Array 1 840433-843082 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015500.1 Klebsiella pneumoniae strain SKGH01 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 840433 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 840494 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 840555 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 840616 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 840678 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 840739 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 840800 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 840861 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 840922 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 840983 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 841044 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 841105 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 841166 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 841227 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 841288 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 841349 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 841410 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 841471 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 841532 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 841593 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 841654 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 841715 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 841776 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 841837 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 841898 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 841959 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 842020 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 842081 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 842142 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 842203 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 842264 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 842325 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 842386 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 842447 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 842508 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 842569 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 842630 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 842691 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 842752 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 842813 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 842874 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 842935 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 842996 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 843054 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGCAAACCAGAAACGTTCAACTTCCTCGGGTTCACGCACATCAGCGGGAAAGATCGCAACGGCAGGTTCATGCTGATACGAAAGACCCGCCGGGATCGGATGACGGCAACTCTGAAAGCCATCAAAGACGGTCTGCGAAGGCGCTGGCATTACTCAATCCCGAACAGGGAAAATGGCTCAGGAGAGTGGTTCAGGGATACCTGAACTATCACTCGGTACCGGGCAACTTCCCCACCATGCAGAAGTTCAGGACACACGTAACAAACCTCTGGCGCCGGGCGCTCAGGCGCAGGAGCCAGAAGGATGATACGACCTGGACGAAAGCAAACAAACTGGCAGCCGCATGGCTACCAAGGGTTCGGGTTCTTCATCCATGGCCTGTGGAGCGGTTCACCGCCAGACACCCGAGGCAGGAGCCCGGTGCGTAAATCGCGCACGCCGGGATCTGTGCGGGGGGTATCCGGTAACGGGTATCCCTACCGCGACAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7545-8657 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015501.1 Klebsiella pneumoniae strain SKGH01 plasmid unnamed 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7545 29 100.0 32 ............................. AGCAACGTTTCCGGATTATATGGCTGGAACGT 7606 28 96.6 32 ..........-.................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 7666 28 96.6 32 ..........-.................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 7726 29 100.0 32 ............................. TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 7787 28 89.7 32 ..........-.CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 7847 28 86.2 32 ..........-.CA..............C CTTAGAGAAGCAAAAAAACCACCGAGGCAGGG 7907 27 93.1 32 ..........-..........-....... TTACCAATGGGGAAAAATCTTCATTTGTAAAT 7966 29 93.1 25 ............CA............... AACATCAGTGGAAATCCACTGCGGC Deletion [8020] 8020 29 89.7 32 ......T.....CA............... CAGGTTATACTGGCAAAACGTCGATGGCTCTC 8081 28 89.7 32 ..........-.CT............... TAAATCAGCAAATATTGTTGTCTACCGTGTCG 8141 29 96.6 32 .............C............... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 8202 29 100.0 32 ............................. TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 8263 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [8274] 8325 29 86.2 32 ............CT.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT C [8336] 8387 29 93.1 32 ............CA............... CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 8448 29 93.1 31 ............C..A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 8508 29 86.2 32 ...C........CA............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 8569 29 93.1 32 ............CT............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 8630 28 79.3 0 ........T.A.CA.........-....A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 92.4 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGAAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA # Questionable array : NO Score: 5.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.24, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.60,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //