Array 1 939-9 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRBV01000113.1 Enterobacter roggenkampii strain 1-RC-17-04133 1_RC_17_04133_S24_R1_001_contig00113, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 938 28 100.0 32 ............................ AATAGGCCGGAACATTAATTTCGTTGGATGGA 878 28 100.0 32 ............................ AGGGTCGATCCACTCGCCGCCGATCGCCTTGT 818 28 100.0 32 ............................ TGATTCGTGCAGCCTAGTCTATTCCGTATAGG 758 28 100.0 33 ............................ TGGCAGACCAGGAACAAGCGCTTATACATTGGC 697 28 100.0 32 ............................ ATGCTGCGGCCCTCGTTCGTGTCCTCATACTG 637 28 100.0 32 ............................ TGAAAATCAAACTTGTAATAGAGGATTGCCCG 577 28 100.0 32 ............................ TTCTGCATCGAGCCAGCGTACTGCGCCGAATC 517 28 100.0 32 ............................ ATTGCGCGTAAGCCCTCAGCCGGGCGACCCGG 457 28 100.0 32 ............................ TGGCGGCGGCTGAATTTTTGCCGCTGGCAAGC 397 28 100.0 33 ............................ AGGCCCCGGAGCTGTACGGGCTAAACGTCGCGT 336 28 100.0 32 ............................ CCAATTCCCGCCAGGCGCAGGAGGCCGCGGCA 276 28 100.0 32 ............................ TCTGTAACGCTTTCGGGCTTACGGCATAGCAC 216 28 100.0 32 ............................ GTTCAATTTCCATAACACGGTGCCCTTGGCGA 156 28 100.0 32 ............................ AAACGTGGCTTCATCATCAGAGACTTTGAACG 96 28 100.0 32 ............................ TGTGCAATCCTTTCAGGATTTCGATCACTTCA 36 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 16 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGGCAGCTTAGAAAACGCCCTGAGTTGCAGCACTATGTCAGTTAA # Right flank : AGCACTTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 643-13 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRBV01000007.1 Enterobacter roggenkampii strain 1-RC-17-04133 1_RC_17_04133_S24_R1_001_contig00007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 642 28 100.0 32 ............................ AGTGACAAGGATTTCTTTGAACGCCTTGAGAA 582 28 100.0 33 ............................ TGTAGAGATAAAGGCGGCCAACCCGGCCAGCAA 521 28 100.0 33 ............................ TACAAAGGCCGTCGATGCCGTCTGTGTGTTGCT 460 28 100.0 32 ............................ GTCACACGGTGTCAGTGATGCGTCGACAACGA 400 28 100.0 32 ............................ AGAGACGAGGCTGAACGGCTTATCTCCTGCAT 340 28 100.0 32 ............................ AGCTCATCCGAAAAGACATGGGCTTGGCAATC 280 28 100.0 32 ............................ CGGAGGGGAAGCCATTACCCGGCAAAACCCTT 220 28 100.0 32 ............................ ACGCCCTGAGTGGCAGCACTATGCCAGTAAAC 160 28 100.0 32 ............................ AATAGGCCGGAACATTAATTTCGTTGGATGGA 100 28 100.0 32 ............................ AGGGTCGATCCACTCGCCGCCGATCGCCTTGT 40 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACGGTTTGCATAAGCTGTTTGGTGGGGTGGGCTTTATCAGCGGTATGCTGGTGGAGAAAGGGCTGCCGGGGTTTATCGCCTACGGCGTGTTGATTGGCGAAGTGGTGGCGCCGATCCTGATTATTGTCGGGCTCTTTACGCGCCCGGCCGCGCTGGTGCTGGCGTTTACGATGATCGTGGCGTGGCTGATGGTGGGATTGGATGAGACATTCGCGCTCGACAAGGTCGGGGCATGGGCGATTGAAAGCCTGGTGTACTTCTTCATCGGCTCGCTGGCAGTGGCGTTTTTAGGGGCAGGGCGGTTTGCGCTGGGGAAAACACCTGCGTGGCGGTAGGGGGTGGAATCTGTTCCGAGGGAAGGGGTCTACGGACCCTTTTTTATTGGTGAGTTTTAAGTTGTTGATTTCACAACGGTGAATTGTTGGTGGGGAAAAAAGGGTTTACGGAGAATTTTAGAGGGATTTCTTTATATCACAAGAAGATAGGTGTAGATTGTTCCA # Right flank : ATGATTCGTGCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [10.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1-142 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRBV01000016.1 Enterobacter roggenkampii strain 1-RC-17-04133 1_RC_17_04133_S24_R1_001_contig00016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1 22 75.0 32 ------..G................... AAACGTGGCTTCATCATCAGAGACTTTGAACG 55 28 100.0 32 ............................ TGTGCAATCCTTTCAGGATTTCGATCACTTCA 115 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 91.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : | # Right flank : AGCACTTCAGCCGGGTAAGCGTCGGTGGTTAGGGTCGAATGCCGAACAGGCAGTAGGCACAACGTAGGCCGGGTAAACGCAGTGCCACCCGGCAAAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACGAACGAACGTTTATTGTTTATGCGAGGACCAGATCGCCCTGCGGATGGCACGAGCACGCCAGCACGTAACCCTCGGCAATTTCCGCGTCGGACAGCGTCATGGTGCTGGTGACGGTATACTCCCCGGAAACCACCTTTGTTTTACAGCAGCCGCACACCCCGGCACGGCAGGCCGCCGCCACCGGTACGTTGTTGCTTTCCAGCGCCTCCAGCAGCGTCGTGCCCACGCGGCCAAAGAAGGTCTGCGCAGGCTGCAGTTTGGTGAACTGAATCCCGCTGGTTGCCGCTTCCGCCACCGGCGTGAAGAACTGCTCTTTGAAGAAACGGGTCACGCCGAGCGTTTTCACTTCTTCTTCGACGATAGCCATGT # Questionable array : NO Score: 4.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 15009-16239 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRBV01000016.1 Enterobacter roggenkampii strain 1-RC-17-04133 1_RC_17_04133_S24_R1_001_contig00016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15009 28 100.0 32 ............................ TCCGATATATACTGGATATGCATACAGTAGTT 15069 28 100.0 33 ............................ AGCTCATGCAGTTGCAGCAGGTGCCAGCCAACA 15130 28 100.0 32 ............................ TTCCGGCGCGTCAAATCATGAAACAGGCATTT 15190 28 100.0 32 ............................ GCCTGAGGTCAGCAGCCCGGTCATCGGGTTCT 15250 28 100.0 32 ............................ CTCCAAATCGCGCGTCGAATAGCCCGCTAACT 15310 28 100.0 33 ............................ TCTACCGTTGCCGCTACCACTGGAACATAGAAT 15371 28 100.0 32 ............................ TTCCTGCATTATCACTGCGCTGTCAGTCGAGC 15431 28 100.0 32 ............................ GGACGGGTTAATAACGCTTCCGGATGGCAAGG 15491 28 100.0 32 ............................ TGTCTGATTAGCCAGGACACGTACAGCGCCAA 15551 28 100.0 33 ............................ AGCTACCGGCGACTACACCCAAACCCGCGTTTA 15612 28 100.0 32 ............................ ATCGGGGACACCAACAACAAAGAACAGGTCGA 15672 28 100.0 32 ............................ AGCTGGGTTCCGGATCGGCAACAGCAACAGAC 15732 28 100.0 32 ............................ CAAAAGATACCACCGGCTCCGCTGATTCCGCG 15792 28 100.0 32 ............................ TGACGCTTGAAGAAAACCGCTCAATTAACGGC 15852 28 100.0 32 ............................ GGAACTGTCGGTTAATTCGGTTGAATGTGAAC 15912 28 100.0 32 ............................ TGACCAGCAAGCATTTCAGGGGTAACTGGCGG 15972 28 100.0 32 ............................ CCTTATACATGCTGTGTGGACCCTCCATGACC 16032 28 100.0 32 ............................ TGAATCGCCAGCTGAGCGTACTGGAAACCACC 16092 28 100.0 32 ............................ AAATGCAGGGCCATCAGCGCGGAAGCGGATAC 16152 28 100.0 32 ............................ ACCACGGCAACACTCTGCACGGAGCCGTCACG 16212 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 21 28 100.0 32 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : CTCCCGCAAACGCAGCCCGTTTGCCGCTGTCTCGGAGCCTGGCTGGAAGAGGTGAAATCCGGCCTCACAGAATCAATGCGTGATTTTCAAGTGTTGGAATTTGAGGACGAAGCGGAACAACCGCGACAAAAAGAGTGGCTGCTGGAAGACACCGAAACGAAATGTGATTACTGCCGGGCGTTGAATCATGTGCTGCTGGTGTCGCATTTTGATCCCAATATGCTGCCGCACCTTACAGGGCTACTCCATGATATTGCGCATTCGATGGCTGCAGATGTCGTTGCGCCTCAACGTGCAGAAACGGTAGTTCACATTATTTCCTGAATGTAATTTGTGGCGTCGGTGACAGACCACCGTCGCCACTGGCTTGACCCTTTTTTTTGATGATTACGTAACTTATTGATTTATAGGATTCTAATTTACGAGTTAGAAAAAAGGGTTTTATGAGCGAAATTTGATTATTTTCTTTTCTAACAATAAGATGGCGTGGTTTCTTTTCA # Right flank : AAAGGCCGCCAGGCTTTGATGCCATGGAAATGGCGTCGCTGCCACACGGAAAGCACAAGTAACAATCTCTCACAAATATTCACTGCGTCGATTTAAAAACGCAATACCATCATACCCACGCTCTCCATTTTCTGATTAAATAAAAATTCCATTCAGGAGTTAATTATATTGCTATTGATATATTATTTGTAAGAATGATACATCAAAGAAAAAAATAATTTTTTGTTTAATTATCACCGAAATTTCCATTCATTTGATATCTATCACATTTGCATTTGTCTTATCTCCGATAACATACGCGCATTCAACACTTTGAAATAAAAGCCGTTGCCATGCCTGCAAATAGCATCACCCCTACAGACTTAAAAACCATCCTGCATTCAAAGCGCGCCAATATTTATTACCTGGAAAAATGTCGCATCCAGGTGAATGGCGGGCGCGTTGAATATGTCACCCAGGAAGGCAAGGAGTCGTTTTACTGGAATATTCCCATCGCGAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 25793-26422 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRBV01000016.1 Enterobacter roggenkampii strain 1-RC-17-04133 1_RC_17_04133_S24_R1_001_contig00016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 25793 28 100.0 32 ............................ TTCCCGTCAGCTCCACGAAACGGAGCCCATAA 25853 28 100.0 32 ............................ TGGCCGCCGCGAACATCCTCCCGGATGAAACT 25913 28 100.0 32 ............................ CGAGTGGGCACGAAAACAGGATATGTACGTAT 25973 28 100.0 33 ............................ CATGCTTATAAAGCCTCTTGTCGTCAAAATCCA 26034 28 100.0 32 ............................ TCCAAAAACGGTATCCGCTATCCGTTCATTAA 26094 28 100.0 32 ............................ ACGCAGCGCGAGCCAATTCCTCCTGTTTCCTT 26154 28 100.0 32 ............................ AAGCGCCTGGCGGGCGCAGAATTCATCACTGC 26214 28 100.0 33 ............................ ATTCTGTATCAGCCGGATAAGTATCACCTGGAA 26275 28 100.0 32 ............................ GCTGGAATCAAAGTGATGGAGTGAGTATAAGG 26335 28 82.1 31 A...A......C...C......C..... ATAGAAAATAAGGCCTAACAGTTCTCGCACC C [26359] 26395 28 71.4 0 ....A...T..A....A....CCT...G | ========== ====== ====== ====== ============================ ================================= ================== 11 28 95.8 32 GTGCTCTGCCGTACAGGCAGCTTAGAAA # Left flank : AACGGGCCACGCGTTCGCTCTCGTCGGGCGTTAACGTCCGTCCCGCGCTTTTGCGGCGGGCCACGTTACGTTCGTTGATACCCGTGACACGCAAAATGTCCGCTTTCGACATGGACGTCCACTCGTGGATGTTGTCGAGCACACTGACGGGTAATCCCTGATTGAGAAATTCAATCAACCGCATACCTCGGTTGGCGGGTAAACCGGCGTAACGCCAAAGTGCGTTATCAGCAGGTTTCTGTGCGGGGATCCATGTTCTCATGTCACCTCCTGAGTAATGTCATTTGTCATGGGTAAGTATAGCCATTTGTCAGGGTGGGTGGAATCGGTGTTTTTGTGAGGGGGATTGATGCGAAGAAAGGTGTTTTGACCCTAATTTTTAGCGTTTGTGTAATTTATTGATTTTAAATGAGTATTCTTGGTGGGTAAAAAAGAGGGTCAGAGAAGATTTTTTAGCTTTTTTTGTATGCAAATCAGAAGGGTGTGGAGATATTATTTCA # Right flank : GCTGGAACGAACGGCTAAATAATTGTTCAAATAATCAACTGCGACACAAAAAAATAAGGCCGGGATTAACCCGACCTTTTAAATATTCATCTGCCATTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTATTAGGTAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGTTTGAAACGCAGCAAAACAGTTTCGGCGCATTGCCCAAGCGTCACGGTACAACCGAACGGAAAGCGCATTCGTAAAGGGGATACAACA # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //