Array 1 14190-12574 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXRO01000064.1 Salmonella enterica subsp. enterica serovar Infantis strain BCW_3974 NODE_64_length_19869_cov_1.80204, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 14189 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 14127 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 14066 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 14005 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 13944 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 13883 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 13822 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 13761 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 13700 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 13639 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 13578 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 13517 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 13456 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 13395 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 13334 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 13273 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 13212 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 13151 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 13089 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 13028 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 12967 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 12906 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 12845 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 12784 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 12723 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 12662 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 12601 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3100-1202 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXRO01000078.1 Salmonella enterica subsp. enterica serovar Infantis strain BCW_3974 NODE_78_length_6851_cov_1.63661, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3099 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 3038 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 2977 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 2916 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 2854 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 2793 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 2732 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 2671 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 2610 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 2549 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 2488 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 2427 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 2366 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 2305 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 2244 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 2183 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 2122 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 2061 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 2000 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 1939 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 1881 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 1820 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 1759 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 1698 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 1637 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 1576 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 1515 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 1454 29 100.0 11 ............................. CGGCCAGCCAT Deletion [1415] 1414 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 1353 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 1292 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1231 29 93.1 0 A...........T................ | A [1204] ========== ====== ====== ====== ============================= ================================= ================== 32 29 97.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //