Array 1 469-2478 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCZR01000343.1 Pseudomonas aeruginosa strain 42 scaffold_342, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 469 28 100.0 32 ............................ GTCCCTCGTACGATCTACCTCGGTGGGGACGC 529 28 100.0 32 ............................ CTGAACGCGATTCGGGAAATCGACATTGAACA 589 28 100.0 32 ............................ AGATTCGAAGCTATCAGGCCTACCGTCACCAA 649 28 100.0 32 ............................ TGGACGCCGACAGCCGCTACGCCAAGATGGTC 709 28 100.0 32 ............................ TTCATGGGGATGAGTCCCGCGCAGCGGGAGAT 769 28 100.0 32 ............................ ATGGAGGCCACTAATTCGCGGTACATGATCCG 829 28 100.0 32 ............................ ATCAGCATGTCGAGGCCATAGCGCATCTTGTG 889 28 100.0 32 ............................ CAGTTCTGGCGGCGGACCTTCTCCCTTGATGT 949 28 100.0 32 ............................ AGATGGAAATACCTCGCTCGTCATTCCAGGTG 1009 28 100.0 32 ............................ TCGTCGTTCCACCGCTCGCCGTTAAGCCAAGT 1069 28 100.0 32 ............................ AATTCGGCGCTGAGCTGATTCGTCACCTGGCT 1129 28 100.0 32 ............................ TGAAGAACGTGGATCGTCAGTACGACGACCAG 1189 28 100.0 32 ............................ AAGGTCGTCCGTTCGGCAATTCGCGTGCTCCG 1249 28 100.0 32 ............................ TGCAAGCCTCGGTCAAAGACACTGAGGTACTA 1309 28 100.0 32 ............................ TATGTCCGTCAAGTGTTTGGCGGGGACTATCG 1369 28 100.0 32 ............................ TATAGGAGAGATCAGCGCTCGGAGGCATCTCT 1429 28 100.0 32 ............................ ATCCAGCACGAACACCATCTGTGTAGGTTTCC 1489 28 100.0 32 ............................ AGGAAGCGCTCCAGGCTGCGCACGCTCGGCAG 1549 28 100.0 32 ............................ CGGTCAAGTCGTGGCTCTTCGAGGCGACTGAG 1609 28 100.0 32 ............................ TCTTCGTTCCGTTCCGCCTCGAGCACATCGAA 1669 28 100.0 32 ............................ CGAACCACTGGAGGTACGTGCACAGATCGGAC 1729 28 100.0 32 ............................ GTTCCGCCATCGCCGCCACCACCCGTACCGCC 1789 28 100.0 32 ............................ TCCGAGTGCCGGGTGGATGTTGTGCTACGGCC 1849 28 100.0 32 ............................ ATGCAGAGGCGGTCGATGCGCGGCAGCTTCAC 1909 28 100.0 32 ............................ CGACGCTCTGCCAGCCGCCGGCGGTGTAGAGG 1969 28 100.0 32 ............................ GCTTGCATCGCACGCCCCGCAGGAGCCACCAC 2029 28 100.0 32 ............................ GCATCGAGCATCGTGCGGCAGTCGAAAATATC 2089 28 100.0 32 ............................ TCGCTGACCGCATCTTCCCGCTCTTCCCACGC 2149 28 100.0 32 ............................ AGCTCGCGCGACAACTGAACGAGATCGCAAAC 2209 28 100.0 33 ............................ TGTTTGCACAGGCTCGCTGTGTTCTGGTTTTTT 2270 28 100.0 32 ............................ TTTGGGTCGTTCATGTCCACGCCGCGTTTGCG 2330 28 100.0 33 ............................ GCGCATGTCCATCAAGGAACTCGCCGCCAACAT 2391 28 96.4 32 ........................A... TATCACCCAAGCCCGCGACGTCGACGCGGAAC 2451 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 34 28 99.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCCTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCTCATCACAAGACCTTTTGCCCTCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACACCCTTATAAATCAGTAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 5693-4884 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCZR01000245.1 Pseudomonas aeruginosa strain 42 scaffold_244, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5692 28 100.0 32 ............................ ATCGGCGCCAGCATGGACGAGCGTATCCAGGG 5632 28 100.0 32 ............................ GACAGCTACCAGGTCCGACATATCAACGCGCA 5572 28 100.0 32 ............................ GGGAACAGCGTCTTGCTGTTGCACCGCCGCAC 5512 28 100.0 33 ............................ ACCGGCTCCTGCCTCTCCAGCTCCGCGACCCTG 5451 28 100.0 32 ............................ TGGAAGCAGGGCCAGGATGTCGCAGTCCATCA 5391 28 100.0 32 ............................ TCTGCTCTCCCGCGCCAGCCCGATATATCCAC 5331 28 100.0 32 ............................ GCTGGCGCCCTGGTCTGCGTCGTTTGCGATCT 5271 28 100.0 32 ............................ ACTTCGTGCGTGAACTCCAGTCGAGGGGATAC 5211 28 100.0 32 ............................ AAGGACACCAACCTGGTGCCGGCAAACTTCGT 5151 28 100.0 32 ............................ TCATTCCAGACCATGGCCGCTCACTACTGAGC 5091 28 100.0 32 ............................ AGAAGGCCGGGGTCCGTGTGTGGCGCATTGAC 5031 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 4971 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 4911 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 14 28 97.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAGCCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGACGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1875-1006 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCZR01000067.1 Pseudomonas aeruginosa strain 42 scaffold_66, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1874 28 100.0 32 ............................ ACGACGCCAGCCAGATTACGTCTGGCATCCTG 1814 28 100.0 32 ............................ AGCTGAAGGTCGCCACCCCCGGTAACCCCGAC 1754 28 100.0 32 ............................ ATCAAGGTCAACCTGGGCTCCGGCGCCGGCGG 1694 28 100.0 32 ............................ TTGACGCCCAGGGCGCCGACAAGGACCGTCGC 1634 28 100.0 32 ............................ TCCTCCAGAGGATTGCATCAAGGGGCTGACGG 1574 28 100.0 32 ............................ ATCTACCCGCAAAGCAAAGCCCCGCGGACCGA 1514 28 100.0 32 ............................ AACGCGTCCAACGTGCTAGCCAAGGCCACCCG 1454 28 100.0 32 ............................ AGTGATGGAAAACAGCGCCGTGACCCAACCTG 1394 28 100.0 32 ............................ AATCCCGACTTGGCGTCGTTGATAGCCACCTC 1334 28 100.0 32 ............................ ACCCAGCGCCGCCGGGATCTTCTCCGCCACCT 1274 28 100.0 32 ............................ AACATCGACGGGTCGAACTGCTCCGGCACCTG 1214 28 100.0 32 ............................ AGGGGGGGGTCGGCAGGCAGACTCACCAGCAG 1154 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 1093 28 100.0 32 ............................ TTCGACGCCGCCAGGGTTGCCGCATCGCCGTC 1033 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 15 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCRTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCRTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAASGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGCCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //