Array 1 124912-126187 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNDX010000007.1 Parabacteroides distasonis strain 1001302B_160321_D7 NODE_7_length_237470_cov_30.8113, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 124912 47 91.5 30 A......C.......................GA.............. TTCTCTGCGTTTTGGTTCAATGCGATTGCA 124989 47 100.0 30 ............................................... TTCCTTTTCCACGTTATCGATGTAGTATGT 125066 47 100.0 30 ............................................... ACAGAGGATTTATAACCCGGTGAACGAGCC 125143 47 100.0 29 ............................................... TTTTAGGATGAATTAGGTAATATGTTATG 125219 47 100.0 30 ............................................... ATGGCTTCTGGTTCGCCGGTTTGTTAATAT 125296 47 100.0 30 ............................................... CCGTTTCAGGTATATATGGAAGACCGTCAT 125373 47 100.0 30 ............................................... ATACATGCGTATATACACCAATATACCCCG 125450 47 100.0 30 ............................................... CTGTGCGAGAAGATAAGGGTAAAAAGAGAT 125527 47 100.0 30 ............................................... TATCCGATACTTTATCCTCTGATAACTTTG 125604 47 100.0 30 ............................................... CTTGCTTCTTCTCTCGTCATATCACTATCA 125681 47 100.0 30 ............................................... CAGGAACGACTTCCTTTGATACTTTAATAT 125758 47 100.0 29 ............................................... CGGTACTACAGCCTTGTCTACTTTTATAT 125834 47 100.0 30 ............................................... GTTAACGTTTTCTCACTTGCTTTCTTTACT 125911 47 100.0 30 ............................................... CCCCTTGCCGCTGGGCGCTCCCCGACCGAT 125988 47 100.0 30 ............................................... AAAAGAAAAAGTTTATGTATAGGGTTAAAA 126065 47 100.0 29 ............................................... ACAATGGAAGATAATAGTGAATATGCAAT 126141 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 17 47 99.5 30 GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC # Left flank : TCTAAACGCTTGGAGAATCGATTATTTCGAGGCAAGGTACGACTTGCTTCCAAATTCGAAAATATTTTTTCACAATAATCTATTGAACAACGCATTACAAATTTTCACTGATTTATTCTAGCGAAAGATTTCGTCTTCTGTCAACCTCAGTCGGACAAACAAGCGACTTTTTATCTGAAAACAATAAGCTTTTCATCCGAAAACAATCGGATTTCCGGTCGGAAACAATAAGGATCGCAGTCGAAAACAGCATACAACGCCGTTATAAACACCTTACTATTGGATCATAATCCCTCTACAAAGCCTATTCATACACTAAAAAATGGCGAAATACGCTGTTTCCGCCTTCCTTTTCTCTCTATTTTCGCATTTCCATAAAAAGCCTTTATCAGCTAAAAGTCTCCATTTTGAGCAAAATGACAGAAAAAGAGATATTTTGATGACATAAAAGAGAATGGCTTACTTTTTGGTGTAGCTGCCCCAATATTTTGCAATATTTT # Right flank : CATATTATCTATTAAAAACTATTAATCAATGGATTACAAAGCACATCAGAATAAAAAAAACAGATATTGTTTCCATTAAAAATCCCGCTTGACAGCGGGATTTTTCTTTTAGAACAACTCCAATTGCTGTCCAGGAGTATTCACTTCCACCGTTTTCTTTCCATAAAAAAGTTCAATATTCCCAAACTGCTTATCCGTAATACACATGATTCCGACATTCCCATGCTCCGGAAGAAAAGATTTAACTCTTTTTACATGTACGGCCGCATTCTCGCTACTAGCACAATGGCGGACATAAATAGAAAACTGAAACATCGTAAATCCATCTCTTTGTAGATTTTTCCTGAAATCCACATACGCCTTTTTCTCCTTCTTCGTCTCGGTAGGCAAATCAAACAACACAAGTACCCACATAACACGATATTCGCTAAACCGATCCATATTACATTTCCGGATAGGAGATTCTACGCAATTCGCCACTAAAGCACTTATACAGAGAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.10,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 51975-51544 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNDX010000015.1 Parabacteroides distasonis strain 1001302B_160321_D7 NODE_15_length_127569_cov_33.3808, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 51974 36 100.0 29 .................................... TCACAAGTAAGCATCTTATCATACTTACT 51909 36 100.0 30 .................................... CGTTCATTGGTGAACTCTGTTGTATCAAGG 51843 36 100.0 30 .................................... GCAAGCTGTTTTTGTGCGAATAAGCTCATC 51777 36 100.0 30 .................................... AGAATTTGTTAATATGTATCCTTCTCAATG 51711 36 100.0 29 .................................... TGAACGAGGAACTAAAACAACTTTTGGAG 51646 36 94.4 30 .......C.A.......................... TTCAACGAGCTTCAATCGGATATGCTCATC 51580 35 77.8 0 .......C.A........-...........A.TGTT | A,A [51549,51552] ========== ====== ====== ====== ==================================== ============================== ================== 7 36 96.0 30 GTTGTTTTTGCCTTTCAAACCAAAGGCTAATACAAC # Left flank : AAACAACAGGTAACTTGAACCTTATTCGGTTCGCCTCATTTCCATTGCTTCCTTCTTTGGTTGAAGCGCCTATACCTACTACACTGGCTAATACACCGATCTTTCCGCTATTTTCCTTTATTTCAGAGGTGCTGACTTGTAGATCAAACTCTACTGATGAAACAATAACACCTTCACTATTGTCTATCGTCTCAAAGTTTGTATTCTCTGCATAGCATGGATTTACCACTACTCCTTTATCTTTCAATTCATCATTTAATTCATAAACAGCTTCCGAAAGCTGGGTTATAGCGGATTTGATAAATTCTTTTAGTTCCATAAACAACAAAGCCCGCATTTCAGACCGGCCATGATCCTACTTTGCGGGCTTTTCCTTCAATGAAGTTTATCTTTTTCAAATATCTCGCATGGCCTCGATATATTTGATATCTAATCTTTTTGTAAAGATAGAATAAGTTCTTGATGAATCCAAATTATTTTCGGATAGCCACCATGCCTGT # Right flank : TTTATGCTGATGAGTCATTCGAAAGGTCTTCTAATTTTATATTTTCTATCTTCATTTTAAATTCAGCTATAATCTTTTTTGCATAGACGAAATCGTCAGAAATTTCTTTGATACATTCAGCTTCGTATTTATCATGTAAGAACATATTCCGAGTTTTAATGAGAAAAGAACTATCAATCTTTTGTTTAGTTCGTTTCTCATATTCTGTAATTAGCTCATTAAAATCATAATAATTTCCGGGAGTAGCCTTCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCTTTTGTTTAGTTCGTTTCTCATATTCTGTAATTAGCTCATTAAAATCATAATAATTTCCGGGAGTAGCCTTCTTTAAATCTGGGAACATCGATACCATAGCGATTTCGAAAGAATGAATGATAGGTATGATTTGTATCTGGGCT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTTTTGCCTTTCAAACCAAAGGCTAATACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //