGAAAATGCTGTT # Right flank : GCTTCAACTGAAAAAACTTGCGAGAGCAAGTTTTTTGTGGTATATTGGAAGTGCTTTCATGTTGAATGTCTTTATCGGAGGTTGTTTATGTCTGAGAGTCAATCTGTATATAGTCACCATATCTTTGTTTTGCCCTTTGCGGCCAAGGGGCTGGAGTCTTTTCCGAAGTCTTCCAATTGGAAGAAACTCAGCCAAGATGCCAATGAACTCCCCTATCTGAACGTAGAAGATGGTGAAAAAAGCGAGCGATTAAAGTACGCTTATCGCCGATATTTTAATAAAGAAGCAGAGGAGCTGATTTTCCGCAATCCTGAGCTAGTCACAAACTATGCTTATACTGGCTTAGAAAAAGGTGATGTGTATCGGATTTCTTATTATAATCAAATTGACAAACTTGAGTGTTATGACCTGACGCTTGACTATATCATGCTTCGTTATTTACCAAATTTAGAAGCAGGTTTCCTGATTTTCTCAATGGAAAATCGTCTCTATGATAAATT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.04, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATACCTTACCTATAAGGAATTGAGAC # Alternate repeat : GTTCTACCTTACCTATAAGGAATTGAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 1337985-1338315 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065707.1 Streptococcus oralis strain FDAARGOS_885 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================== ================== 1337985 29 100.0 45 ............................. ACACAACCCAAAAGAACGTGGAGATTGGTATCCACAATTATCACA 1338059 29 96.6 51 ................G............ TGTTTGCCATCGAAAAGACGAGTGTAATCAATGACAATTGAGTCACCTTTC 1338139 29 100.0 41 ............................. GCGCCCTCTTTTAAGGCAAGTTTTGGATTTAGAGTTCCTCG 1338209 29 96.6 49 ...A......................... ATTGAGTAAACTGTTGCGAGATTGTCGAGAATGCCAAAAGCAACAGCAT 1338287 29 82.8 0 ...A.....................GCTG | ========== ====== ====== ====== ============================= =================================================== ================== 5 29 95.2 47 GTTCTACCTTACCTATAAGGAATTGAGAC # Left flank : AGTTTCTGATAAACTAAAGCTGCAGAAGGCTTACACGACCTTTAAAAATCAATACCTGCTTCCGGAACTTTGCCCGCAGGAGCAGGCGATTGAAATCTACGAATTGCTGCAAACCTCACTCTATATCGAGAAGCATATCAATCTCCTAGATAGTCAAATCAGAGAACTGCATGATATCAGCCAGACGGAAGCAAGTAATAAATTGAATGACAGAGTATTAGTACTAACCGTTTTAAGTATTGCATTAGCAATCATTCCGAATATCAAAGAACTGCAGGAACACTGTCTGACGATTTGCAATCTGAGCCTGACGTATTCATCTTGGCTTACTTTGCTTATTCCTCTTTTGACAATTGCTTTCATCTATTTCAAAAAGCGAGAATAAATGTATATTATCTGGACATACGATGTTCATCACAAGCGCGTGCCTAAGATTTTGAAATCTTGAAAAAAGCCCTATTTTTTGATACAATCAATCTAGAAACAGCGAAAATGCTGTT # Right flank : GTGTGTCTTTGTCTGTCTCCAAGGCACCAAAAAAGCGAGCAAATTCATGTCTGCTGGGAAGCATGAGAATTTGTTCGCCTTTTGTTTTGTAAGAATTATCAAGAAAAACTCTCTTAGTGACCTGCACCCCAAAAGTTAGACAGAAAAAATCTAACTTTTTGGGGTCAGTACATAGTAGGAGAGTTTTTCCGTGTTTCAACCACAGATAGTATAGAGCTTAAGTTAGATGGCTGATCAGTTTTTTGTTACTTCACAGTGTCGCGAATATTTATTGGTCTATTGGGTTAAATTAAAAACATTCTTTTCTACTTCATTTATCGAAAAAGACCTGCTATCCAATAGCCAACCCTACTGTACTAGTTCATTTTCAGCTTATCTATGGTATAATAAAAGGTAGATTTATCAATTGGAGTATGAAGGATTTTATGATTAAACTTGTAGCAACCGATATGGATGGAACCTTTCTAGACGGAGAGGGTCAGTTTGATATGGAACGCCTC # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:-0.13, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTACCTTACCTATAAGGAATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //