Array 1 501-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLXV01000009.1 Streptococcus uberis strain OLC4459-A3 k127_36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 500 36 100.0 30 .................................... AATCCAACATTATCAGATGACTGACAATAC 434 36 100.0 30 .................................... GAGCAGACTGCGAGAATAGCAGAACTGACG 368 36 100.0 30 .................................... TATCTGAGACCTCATTAATCCCAATTTCAA 302 36 100.0 30 .................................... ACTCAGTAAGTTCCGTTGAGATTTATGTAG 236 36 100.0 30 .................................... AGACCAGCAGTCGTCAATTGATATGATTTC 170 36 100.0 31 .................................... CTTAATACTTTTTATAAAAAATAAGGTAACA 103 36 100.0 30 .................................... GTGACATCAAAATGAAAAGTATCACATTTG 37 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 8 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Left flank : ATACTGAAGAAGAAAGAGAAAGAG # Right flank : CT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 25-257 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLXV01000028.1 Streptococcus uberis strain OLC4459-A3 k127_102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 25 36 100.0 30 .................................... AATGCAGAGTCGCCAACTCTCAGATTTACT 91 36 100.0 30 .................................... TTTAGGATGAGTTTTCATCAAAGTTCCGCT 157 36 100.0 30 .................................... CGCTTAAGTTGATACTTCGTGCGTCGCAGT 223 35 83.3 0 ................G....AT....-G......T | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 95.8 30 GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Left flank : CGTTTAATGTGTAGACTTCCGAGAG # Right flank : TTACATAAAACAGCCACTTTCTAGAGTGGCTGCTTTTTACTTACTTTTCTTATTTTTGCATGATTTCTTTGATTTTGTGTGAGTTTATCCAGTCTATTATTTAAAATGTATAATTATTAATAAATAAGGCGTAAAAATGTATATATTGAAATGCGTTTTCAGGGTTTTTCTTGTTTTTTTGATGCTTTAAACCCTATTAAAATAGGCTTTTATAGTAATTAGATTTTTTAGTCAGTTTTTTCTTTGCAAACCCTTACATATGTGTTATAATGAGAAAAAATAAGAGGAGAGATTCCGATGGAAAAAACATTTTTTATGATTAAGCCTGATGGCGTTCGTCGTGGTTTGATTGGAGAAGTGCTTCAACGCATTGAAAGAAGAGGGTTTACTCTTGATGCTTTGCAGCTAGTTACTCCGAGTCGTGAGCATTTGGATGAGCATTATCATCAATTGAAAGATAAAGCTTTTTATCCTGGTTTGATTGATTATATGATGAGTGG # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1-564 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLXV01000011.1 Streptococcus uberis strain OLC4459-A3 k127_42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 36 100.0 30 .................................... CACTAAGTAATTCAACGATGCCTTATTATG 67 36 100.0 30 .................................... AATAATTTGTAGTTCTTCAATACCAGATAA 133 36 100.0 30 .................................... CATTCAATTTCTTTAAAAATGGCACTCAGA 199 36 100.0 30 .................................... TCCAGCAGGTTAATTTATTTTATGTTTAGT 265 36 100.0 30 .................................... GTATGTAGCAACAATTTCCGCATCTAATCG 331 36 100.0 30 .................................... TAACTCAGTTGATAAAGCAGCAACGACTGC 397 36 100.0 30 .................................... ATTACATACTGAAGAAGAAAGAGAAAGAGG 463 36 100.0 30 .................................... AATCCAACATTATCAGATGACTGACAATAC 529 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 31 GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Left flank : | # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 721-26 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLXV01000001.1 Streptococcus uberis strain OLC4459-A3 k127_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 720 35 97.2 30 -................................... TACTACATAATTAAATCCGTTAAAGATTTA 655 36 100.0 30 .................................... CTACTATCGTTTCATTGATATGCCTAATCT 589 36 100.0 30 .................................... TTGTTGGCTAAGGGTTTTCATAGCTTGCTT 523 36 100.0 30 .................................... ATCGTTTATTTTTTGCGCCATCCTGTTATC 457 36 100.0 30 .................................... ATAGCTATCTTCTACCCATTGATTTGATTG 391 36 100.0 30 .................................... TTGTGAATGGATGGATTTTGCAAAATGCGG 325 36 100.0 30 .................................... TCATCTGTTTCGATTCCTGTGAATGCAGAT 259 36 100.0 30 .................................... ACATTGGATAAATCTTTATGCATTCGGAAC 193 36 100.0 30 .................................... TTCATAATTGCATAAGCAGTGTTGTAGTGT 127 36 100.0 30 .................................... CACTAAGTAATTCAACGATGCCTTATTATG 61 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Left flank : | # Right flank : CAATAATTTGTAGTTCTTCAATACCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 26-656 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLXV01000002.1 Streptococcus uberis strain OLC4459-A3 k127_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 26 36 100.0 30 .................................... GTGCTTATCACGATGGCTCAAACGTATACA 92 36 100.0 30 .................................... ATCTACACCTACACAGATTGTAAAGCCTAC 158 36 100.0 30 .................................... AAAATAGAAATCGTTCAATTATTGCTTTAT 224 36 100.0 30 .................................... TTGTTTATGAAACAAGGCACTGGAAAGACA 290 36 100.0 30 .................................... GAACTTGTAGATAGCGGAATGTCTGACAAA 356 36 100.0 30 .................................... TGATTATACAAAAGGATTGTTTCGTGTCGG 422 36 100.0 31 .................................... CAGGTTGTAAAATACAAAGTTGTAAAATACA 489 36 100.0 30 .................................... AAGATTAGCTACATAGTCGGAGTCCAAGAA 555 36 100.0 30 .................................... GAGGAAGAAGTTGTATTGTTTTCTTATTCT 621 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 10 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Left flank : CCTTTTGGAAAAATTCTTCCACGAGG # Right flank : GCGCTGAAGCTAGAGTGTCTGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [25.0-18.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 787-26 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLXV01000012.1 Streptococcus uberis strain OLC4459-A3 k127_44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 786 36 88.9 30 ....G.AG........................G... TTCATGATTGCATCATCAGTGGTGTTGGAT 720 36 97.2 30 ...........................G........ CCGATGGACGAAAACTCTCCAATGACTAAC 654 36 97.2 30 .G.................................. AGCATACGAACTAACTGCACCTGTCCATTG 588 36 100.0 30 .................................... ATAGATTGTCCCCCAGAAATAATCAGAGTT 522 36 100.0 30 .................................... ATTAGTCGTGAAGTTAGTGTTGATTATCGT 456 36 100.0 30 .................................... TTTTGCTAAATACTGCGACCGTCACTAGTT 390 36 100.0 30 .................................... TCACGCTTATTTCGCAGTGGTGCACTGCAT 324 36 100.0 29 .................................... TAATTCCTCCTTTCTTAAAGTAATGACAT 259 36 100.0 30 .................................... TTTACTCGTTTAATGTGTAGACTTCCGAGA 193 36 100.0 30 .................................... AATGCAGAGTCGCCAACTCTCAGATTTACT 127 36 100.0 30 .................................... ATTCAGTCTCTAATCCATTTTTTCGCTTAA 61 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 98.6 30 GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Left flank : TCGTAGGGATTGAGTA # Right flank : CCTTGTCTGGAGCAGGACGAGCAATC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [18.3-16.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //