Array 1 288448-288240 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPEB01000003.1 Pseudomonas cichorii strain 482 Contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 288447 28 100.0 32 ............................ GGGGATTGCCAGTGATTACCGCCTGTTCTGTG 288387 28 100.0 32 ............................ GTGTGCCGCTTTGAGTTCTTTCCAGATGCGGT 288327 28 100.0 32 ............................ CGAACATCATGGCGTGGCCCAGGTCGCGCACA 288267 28 92.9 0 ............A........C...... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 98.2 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : AGCTAATGCCTGTGCTGCTGACGACCGGTTACTTTCTGAGCTGCCTATACGGCAGTGAAGTAGACACTTTGCTGGATAACCTTTCGTTTTCAAAGAAAAATATGTGCTTGCGGTCGTTCAACCCCTCTTTTTCGTCGGTTCTGTAAGTGGTTGATTTTAACAGGGCGCATGGTGGGTGAAAAAAAGAGGGTCAGGATCGGCAATGGGGCTGCCCTGTGAGAATCAGTATTACCTGCTGTGTGTCTTGTCGCGGGCAAGCCCCCTCCTACGGGAGTAGTCCGACACGGTATCGAAGGCAGTTCATCTTGTGGGAGGGGCCTTGGCCGCGACATTGCCCATACAGAAGTGGGCCAGGAATAAACCCTTTCTTGACCCTCTTTTTTTACCTTAGATTTGTTCTTTAAAAATCAATGACTTATAAAGCTCGGTAAAAAAGGGGTAAAACAGCTACTGGTGCGGATTTTTCTTTGAAAACGGAAAGTTATCTAGCAGAGTGTCTA # Right flank : AGCTGATACCGCACCGCATTGTCGCGGGCAAGCCCCCTCCCACGGGAGTACATCCGATAGATATCTATCGTTTGAAGCACGTCTTCGCGACTGAAGTTGCTCCTACACAAGACAACTCACTCGCAAAGGCATTCAAACCCAACCCTGCACAAACCTTCTAGACTTCCCATCCCCCATGCGCGATAACACTCGTCCATATCCCCTTTTTTGCCCATAAGCCTGCCATGACTCAGAGCAACTGGATCAATCTTGCTCAGGACCGCGATACCGGTATCGAGACGCTGCATGCGCATTTCGAGGGGAATGCCCATGTCTATGATCCTCACTGGCATGACAGTTATCTGGTGGGTGTCACGGAGCAGGGGGTTCAGCAGTTTCATTGCCGGCAGCAACGTTATGCCAGCACGCCGGGTCAGGTGTTCATGCTGGAGCCGGGGGAGATTCATGATGGGGATGCGCCCAGCGCCGATGGTTTCACGTATCGGATGCTGTACCTCGAC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 288888-289335 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPEB01000003.1 Pseudomonas cichorii strain 482 Contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 288888 28 100.0 32 ............................ GTAACCGGTCGTCAGCAGCACAGGCATTAGCT 288948 28 100.0 32 ............................ AACTGAAGATATGAATACGGCTGGGGCTCGAG 289008 28 100.0 32 ............................ CATGCCAGCCGTGATTTCTACCGGCTTCTGGT 289068 28 100.0 32 ............................ TGTAATTTCTGGACAAACATGGAGGGGCAGGA 289128 28 100.0 32 ............................ CTACTGTCAAATGAAAACCTGAGCCACAACGG 289188 28 100.0 32 ............................ ACCAGCACGCGCCGGGCGGCACGATTGCCAGG 289248 28 100.0 32 ............................ CGTCCGCAGATTGTTCATTTAATCCTTCATTC 289308 28 89.3 0 ...........A.C..........T... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 98.7 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : CACAGAACAGGCGGTAATCACTGGCAATCCCCTTTCTGAGCTGCCTACACGGCAGTGAAGTAGACACTCTGCTAGATAACTTTCCGTTTTCAAAGAAAAATCCGCACCAGTAGCTGTTTTACCCCTTTTTTACCGAGCTTTATAAGTCATTGATTTTTAAAGAACAAATCTAAGGTAAAAAAAGAGGGTCAAGAAAGGGTTTATTCCTGGCCCACTTCTGTATGGGCAATGTCGCGGCCAAGGCCCCTCCCACAAGATGAACTGCCTTCGATACCGTGTCGGACTACTCCCGTAGGAGGGGGCTTGCCCGCGACAAGACACACAGCAGGTAATACTGATTCTCACAGGGCAGCCCCATTGCCGATCCTGACCCTCTTTTTTTCACCCACCATGCGCCCTGTTAAAATCAACCACTTACAGAACCGACGAAAAAGAGGGGTTGAACGACCGCAAGCACATATTTTTCTTTGAAAACGAAAGGTTATCCAGCAAAGTGTCTA # Right flank : AATAATCAATCCAACCGTCCAACAACCCCACAAGCAATTGATTTAAATAGACTTAATCCCCACCTGTAGGAGCGCGCTTGCCCGCGACAACCATTTTGTAATCCCCTCCTTACAAGAACCGCAGACCGATCTTTCTGACTAGCCACCACCCACACCCTCAAAAAACATAAAGCACCGCCTTACGCTTTCGGCTATATACATTCCTTTCTCCGGCCAAGTGCCATCACTGGTTCGATCATGGATGACATCAGCTCTTCGGATCTCAAGACGATCCTGCATTCCAAGCGCGCGAATATTTATTACCTGCAGCATTGCCGGGTATTGGTAAATGGCGGTCGGGTCGAGTATGTGACCGATGCGGGCAAGCAGTCGCTGTACTGGAATATCCCCATCGCCAATACCACGACCGTGCTGCTGGGCACCGGTACTTCAGTGACTCAGGCGGCGATGCGGGAGCTGGCCAAGGCAGGCGTGCTGGTCGGTTTTTGCGGCGGTGGCGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 298281-298013 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPEB01000003.1 Pseudomonas cichorii strain 482 Contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 298280 28 100.0 32 ............................ ATGCTCAGAGGACTGAGCGAGACCAAGGCCAT 298220 28 100.0 32 ............................ CGTCCGCAGATTCCTTCAGTAATTCATTAATT 298160 28 96.4 33 ............A............... ATCATCGAAGTTCATGTTGAATGCGTTGTTGGC 298099 28 92.9 32 ............A.....C......... ATCTTCAAAGTCCATGCCGTAGGCGCAGTTGG 298039 27 89.3 0 ............C........-..A... | ========== ====== ====== ====== ============================ ================================= ================== 5 28 95.7 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CTGTAGAACCCGAAGGCATAAGGGTCTTTCATTATTATTCTTGTCCCCATCAGTCAAGTTGGTCAGAGCATCAACCGCTTAAATGATGGGTTTGAGGGTAGTTGAGAGTGGGGGTGTTTGCTGCTGAGAGAGCGGGGAGAGGAGCGGATTTATCCGCGAGACGTCATTGAGGCAAATGCATTTTGTACGACGAAAGGCTCATCCCGCACAACCTTGTGGGAGGGGCCTTGGCCGCGACAGCTTCACACGGGATATGTCAGGAAATGGAGCTTTTCCGGGCTGTCATGTCGCTGGGGACGACATCAGAAAGCACAGGGTGTCCCACAGCTTGCGAATATCTATCCAGTGGTCAGAAATGAACCCTTTCTTGACCCTCTTTTTTCGCCTCAGATTCGTCCTTTAAAAATCAATGACTTACAACGCTCGATAAAAAGAGGGGTAAAACGGCTGCTGAGGCATATTTTTCTTTGAAAACGGAGAGTTATCGAGCAGAGTGTCTA # Right flank : AACCAAAGCCCTTGTAGTCCCACCTCACCTACAAGGGCTTCAGTTCATCGCCAACAGAACATCAGAACCAGGGAACAGTAGCCGTAGCACTCAACCCATAGCTATTGAATGTCCCTTCCTGGGCGCTGCTCTGTATCGGCTCATGCCGGATGAACAGCAGGAAGGTCTGGCCACTGGTACGGCTACGCATCTGGACAAAGGGCAGGTTGCAGCGTTTTGCAGCGCTGTCGGGGATGCGTTCGCGGGCCTGTTCTTCGGTGAGGCCGTGGCGTTTGATCAGGCGTCGTCTTGTGCGCTCCGGGTTGCTGTCCACTTGCACTCGGCTGACGCGCCGATGTTGCGCATCAGTGGGCACCGGGCTCAGTTCGCCTACTCGCACATGATCGCGCATGCCCGTCAGCCAGCTCTGCGCCATCAGGGCATCCAGCGCTTGTGCACTGCCATGCAGGCGCAGGCGGTCGCCCAGGCCCTTAGTCTTGCCTATAGCCGGGAAGCTGATA # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //