Array 1 9096-11870 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCVU02000078.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0144 NODE_78_length_22413_cov_18.995310, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9096 29 100.0 32 ............................. GGAACTGGTCAGCGGCGAAACAAAATCCGTGA 9157 29 100.0 32 ............................. CTATCGGCAATTTTCATCAGGCCCATTGCAAT 9218 29 100.0 32 ............................. GCGTCCAGCATTGCGCTAATAAAACTGGCCTG 9279 29 100.0 32 ............................. CCGGTCATAACAAGTGGCTTCGACGACCCTTT 9340 29 100.0 32 ............................. ATTGACGATTTTTCGTTAATAACGTCGTTATC 9401 29 100.0 32 ............................. TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 9462 29 100.0 32 ............................. CCCTCGCGCAAAAAGCGGTTGCTGTCGTTGAC 9523 29 100.0 32 ............................. AATCTGCCAACAGGCGCTCTGTGTATCGGCGC 9584 29 100.0 32 ............................. CTCCCTCTCCGCGTTTTTGCGTCGGCTGGGGA 9645 29 96.6 32 ............................T TTACGAGTTGGACGGTGAGTTTTATCACCGCA 9706 29 100.0 32 ............................. ATCCGCAGCATTACGTTGACGAACAAGCGAGA 9767 29 100.0 32 ............................. TTTCCATTTTAACACCTGCTTAATTAAGAGAT 9828 29 100.0 32 ............................. AGATTTTGCAGTGAACCACGACCGATGACGGA 9889 29 100.0 32 ............................. GCGTGTAAAATCACAGGCCGTCAGCCTAACGA 9950 29 100.0 32 ............................. CTGTCGCAAAAGCGGGTCTTATGTCTGCGGGT 10011 29 100.0 32 ............................. CCCCTGAGCGTTCAACGGCAAATAGCGGACAC 10072 29 100.0 32 ............................. TATACAGGGCGTTACCCCCAATCGAGCAGCGC 10133 29 100.0 32 ............................. GGGATCGGCGTCTGTGAAATTCTGTGGAATAC 10194 29 96.6 32 ............................A ATATTTAAAGATATGCAGAGAATTCTTTTGGC 10255 29 100.0 32 ............................. TGCGAATTTACCGTCGGCAAAACCGCGCTGAT 10316 29 100.0 32 ............................. CCAATATTCTCCTGATTATTCCGTTTATTTCC 10377 29 100.0 32 ............................. GGTTCACTCAGTGGAGCCTTCCACCTGATAAG 10438 29 100.0 32 ............................. ACGCGAACGCGGATATAAACTCAACAGCGCTC 10499 29 96.6 32 .............T............... AATTCCGTTACTATCTCGACGACCCGCGCGCG 10560 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 10621 29 100.0 32 ............................. CGGGGTTTGCCAACGGGGGTTATCTGGTATTT 10682 29 100.0 32 ............................. TTGCGCGCTGAGCGGGCAGAGTTACAGGAACG 10743 29 100.0 32 ............................. GCCGTCGCGATGGCATCAGGCGTGGTGGCCGT 10804 29 100.0 32 ............................. ATCGAACAGATGCGTCATAGCGGCATGGGCGT 10865 29 100.0 32 ............................. CTGAATAAACCTGTCCAGCTTCTGCCACTCTT 10926 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 10987 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 11048 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 11109 29 100.0 32 ............................. AATTCCGTTACTATCTCGACGACCCGCGCGCG 11170 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 11231 29 100.0 32 ............................. AAAGCGAACGATGCGCTGAAAACGACAAAACA 11292 29 100.0 32 ............................. AATAACTCCGTCGAGGTTGAGCGCGTTCTGCA 11353 29 100.0 32 ............................. ACTGGTATATCACCAATCATGAGCAATTCTGG 11414 29 100.0 32 ............................. ATTTGCCGCTTCACTAAACCGCGCGCCGGTGC 11475 29 100.0 32 ............................. GTCTGGCCGGATGTGGTCGCGGGTTGGAACAG 11536 29 100.0 32 ............................. TACGACGTCGCCGGGGTAATCGGTTTTTTGTT 11597 29 100.0 32 ............................. ATCGCCGTGTTGGTCAAATATATGACGACTAA 11658 29 100.0 32 ............................. TTTATCGAAAATCAATGTTCAACTCATTGTTT 11719 29 96.6 32 ........G.................... CCGGAAAACTATCTCTATCGCAGGCTGGATAT 11780 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 11841 29 96.6 0 ............T................ | A [11868] ========== ====== ====== ====== ============================= ================================ ================== 46 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGACTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGGGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCTGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8255-7616 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCVU02000098.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0144 NODE_98_length_13500_cov_16.775294, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8254 29 100.0 32 ............................. AGCACCTCGGGGACGATATTATTGGGACTATA 8193 29 96.6 32 A............................ GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 8132 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 8071 29 100.0 33 ............................. TGCCGCGTGTCCGCCCCGTTGTCCAGCATCTGC 8009 29 100.0 32 ............................. AGTTGAGTAAAAAATCATGACATCACGCTACA 7948 29 100.0 32 ............................. CCGCGCTTATTGATCAGGAGAAAATAAAAAAA 7887 29 100.0 32 ............................. GGTCCGGTGTGGTCTGCCGAACCCGGCACCAG 7826 29 96.6 32 .................G........... ATGATGCGCAATTGCCGCCGTCGTCGTTGAGT 7765 29 96.6 32 .................G........... GAAGAGGCGAAGTCAGGGCGAGAGAGGCTTTG 7704 29 96.6 32 .................G........... TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 7643 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.2 32 GTGTTCCCCGCGCCAGCCGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAACGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAATTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATTCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCCGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //