Array 1 580691-581438 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNJN01000002.1 Enterobacter oligotrophicus strain CCA3 contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 580691 28 100.0 32 ............................ GAGAGATCAGGATAAACCAACAGATCATCAAA 580751 28 100.0 32 ............................ GCGAGCATCGCGTTCAAGCATACGCTGAAGCT 580811 28 100.0 32 ............................ GAATACATCGAGATCCACAGGGTCACCCTGGT 580871 28 100.0 32 ............................ TCTGGCGCAGAAGGCCAGCAAAAACATGACGC 580931 28 100.0 32 ............................ ACATCCTTCGCAGTGAAGGTCCGGTGCGTTTC 580991 28 100.0 32 ............................ GGCGCGAAGGTACTGCGCTGGAAGGAGGGCTG 581051 28 100.0 32 ............................ GATCAGCGCCGGAAACAGCGTCGGCCTGTTCA 581111 28 100.0 32 ............................ AGTAGCAAAGCACAGCCAGACAAAAACCAACC 581171 28 100.0 32 ............................ GAACGTACATGAGCGGGTAAAACTGGAATTAC 581231 28 100.0 32 ............................ TCCGAACGTCGGATCATGCTGCATGCTTTGAG 581291 28 96.4 32 ...........C................ CCTGTCATATCGTCGTTAATTGTTATCACGCG 581351 28 100.0 32 ............................ ACGTTACCGCAAAATGTATCCTGGATTTGTTC 581411 28 89.3 0 ..C.......T.A............... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 98.9 32 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : GCTCCCGCAAACTCAACCCGTTTGTCGTTGTCTTGGTGCTTATCTGGAGGAAGTCAAAACCGGCCTTGTGGAATCGATGAGTGATTTTCAGATAGTAGAATTTGAGGAAGAAGAGGAGCCACCGCGGCAAAAAGAGTGGTTGCTGGAAGGTACTGAAACCAAGTGCGATTACTGCCGCGCATTAAATCACGTGCTGCTGGTATCGCATTTTGACCGCGAGATGCTGCCGTACCTGACGGGATTATTGCACGACATTACTCACTCAATGGCGGCAGATGTGGTTGCGCCTCGCAGTGCAGAAACCGTTATCCATATTATTCCCTGATTATTTTGTCGCGTCGGGGGAGTTGTTTCGATGCATGCAGGTTAAACCCTTTTTTCTGGCGGTTTTATAACTCATTGATTTATATGATGAGGATTTGCGCTTTGAAAAAAAGGGTTTAATGCGCATGTATTGATTATTTTCTTATACAACAATAAGATGGCGAGGTTTCCTTTCA # Right flank : ACACTCAATGCCCATCTGGACGAAGGCGTTAATGTTCAACGCCACACAGCCCCTCTCGCTAGAAAGGTCTTGCAATTACATGCTCCACATCGATCATTCACAAGAATCCATCACTATTATCTCTGTCATTTTTATTTAAATCAAAAAACATATCCAATTCATAAATATAATCAAAGGAATGCATTATTCATTGGGATGATAAATGCGCTATTAAACACACTTTCTGTTTTATTACCCCTCTGATTATTATTCATTTGATATATATCACATTTGTCTTTGTCTAAAACTCGCTAACATATCCTGCATTCAATTCTTTGAAATAAAAGCCTTAACATGCCCGCAAACAGCATCACGTCTGGTGATTTAAAAACCATACTCCACTCTAAACGCGCCAATATCTATTATCTGGAGAAATGTCGTATTCAGGTAAATGGTGGGCGGGTTGAATATGTCACCCAGAAAGGGAAAGAGTCATTTTTCTGGAACATTCCCATCGCCAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 590991-591138 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNJN01000002.1 Enterobacter oligotrophicus strain CCA3 contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 590991 28 100.0 32 ............................ AGCAGCGGCTCCGAAGCTGCGCGGCACAGTTC 591051 28 100.0 32 ............................ AACGCGTATCGGTTGTACGAATCATATCAATA 591111 28 96.4 0 .........................C.. | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTGCACTGCCGTATAGGCAGCTTAGAAA # Left flank : ACGTGCCACGCGCTCGCTTTCATCGGGCGTCAGCGTTCGCCCTGCGCTTTTGCGGCGAGCGACATTGCGCTCGTTAATCCCCGTCACGCGAAGGATGTCCGCTTTCGACATCGACGTCCATTCATGAATGTTATCGAGGATACTGACGGGTAAACCTTGATTGAGGTATTCAACTAACCGCATACCACGGTTTGCAGGTAAACCGGCATAGCGCCAAAGCGCGTTGTCAGCAGGTTTCTGCGCGGGAACCCATGTTCTCATAGTACCTCCTGATTGAAGTCATTTGTCATAGGTTAGTGTAGTCATTTGTCGGGGTTTTTGGAATGGATGTTTTTTGCGCGGGGCGGTGGAAGAGAATTCAGCTGTTTACCCCTAATTTTGGAGTGATATGTAATGTATTGATTTATATTGGAAATATTGTGGGTGGGGTAAAATAGGATAGGAATAGGGTTTTAGCTTTTTTTGTATGAAAATCATAATGGTAAGGGGGTATTATTTCA # Right flank : AAATAGAAAATAAGGTCTTCACACCCTTACATTTTGCACTGTCGAACAGCCAGCGCTGAGCTGAAAAGAAACCTCAAATAACGGTTTAAGTAATCGACCGCACGACCAAAAAATAAGGCCGGGACTATCCCGGCCTTATTTAATATTCATCTGCCCTTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTTAAAATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTATTAGGCAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGTTTAAAACGCAGCAAAACAGTTTCAGCG # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //