Array 1 5216-4787 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWMT01000015.1 Methanobrevibacter filiformis strain DSM 11501 MBFIL_contig000015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ========================================== ================== 5215 39 100.0 33 ....................................... TTTACCATTATATTAACACCAAGCTCAATTCCA 5143 39 100.0 39 ....................................... CCGCTGTCTGTTTCCAGTTCAATACCAACACCTGATCCT 5065 39 92.3 42 .C............AG....................... GCATAATGTGCCTCTAGATCCATACCTGAGTCGCTTGTTGAT 4984 39 100.0 37 ....................................... CTTCCTTTTACAAGCAAATAAACACCAAGATTCATTC 4908 39 94.9 42 C.......A.............................. CTGGAGGATAGATCCAGATAAACACAAAAATCGGATGTTCCT AG [4900] 4825 39 79.5 0 ........A..A...G.A.G...........G.....CA | ========== ====== ====== ====== ======================================= ========================================== ================== 6 39 94.5 39 GTGATATTGTTGTTGTTGAAGGTAATTTGTGAGTTGTTG # Left flank : CACCAACATGAACATTATCCAAACTACTAGTGTTAGTAATATTCAAAATATAATGATTATTAGTATTAATGCCAAAAATTTTATTAGCTATATCGTTAACTCCCCACCAATTATAATCAAAACTACTGTTATCATCATGATCAGTGATATTAACACCAACCTGTGATATAATACGATTATATTGAACAGTTACATTAACCAACGAACCAGCACACATTGCACTGAAATTCAAACCAGTACCATTCTCAGCATAAATAGTATTACCTCGAATAATAAAATCACTAATATCAGTAGGCATACTACTCCACTCAGAATCAAAATAGAATCCATCACCATTTGTAGCATTAATAGTATTATTTAAAAACCTAACACCACTGATATTACCCTCAGTAGACAAAAAATACACACCATAAGCATCACCAGTAATATTATTCTCAGTAAAGGTTATATTATCGATGTTGACATTTGTATTCAGAAGAACACCATATTCAAGTGTTCCT # Right flank : CTCCCAGATGCACCCACACGAACACCAGATTTTGTCCCTATGATGTTGTTGTTTTCAAAAACCAAATTAATAGAACGACTCATAGTGCCAAAATAAACACCATCAGAATCACTCGTATCATTAGCAGTTATATTATTATTAATCAAAGAAACATCAATAAATATATGTGGAGCATAAGCATTAACATAAAAAGCACCATAATTAGCTATTGAAGAAACGATAACATTGTCCTTAATAAGTATATTAGTTAAATTATCACCATAACTAATTAAATTAATACTACTATCTTTAGTTGTAATATTATTCCCCATAATTGTTAAATCACCATAACTTGATTTTATAGCTGTATCATAATCAACAATAGTTAAATTAATAATACGAACATTAGGAGCATTAATATTAAACAAAATACCAGACCCAGAACCATTTATTACAGGATTATTTTTACCTTGAATAGTAACATTACGAGCCACATTAATCTGACCTAAACTATTGTATGA # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATATTGTTGTTGTTGAAGGTAATTTGTGAGTTGTTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 153-4176 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWMT01000262.1 Methanobrevibacter filiformis strain DSM 11501 MBFIL_contig000262, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 153 30 100.0 35 .............................. TTTGTTTTCCAGTTCCCTGAGCTCTTTACTTTGTG 218 30 100.0 36 .............................. GCTCTTGATATTGTTTCCATCATCCCGACTACTTGG 284 30 100.0 36 .............................. CTTTTTTAGTTAAGTTTTTCCTTAAAAACTTATGGA 350 30 100.0 35 .............................. GCTATTATGATGTTAGTGTGGTCTTTATACTTATT 415 30 100.0 35 .............................. GCTATTATGATGTTAGTGTGGTCTTTATACTTATT 480 30 100.0 35 .............................. TTTTCATTTAAAGTGTCTAAGTCTTGTTTTTCATA 545 30 100.0 37 .............................. AGACTCCTACTAACTATATTTTCAATATCCTTCTTAA 612 30 100.0 34 .............................. GAAGGCATGTTAACCTATTTGATATATCATAATA 676 30 100.0 34 .............................. GCAGCTTTTAATTGCTCAACAGACACTCTAAACG 740 30 100.0 36 .............................. ATACCATATTCAACATAAGCTGCGTATGACACACGT 806 30 100.0 36 .............................. ATTTGAGCAGGTAATGTTTCCGCTCCCGCTTTTTTA 872 30 100.0 35 .............................. TAATAGTAATTCATTTGATATAGAAATGCCTAATA 937 30 100.0 37 .............................. CCTATCCTTTTATTCTAACATGTGAGTTCAAACTAAC 1004 30 100.0 36 .............................. CGTTGAAAACCTAAGAGACGGTGTTGTTGTCTCAGA 1070 30 100.0 35 .............................. AATAGGGGATGCCTTCTTTTATTCTAACTTCTTGT 1135 30 100.0 37 .............................. TCAAATTCATTATAATCAACCCCGTCTATCTTCTCTA 1202 30 100.0 35 .............................. GAAAACAAGCTTATAGCATTTCTCATCAAACACCC 1267 30 100.0 35 .............................. GTTTTTTCCTTTAGCTCTAAAGTACCTATTTTAGG 1332 30 100.0 32 .............................. CTTATAAACACATTATTTACATTTTTAGCATA 1394 30 100.0 34 .............................. TGTAAAGACCTGGTACCGCTCATCATACGTTGGT 1458 30 100.0 36 .............................. ACTTTTCATAGGATCTATAATTTTTTCTTTATAATT 1524 30 100.0 35 .............................. TCTTCAATAGCTTCATTAAGATATTTTATCGCTGT 1589 30 100.0 35 .............................. AAAGCAAGCATATCTCTCATAGATAGCTTCATATC 1654 30 100.0 36 .............................. AATCCTCAGCATATAACTTACTACCTTGGAATTTAG 1720 30 100.0 34 .............................. CCTAATGTATCACCGTTTTCCTTCAAACTCTCTT 1784 30 100.0 42 .............................. CTTTATTAACATTAGGATACCATAACATCTTTGATATTACTT 1856 30 100.0 34 .............................. AATCTATCAGCTAACTTTAATGCTTCCATACCTG 1920 30 100.0 33 .............................. GGAAAGGTATAACCTCTTATATGATAACAAGAT 1983 30 100.0 36 .............................. GCTGAAAGTTTAATTGTTGTTGGACCTAATAATTTA 2049 30 100.0 33 .............................. ACAAGCAGTTAATATATTAAACCGAGTGTTTAG 2112 30 100.0 36 .............................. AATACTCATTTATTTCTTGTACTAATAACTGAGCAT 2178 30 100.0 36 .............................. ATAAACCTAGCAAATGAAATAGAAAACGGATTAATG 2244 30 100.0 35 .............................. ATTAATAGCTCTTGGAGTTCCAACAATTAAATTTA 2309 30 100.0 34 .............................. CTCTCATTAACTGATTGTCTATATAAAGATGATG 2373 30 100.0 37 .............................. ATTCAAATATCTCAGGATAATCATCTAAATTGGCACC 2440 30 100.0 36 .............................. AATATTGTGTCGTTTATAAAGTTAAGTTCCTCGACA 2506 30 100.0 36 .............................. TTTAAGTATGAATCTAATGTTTTGATTACAGATAAA 2572 30 100.0 42 .............................. CTTTATTAACATTAGGATACCATAACATCTTTGATATTACTT 2644 30 100.0 34 .............................. AATCTATCAGCTAACTTTAATGCTTCCATACCTG 2708 30 100.0 33 .............................. GGAAAGGTATAACCTCTTATATGATAACAAGAT 2771 30 100.0 36 .............................. GCTGAAAGTTTAATTGTTGTTGGACCTAATAATTTA 2837 30 100.0 33 .............................. ACAAGCAGTTAATATATTAAACCGAGTGTTTAG 2900 30 100.0 36 .............................. AATACTCATTTATTTCTTGTACTAATAACTGAGCAT 2966 30 100.0 36 .............................. ATAAACCTAGCAAATGAAATAGAAAACGGATTAATG 3032 30 100.0 35 .............................. ATTAATAGCTCTTGGAGTTCCAACAATTAAATTTA 3097 30 100.0 35 .............................. CTCTCATTAACTGATTTACTATATAAGCTGTTATA 3162 30 100.0 37 .............................. GTTATCTTATTAAGAACACTACTCATTAGAGTTTCCT 3229 30 100.0 35 .............................. AAACCCATACAAACTTGAAACAGAAAGTCCTTTGT 3294 30 100.0 37 .............................. AAACGACAGCGAGGGTTTTATATTAGAATTATTAGAG 3361 30 100.0 33 .............................. TGAAACGTTTTAGGCACATCCCTATGTATAGTG 3424 30 100.0 35 .............................. TCAGCTGGTACTGGTAGATTACTATTAGCATATCA 3489 30 100.0 35 .............................. CACACCATAACATAAAGCCATTTTATCCAATATTT 3554 30 100.0 37 .............................. ACGAATTAACAAAGAATGCACAAACAAGTTTAAGAGG 3621 30 100.0 35 .............................. ACGTGTTCCAGATAGCTATCCAGTATATTAACATT 3686 30 100.0 37 .............................. TACATTTCAATGGCTTCAACTAGACTATCTAGCCCTT 3753 30 100.0 36 .............................. TTATGGCAGGTCTCATATAAGGTTGTTCAGGCCCAT 3819 30 100.0 35 .............................. CTATTATAGCTATGTGGTATATGATAGGTATATGA 3884 30 100.0 35 .............................. AAACCCAGTTATCACACAAACAAACACCCCCCCTA 3949 30 100.0 36 .............................. TCTATTAATGAATCTAGGCCATTATATAACTGCACA 4015 30 100.0 37 .............................. TGAAACGTTTTAGGCACATCCCTATGTATAGTGTCGG 4082 30 100.0 35 .............................. AGCTATTAACATATAGCCCAGGAGACTCTTCTAAG 4147 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 62 30 100.0 35 GTTAAAATCAGACCAATATGGAATTGAAAT # Left flank : AATAGATATTCAATGAAAAACATAGACAACAAATAAAAAAAACTACAAAAAATAATTTACAATCTAACCACAACTAAGAAAATTCACTGTCATCCATCAACTGAAAAATTAATTATTGCACAGCCAAGTAAGAACAAATCACTCATATGATGG # Right flank : TACAAACATTAATCATTCATATATTTTAATTTATTAATTATTATTCCAATAATGTTTCGAATATTAAATATATTATTTATAATATCAATAATAATAGTGTATATATAAACAATAATTTATATGTCATTCTTAATAAGAAAAGAAGAACGAGTTATTTTAAAAAATATTTTATTAAGGTTCCTTACTAAATTTAATTTCATAATTTAAATTAACAAGGTTCCTTACTAATTTAGTAATATTAATTTAAAAAATAGTATTATTTTGAATATATTAAGGTTCCTTACTAAATATTTACATACAATAATTACTAAATAACAAGTATTATATATATATTAATATAACATTTAAATAATAAACATCTAATTAAATGGATATTAAATAAATTCTAATTTAAGCAAGAGAGAACATTTATGAAAAAATTCAAATTAAATTCAAGTTACAAACCTTTAGGGGATCAGCCAAAAGCTATTAAATCATTAGTTGGAGGTATAAACAAGGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCAATATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [68.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 5047-5304 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWMT01000279.1 Methanobrevibacter filiformis strain DSM 11501 MBFIL_contig000279, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 5047 38 100.0 37 ...................................... CCACCTTTACCTGGAGTGACTCCTGCAACAATATTAG 5122 38 100.0 35 ...................................... TTTGGTAAGCATTTATTCCATTTCTTCCAAAACCA 5195 38 100.0 34 ...................................... TTCTGGAACTGTGACCGTAAAATATTTGCAGCTA 5267 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ===================================== ================== 4 38 100.0 36 TATTGCACAAAGGAATCTATTAAAACAAGGATTTCGAC # Left flank : AACATAATTTGATTAATTATATTTTCCTCAAATAAATTTATGTTAATAGAACAGGTTTTTTATTCAATACTTTTGTTTTTTCCCTTTTAATTTTCAATAGTAGAACTAATATGAATCTTGATAATATTGATGTTTTATGATAGTTATTTTTCATATTTACTAAGCATAGAACTATTTTTTAAAATAGCTATTTTGTGCAAACTTCCTCTATTTTTTGAGAGTAATACTTTAAAATAATGATTTATTAAAAATTTATTTTTATATTTTTCACCCTTTCATTGATTAAATAAATAATTGCTAAATAATTCAACTTTTTCTAATAGTTAATAGCTATTTTCAATTAAATAACAATTTATTTTATATTCTATTAATAGAAAACTATTTATATCATTAGTGCAATACTATATATAAGGTTGTCTTATTTTTACTTTTGCACATGATGACCTATTAACGCAAACTTTTGTGCCTTTTTTTACACACTTTTAAGGAAAATTTTTTCC # Right flank : CTCTACCATTTTTGTTATTGCTTCTTTTTTATTCATAATTGCATAAAGGGATTTAACCTCTATTTTAAGGAGCTAGGAAAAAAAGAAAATGGAAAATATATGAAAATATAGGGTTATTTATGAAATTAATTATGGGTCTGATCAATGTATAATTAGATTGTTAAATTTAGATAAAAGATGAAGAGTATATAAATATTAAACTTTCAATGAGTTAATTAGAAATAATATGGAGAATATAATAATAATTATTCAAATATTATTATTCGACCCAGATCAAACTCTTTAACATTTTAACTTCTCTAATAAGATTATTCAGTTGTTTATGAGTAGATTCTAGCTTCATTTTCAATAAAATATTCTCTTGTTCAATACTAATAAAATTCTTATCATTATTAAGATTTTCATTAATGGTTAAATAAAGAATAATTTTCTTATAATCTTTTAATAAATCTTCTTTATTAATCATCTGATAACTTTCAAGTATCTTAGACTCTAAACTA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATTGCACAAAGGAATCTATTAAAACAAGGATTTCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //